Wall clock time and date at job start Tue Mar 31 2020 22:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99564 * 2 1 4 4 H 1.48497 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47451 * 299.99468 * 3 2 1 6 6 H 1.48499 * 109.47230 * 60.00316 * 3 2 1 7 7 C 1.38791 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99967 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47076 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99989 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99744 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99685 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47079 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.47355 * 295.00583 * 15 14 13 17 17 N 1.46502 * 109.47157 * 54.99847 * 15 14 13 18 18 C 1.38990 * 120.00586 * 249.54275 * 17 15 14 19 19 C 1.39067 * 119.68624 * 6.72721 * 18 17 15 20 20 C 1.38380 * 119.15404 * 179.78823 * 19 18 17 21 21 C 1.38762 * 118.53695 * 0.47533 * 20 19 18 22 22 C 1.38370 * 119.30270 * 359.74591 * 21 20 19 23 23 F 1.35095 * 119.60452 * 180.02562 * 22 21 20 24 24 N 1.32142 * 120.79097 * 0.02562 * 22 21 20 25 25 C 1.52998 * 109.47218 * 175.00301 * 15 14 13 26 26 C 1.53006 * 117.49972 * 175.60578 * 25 15 14 27 27 C 1.53004 * 117.49878 * 244.22840 * 25 15 14 28 28 H 0.96998 * 120.00008 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47048 * 59.99729 * 10 9 7 30 30 H 1.08995 * 109.47096 * 299.99734 * 10 9 7 31 31 H 0.96994 * 120.00352 * 359.97438 * 13 11 10 32 32 H 1.09007 * 109.46677 * 60.00414 * 14 13 11 33 33 H 1.08995 * 109.47254 * 300.00101 * 14 13 11 34 34 H 0.97008 * 119.99238 * 69.55254 * 17 15 14 35 35 H 1.07994 * 120.42659 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.73005 * 180.21704 * 20 19 18 37 37 H 1.07995 * 120.34389 * 179.76587 * 21 20 19 38 38 H 1.08994 * 115.56352 * 29.92316 * 25 15 14 39 39 H 1.08999 * 117.49686 * 0.02562 * 26 25 15 40 40 H 1.08997 * 117.50290 * 214.97707 * 26 25 15 41 41 H 1.09002 * 117.49592 * 145.01936 * 27 25 15 42 42 H 1.09001 * 117.49607 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8444 -6.3430 -0.0007 14 6 2.3306 -7.7150 -0.0008 15 6 3.5026 -8.6984 -0.0022 16 1 4.0594 -8.5989 -0.9340 17 7 4.3870 -8.4058 1.1285 18 6 5.6518 -7.8756 0.9027 19 6 6.0192 -7.4945 -0.3833 20 6 7.2796 -6.9638 -0.5949 21 6 8.1375 -6.8406 0.4888 22 6 7.7090 -7.2441 1.7411 23 9 8.5390 -7.1264 2.8004 24 7 6.4976 -7.7431 1.9132 25 6 2.9698 -10.1271 0.1234 26 6 3.9840 -11.2695 0.0372 27 6 3.3454 -10.9132 1.3812 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7312 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 3.8011 -6.1834 -0.0012 32 1 1.7216 -7.8749 -0.8906 33 1 1.7224 -7.8753 0.8894 34 1 4.0898 -8.5823 2.0349 35 1 5.3287 -7.6084 -1.2058 36 1 7.5902 -6.6562 -1.5825 37 1 9.1291 -6.4338 0.3562 38 1 1.9807 -10.2992 -0.3010 39 1 5.0308 -11.0032 -0.1086 40 1 3.6621 -12.1931 -0.4438 41 1 2.6033 -11.6023 1.7843 42 1 3.9724 -10.4126 2.1190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096585470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:38 Heat of formation + Delta-G solvation = -3.934355 kcal Electronic energy + Delta-G solvation = -26270.669612 eV Core-core repulsion = 22292.881786 eV Total energy + Delta-G solvation = -3977.787826 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.23583 -40.83176 -39.35247 -38.48379 -35.46978 -34.05348 -32.81883 -32.43421 -30.83723 -29.40553 -28.11499 -25.50866 -24.26295 -23.71818 -23.21493 -22.61978 -20.74644 -20.09183 -18.64814 -18.01977 -17.83473 -16.66560 -16.53046 -16.29397 -16.24691 -16.05570 -15.89828 -15.28224 -14.94121 -14.80778 -14.32016 -14.05878 -13.86467 -13.72231 -13.44370 -13.19195 -12.99881 -12.72323 -12.57950 -12.41540 -12.04045 -11.89633 -11.68482 -11.07372 -11.02571 -10.94633 -10.78501 -10.69110 -10.45928 -10.03584 -10.01218 -9.81069 -9.45330 -9.08622 -8.95356 -8.24677 -8.18398 -6.50822 -6.22426 -3.92944 0.72758 0.97276 2.41101 2.97082 3.06252 3.21342 3.26339 3.30569 3.34895 3.36497 3.58236 3.67300 4.19538 4.20289 4.26944 4.37867 4.43968 4.49503 4.70489 4.74046 4.84386 4.86532 5.00740 5.12948 5.15094 5.25524 5.35124 5.41870 5.48516 5.50775 5.55439 5.68621 5.72239 5.75485 5.85263 5.87157 6.12444 6.14390 6.48418 6.56660 7.03768 7.56605 7.59381 7.63258 8.35001 8.56400 9.23206 10.85056 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002922 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.789431 B = 9578.843434 C =11631.515965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.110 3.890 15 C 0.170 3.830 16 H 0.104 0.896 17 N -0.712 5.712 18 C 0.441 3.559 19 C -0.261 4.261 20 C -0.001 4.001 21 C -0.255 4.255 22 C 0.358 3.642 23 F -0.113 7.113 24 N -0.575 5.575 25 C -0.167 4.167 26 C -0.169 4.169 27 C -0.173 4.173 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.396 0.604 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.410 0.590 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 -22.637 -1.932 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.392 5.392 14 C -0.016 4.016 15 C 0.064 3.936 16 H 0.122 0.878 17 N -0.345 5.345 18 C 0.205 3.795 19 C -0.286 4.286 20 C -0.026 4.026 21 C -0.279 4.279 22 C 0.204 3.796 23 F -0.092 7.092 24 N -0.299 5.299 25 C -0.186 4.186 26 C -0.206 4.206 27 C -0.211 4.211 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.230 0.770 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.140 0.860 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.261 -23.145 -1.234 26.221 hybrid contribution 2.720 1.542 -0.073 3.128 sum 14.981 -21.603 -1.307 26.322 Atomic orbital electron populations 1.70025 1.05942 1.27350 1.46968 1.24990 0.95031 0.99033 0.94527 0.86118 0.79613 0.81873 0.77911 1.19602 1.20543 1.20556 1.22907 0.94944 0.91630 1.58827 0.90896 1.85375 1.04826 0.96319 1.96707 1.23526 1.06609 0.95418 1.04844 1.20302 0.86478 0.86260 0.75086 1.90705 1.15267 1.85589 1.47460 1.45948 1.09981 1.05215 1.78076 1.21700 0.95387 0.81021 1.03463 1.20878 0.90363 0.92360 0.90008 0.87822 1.44767 1.11736 1.68088 1.09953 1.17814 0.85344 0.88352 0.88036 1.21553 0.99821 1.10327 0.96853 1.21227 0.91452 0.91037 0.98930 1.21525 1.03663 1.10962 0.91775 1.17668 0.85238 0.93731 0.82935 1.91632 1.68335 1.92903 1.56313 1.66218 1.03948 1.23776 1.35934 1.22603 1.00712 0.90950 1.04372 1.22921 0.98217 0.98754 1.00729 1.22988 1.03712 1.02946 0.91406 0.92233 0.89402 0.89283 0.76966 0.90055 0.90864 0.75178 0.83997 0.83624 0.83791 0.85986 0.88895 0.88497 0.88474 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 9.82 7.85 -10.98 -0.09 9.73 16 12 O -0.52 -11.48 15.86 5.55 0.09 -11.39 16 13 N -0.74 -9.51 5.39 -60.29 -0.32 -9.83 16 14 C 0.11 1.11 5.33 -4.04 -0.02 1.09 16 15 C 0.17 1.18 2.67 -67.93 -0.18 1.00 16 16 H 0.10 0.62 5.49 -51.93 -0.28 0.34 16 17 N -0.71 -5.76 3.84 -53.95 -0.21 -5.97 16 18 C 0.44 4.21 7.06 -155.02 -1.09 3.11 16 19 C -0.26 -2.04 8.20 -39.22 -0.32 -2.36 16 20 C 0.00 -0.01 10.16 -39.34 -0.40 -0.41 16 21 C -0.26 -2.15 10.08 -39.34 -0.40 -2.55 16 22 C 0.36 3.95 8.41 -17.37 -0.15 3.81 16 23 F -0.11 -1.31 17.29 2.25 0.04 -1.27 16 24 N -0.58 -6.72 10.41 -12.78 -0.13 -6.85 16 25 C -0.17 -0.99 5.73 -90.62 -0.52 -1.51 16 26 C -0.17 -0.97 10.22 -26.73 -0.27 -1.25 16 27 C -0.17 -1.06 9.74 -26.73 -0.26 -1.32 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.40 4.49 6.50 -40.82 -0.27 4.22 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.41 3.46 7.35 -40.82 -0.30 3.16 16 35 H 0.14 0.87 5.90 -52.49 -0.31 0.56 16 36 H 0.15 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.67 6.18 -51.93 -0.32 0.35 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -34.95 372.76 -9.95 -44.90 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.25 Total: 4.15 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.28 Total: -6.56 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.07 Total: -48.10 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.95 -9.95 -44.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.969 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds