Wall clock time and date at job start Tue Mar 31 2020 22:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86805 * 119.99564 * 2 1 4 4 H 1.48497 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47451 * 299.99468 * 3 2 1 6 6 H 1.48499 * 109.47230 * 60.00316 * 3 2 1 7 7 C 1.38791 * 120.00316 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99820 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99967 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47076 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99989 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99744 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99685 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47079 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.47355 * 295.00583 * 15 14 13 17 17 N 1.46502 * 109.47157 * 54.99847 * 15 14 13 18 18 C 1.38990 * 120.00586 * 249.54275 * 17 15 14 19 19 C 1.39067 * 119.68624 * 6.72721 * 18 17 15 20 20 C 1.38380 * 119.15404 * 179.78823 * 19 18 17 21 21 C 1.38762 * 118.53695 * 0.47533 * 20 19 18 22 22 C 1.38370 * 119.30270 * 359.74591 * 21 20 19 23 23 F 1.35095 * 119.60452 * 180.02562 * 22 21 20 24 24 N 1.32142 * 120.79097 * 0.02562 * 22 21 20 25 25 C 1.52998 * 109.47218 * 175.00301 * 15 14 13 26 26 C 1.53006 * 117.49972 * 175.60578 * 25 15 14 27 27 C 1.53004 * 117.49878 * 244.22840 * 25 15 14 28 28 H 0.96998 * 120.00008 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47048 * 59.99729 * 10 9 7 30 30 H 1.08995 * 109.47096 * 299.99734 * 10 9 7 31 31 H 0.96994 * 120.00352 * 359.97438 * 13 11 10 32 32 H 1.09007 * 109.46677 * 60.00414 * 14 13 11 33 33 H 1.08995 * 109.47254 * 300.00101 * 14 13 11 34 34 H 0.97008 * 119.99238 * 69.55254 * 17 15 14 35 35 H 1.07994 * 120.42659 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.73005 * 180.21704 * 20 19 18 37 37 H 1.07995 * 120.34389 * 179.76587 * 21 20 19 38 38 H 1.08994 * 115.56352 * 29.92316 * 25 15 14 39 39 H 1.08999 * 117.49686 * 0.02562 * 26 25 15 40 40 H 1.08997 * 117.50290 * 214.97707 * 26 25 15 41 41 H 1.09002 * 117.49592 * 145.01936 * 27 25 15 42 42 H 1.09001 * 117.49607 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8444 -6.3430 -0.0007 14 6 2.3306 -7.7150 -0.0008 15 6 3.5026 -8.6984 -0.0022 16 1 4.0594 -8.5989 -0.9340 17 7 4.3870 -8.4058 1.1285 18 6 5.6518 -7.8756 0.9027 19 6 6.0192 -7.4945 -0.3833 20 6 7.2796 -6.9638 -0.5949 21 6 8.1375 -6.8406 0.4888 22 6 7.7090 -7.2441 1.7411 23 9 8.5390 -7.1264 2.8004 24 7 6.4976 -7.7431 1.9132 25 6 2.9698 -10.1271 0.1234 26 6 3.9840 -11.2695 0.0372 27 6 3.3454 -10.9132 1.3812 28 1 -0.4850 0.8400 -0.0004 29 1 3.1246 -3.7312 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 3.8011 -6.1834 -0.0012 32 1 1.7216 -7.8749 -0.8906 33 1 1.7224 -7.8753 0.8894 34 1 4.0898 -8.5823 2.0349 35 1 5.3287 -7.6084 -1.2058 36 1 7.5902 -6.6562 -1.5825 37 1 9.1291 -6.4338 0.3562 38 1 1.9807 -10.2992 -0.3010 39 1 5.0308 -11.0032 -0.1086 40 1 3.6621 -12.1931 -0.4438 41 1 2.6033 -11.6023 1.7843 42 1 3.9724 -10.4126 2.1190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096585470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:37 Heat of formation + Delta-G solvation = -26.962747 kcal Electronic energy + Delta-G solvation = -26271.668198 eV Core-core repulsion = 22292.881786 eV Total energy + Delta-G solvation = -3978.786412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.03140 -41.54175 -40.54643 -39.27823 -36.25944 -35.01788 -34.59263 -33.52931 -31.91830 -30.44509 -29.06126 -27.66843 -25.02677 -24.44319 -23.86226 -23.12822 -21.83611 -20.96078 -19.86168 -19.28795 -18.66085 -17.92783 -17.41745 -17.23628 -17.07982 -16.88973 -16.80652 -16.69819 -16.26688 -16.09126 -15.67923 -14.93775 -14.91738 -14.60385 -14.55267 -14.31530 -14.05959 -13.95095 -13.47503 -13.31056 -13.17081 -12.96562 -12.91266 -12.61645 -12.48994 -12.35052 -11.73238 -11.49690 -11.28156 -11.16714 -11.02545 -10.93650 -10.73035 -10.68650 -10.29516 -10.15751 -8.84290 -8.67516 -8.35792 -6.13678 0.04133 0.35149 1.25596 1.40692 1.45753 1.56995 1.58437 1.76957 2.22125 2.26840 2.68585 2.83874 2.92773 2.98480 3.30065 3.55347 3.69647 3.77443 3.86103 3.93043 3.98255 4.15894 4.22093 4.23190 4.25737 4.29545 4.45823 4.46736 4.68149 4.72585 4.80917 4.81663 4.97477 5.03672 5.21200 5.25034 5.27001 5.37279 5.41244 5.51347 5.89425 6.19071 6.35347 6.40188 6.88877 7.05822 7.18674 8.73603 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002922 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.789431 B = 9578.843434 C =11631.515965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.144 6.144 10 C -0.132 4.132 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.711 5.711 14 C 0.108 3.892 15 C 0.182 3.818 16 H 0.122 0.878 17 N -0.712 5.712 18 C 0.427 3.573 19 C -0.258 4.258 20 C 0.003 3.997 21 C -0.250 4.250 22 C 0.326 3.674 23 F -0.127 7.127 24 N -0.607 5.607 25 C -0.164 4.164 26 C -0.161 4.161 27 C -0.181 4.181 28 H 0.271 0.729 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.407 0.593 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.163 0.837 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.842 -23.020 -3.496 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.083 5.917 10 C -0.283 4.283 11 C 0.320 3.680 12 O -0.438 6.438 13 N -0.365 5.365 14 C -0.017 4.017 15 C 0.077 3.923 16 H 0.140 0.860 17 N -0.345 5.345 18 C 0.191 3.809 19 C -0.282 4.282 20 C -0.022 4.022 21 C -0.274 4.274 22 C 0.173 3.827 23 F -0.106 7.106 24 N -0.332 5.332 25 C -0.183 4.183 26 C -0.198 4.198 27 C -0.218 4.218 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.244 0.756 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.244 0.756 35 H 0.181 0.819 36 H 0.198 0.802 37 H 0.181 0.819 38 H 0.150 0.850 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.389 -23.570 -2.798 27.757 hybrid contribution 2.121 1.522 0.416 2.644 sum 16.510 -22.049 -2.382 27.648 Atomic orbital electron populations 1.70179 1.07910 1.28571 1.47998 1.26107 0.95973 1.03253 0.93720 0.84921 0.78599 0.76398 0.78135 1.18124 1.19689 1.20043 1.23227 0.95295 0.92098 1.58861 0.90109 1.85517 1.10175 0.99021 1.97017 1.23372 1.03688 0.94877 1.06342 1.19973 0.86239 0.86532 0.75218 1.90697 1.17089 1.86017 1.50005 1.45690 1.09869 1.05287 1.75607 1.21923 0.96779 0.79679 1.03319 1.20827 0.89113 0.91976 0.90396 0.86002 1.44828 1.11545 1.68037 1.10083 1.18073 0.85459 0.88903 0.88482 1.21852 1.00542 1.09320 0.96495 1.21675 0.90729 0.89808 0.99962 1.21817 1.04725 1.09869 0.90967 1.18051 0.85447 0.95534 0.83662 1.91589 1.68681 1.93217 1.57104 1.66110 1.04745 1.24844 1.37470 1.22572 1.01252 0.90178 1.04298 1.22933 0.97785 0.98942 1.00146 1.23005 1.03984 1.03278 0.91542 0.91953 0.88320 0.87125 0.75647 0.89403 0.91924 0.75612 0.81920 0.80173 0.81892 0.85037 0.89418 0.87354 0.87951 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.32 9.50 67.95 0.65 -30.67 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 9 S -0.14 -8.01 20.57 -56.49 -1.16 -9.17 16 10 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 11 C 0.53 19.30 7.85 87.66 0.69 19.98 16 12 O -0.56 -25.13 15.86 -3.05 -0.05 -25.18 16 13 N -0.71 -17.00 5.39 -463.06 -2.50 -19.49 16 14 C 0.11 1.98 5.33 86.38 0.46 2.44 16 15 C 0.18 2.11 2.67 44.99 0.12 2.23 16 16 H 0.12 1.01 5.49 -2.38 -0.01 1.00 16 17 N -0.71 -10.54 3.84 -324.59 -1.25 -11.78 16 18 C 0.43 7.48 7.06 133.04 0.94 8.42 16 19 C -0.26 -3.24 8.20 22.50 0.18 -3.05 16 20 C 0.00 0.04 10.16 22.43 0.23 0.26 16 21 C -0.25 -3.70 10.08 22.43 0.23 -3.47 16 22 C 0.33 7.05 8.41 84.68 0.71 7.76 16 23 F -0.13 -3.01 17.29 44.97 0.78 -2.23 16 24 N -0.61 -13.97 10.41 -194.35 -2.02 -15.99 16 25 C -0.16 -1.59 5.73 -10.79 -0.06 -1.65 16 26 C -0.16 -1.51 10.22 30.60 0.31 -1.20 16 27 C -0.18 -1.98 9.74 30.60 0.30 -1.69 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.10 3.72 8.14 -2.40 -0.02 3.70 16 30 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 31 H 0.41 8.14 6.50 -92.71 -0.60 7.54 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.41 6.66 7.35 -92.70 -0.68 5.97 16 35 H 0.16 1.29 5.90 -2.91 -0.02 1.28 16 36 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.13 1.08 8.08 -2.39 -0.02 1.07 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 1.17 6.18 -2.39 -0.01 1.16 16 Total: -1.00 -78.58 372.76 1.57 -77.01 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -0.20 Total: 20.82 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.66 Total: -4.15 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -5.48 Total: -102.77 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -78.58 1.57 -77.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.046 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds