Wall clock time and date at job start Tue Mar 31 2020 22:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00496 * 2 1 4 4 H 1.48494 * 109.47505 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46977 * 300.00435 * 3 2 1 6 6 H 1.48499 * 109.47077 * 59.99640 * 3 2 1 7 7 C 1.38801 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99979 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00178 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99919 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99886 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99937 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47002 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46922 * 65.00068 * 15 14 13 17 17 N 1.46500 * 109.47404 * 304.99753 * 15 14 13 18 18 C 1.38994 * 119.99718 * 112.95248 * 17 15 14 19 19 C 1.39066 * 119.69124 * 354.03013 * 18 17 15 20 20 C 1.38376 * 119.15636 * 179.97438 * 19 18 17 21 21 C 1.38753 * 118.53554 * 0.02562 * 20 19 18 22 22 C 1.38364 * 119.30664 * 359.97438 * 21 20 19 23 23 F 1.35107 * 119.60675 * 179.97438 * 22 21 20 24 24 N 1.32138 * 120.79054 * 359.74560 * 22 21 20 25 25 C 1.53004 * 109.47042 * 185.00131 * 15 14 13 26 26 C 1.53004 * 117.49617 * 251.48147 * 25 15 14 27 27 C 1.53000 * 117.49845 * 182.86104 * 25 15 14 28 28 H 0.97001 * 119.99570 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46794 * 60.00167 * 10 9 7 30 30 H 1.09000 * 109.47264 * 300.00235 * 10 9 7 31 31 H 0.97004 * 119.99802 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47144 * 300.00026 * 14 13 11 33 33 H 1.08997 * 109.47264 * 60.00172 * 14 13 11 34 34 H 0.97003 * 120.00006 * 292.95841 * 17 15 14 35 35 H 1.07997 * 120.42308 * 359.95956 * 19 18 17 36 36 H 1.08003 * 120.73192 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.34714 * 179.97438 * 21 20 19 38 38 H 1.08993 * 115.55027 * 37.18768 * 25 15 14 39 39 H 1.09000 * 117.49832 * 0.02562 * 26 25 15 40 40 H 1.09000 * 117.49745 * 145.01810 * 26 25 15 41 41 H 1.08998 * 117.49963 * 214.97929 * 27 25 15 42 42 H 1.09001 * 117.49828 * 359.97353 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3433 0.0007 14 6 2.3300 -7.7151 0.0008 15 6 3.5020 -8.6987 0.0009 16 1 4.0594 -8.5995 0.9324 17 7 4.3854 -8.4059 -1.1305 18 6 5.6694 -7.9246 -0.9032 19 6 6.0664 -7.6055 0.3908 20 6 7.3474 -7.1278 0.6045 21 6 8.1919 -6.9840 -0.4870 22 6 7.7322 -7.3205 -1.7479 23 9 8.5492 -7.1825 -2.8150 24 7 6.5052 -7.7796 -1.9203 25 6 2.9689 -10.1273 -0.1248 26 6 3.0539 -11.0244 1.1118 27 6 3.9872 -11.2682 -0.0759 28 1 -0.4849 0.8401 0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1243 -3.7315 -0.8905 31 1 3.8006 -6.1837 0.0012 32 1 1.7209 -7.8750 0.8905 33 1 1.7218 -7.8754 -0.8894 34 1 4.0742 -8.5478 -2.0382 35 1 5.3835 -7.7286 1.2184 36 1 7.6824 -6.8724 1.5990 37 1 9.1975 -6.6134 -0.3537 38 1 2.1055 -10.2511 -0.7783 39 1 3.4892 -10.5966 2.0149 40 1 2.2461 -11.7385 1.2720 41 1 3.7935 -12.1427 -0.6970 42 1 5.0369 -11.0009 0.0454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096585471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:41 Heat of formation + Delta-G solvation = -8.423071 kcal Electronic energy + Delta-G solvation = -26151.126466 eV Core-core repulsion = 22173.143994 eV Total energy + Delta-G solvation = -3977.982471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.22413 -40.75000 -39.34263 -38.37675 -35.70099 -34.05676 -32.82813 -32.43270 -30.82782 -29.41421 -27.95975 -25.50485 -24.20486 -23.79857 -22.88936 -22.68514 -21.01289 -20.19912 -18.58820 -18.00047 -17.82543 -16.64238 -16.52806 -16.29077 -16.17294 -16.16312 -15.78640 -15.26031 -14.80968 -14.65835 -14.60556 -14.08712 -13.81779 -13.79593 -13.44734 -13.20743 -13.00998 -12.74320 -12.60939 -12.44444 -11.98986 -11.88277 -11.52597 -11.07226 -11.02456 -10.94693 -10.78606 -10.73434 -10.60820 -10.03838 -10.00213 -9.81066 -9.45257 -9.08513 -8.95556 -8.24569 -8.15888 -6.50757 -6.22399 -3.92839 0.73731 0.98443 2.37055 2.97759 3.06183 3.21398 3.27031 3.31371 3.33988 3.41658 3.64871 3.65210 4.11164 4.19872 4.29629 4.36468 4.44187 4.49086 4.63537 4.74701 4.86397 4.88526 4.96775 5.12995 5.15075 5.23338 5.35705 5.42278 5.46988 5.49827 5.54679 5.67493 5.69954 5.74882 5.85800 5.87300 6.12619 6.14991 6.49078 6.57020 7.07384 7.59031 7.59543 7.63202 8.35103 8.56338 9.23249 10.85103 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.002908 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.477952 B = 9626.419040 C =11781.474621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.737 5.737 14 C 0.111 3.889 15 C 0.170 3.830 16 H 0.101 0.899 17 N -0.709 5.709 18 C 0.443 3.557 19 C -0.262 4.262 20 C -0.001 4.001 21 C -0.257 4.257 22 C 0.359 3.641 23 F -0.113 7.113 24 N -0.575 5.575 25 C -0.170 4.170 26 C -0.167 4.167 27 C -0.166 4.166 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.410 0.590 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.761 -22.943 2.604 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.392 5.392 14 C -0.015 4.015 15 C 0.065 3.935 16 H 0.118 0.882 17 N -0.340 5.340 18 C 0.206 3.794 19 C -0.287 4.287 20 C -0.027 4.027 21 C -0.281 4.281 22 C 0.205 3.795 23 F -0.092 7.092 24 N -0.299 5.299 25 C -0.189 4.189 26 C -0.204 4.204 27 C -0.203 4.203 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.230 0.770 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.233 -23.410 1.902 26.482 hybrid contribution 2.721 1.523 0.044 3.119 sum 14.955 -21.887 1.946 26.579 Atomic orbital electron populations 1.70030 1.05942 1.27345 1.46964 1.24994 0.95035 0.99038 0.94527 0.86115 0.79612 0.81860 0.77910 1.19600 1.20555 1.20545 1.22908 0.94945 0.91631 1.58831 0.90895 1.85371 1.04832 0.96320 1.96707 1.23527 1.06609 0.95408 1.04855 1.20300 0.86474 0.86256 0.75083 1.90704 1.15268 1.85586 1.47457 1.45931 1.09966 1.05204 1.78083 1.21679 0.95321 0.80980 1.03485 1.20956 0.90352 0.92193 0.90034 0.88164 1.44579 1.09872 1.69739 1.09789 1.17810 0.85259 0.88353 0.87959 1.21523 0.99223 1.11364 0.96582 1.21208 0.91613 0.90836 0.99001 1.21509 1.03482 1.11626 0.91467 1.17674 0.85308 0.93778 0.82765 1.91635 1.69205 1.92578 1.55781 1.66229 1.04083 1.23512 1.36056 1.22534 1.02341 0.90519 1.03527 1.23022 1.02702 1.02302 0.92412 1.22861 0.96428 0.99276 1.01749 0.92237 0.89289 0.89377 0.76976 0.89966 0.90972 0.75342 0.84145 0.83693 0.83824 0.86728 0.88422 0.88185 0.88555 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 9.83 7.85 -10.98 -0.09 9.75 16 12 O -0.52 -11.49 15.86 5.56 0.09 -11.40 16 13 N -0.74 -9.53 5.39 -60.30 -0.32 -9.85 16 14 C 0.11 1.12 5.36 -4.04 -0.02 1.10 16 15 C 0.17 1.19 2.54 -67.93 -0.17 1.02 16 16 H 0.10 0.61 5.18 -51.93 -0.27 0.34 16 17 N -0.71 -5.79 4.58 -53.94 -0.25 -6.04 16 18 C 0.44 4.25 7.09 -155.02 -1.10 3.15 16 19 C -0.26 -2.05 8.56 -39.22 -0.34 -2.38 16 20 C 0.00 -0.01 10.16 -39.34 -0.40 -0.41 16 21 C -0.26 -2.16 10.08 -39.34 -0.40 -2.56 16 22 C 0.36 3.98 8.40 -17.37 -0.15 3.83 16 23 F -0.11 -1.32 17.29 2.25 0.04 -1.28 16 24 N -0.58 -6.78 10.41 -12.78 -0.13 -6.92 16 25 C -0.17 -1.01 5.33 -90.62 -0.48 -1.49 16 26 C -0.17 -0.86 10.18 -26.73 -0.27 -1.13 16 27 C -0.17 -0.95 10.17 -26.73 -0.27 -1.22 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.40 4.51 6.90 -40.82 -0.28 4.23 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 3.49 8.95 -40.82 -0.37 3.12 16 35 H 0.14 0.86 5.84 -52.49 -0.31 0.55 16 36 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.11 0.68 8.13 -51.93 -0.42 0.26 16 39 H 0.10 0.45 8.07 -51.93 -0.42 0.04 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -35.02 377.36 -10.07 -45.09 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.41 Total: 3.78 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -3.26 Total: -6.27 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.03 Total: -48.26 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.02 -10.07 -45.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.666 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds