Wall clock time and date at job start Tue Mar 31 2020 22:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00496 * 2 1 4 4 H 1.48494 * 109.47505 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46977 * 300.00435 * 3 2 1 6 6 H 1.48499 * 109.47077 * 59.99640 * 3 2 1 7 7 C 1.38801 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99979 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00178 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21277 * 119.99919 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99886 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99937 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47002 * 179.97438 * 14 13 11 16 16 H 1.09004 * 109.46922 * 65.00068 * 15 14 13 17 17 N 1.46500 * 109.47404 * 304.99753 * 15 14 13 18 18 C 1.38994 * 119.99718 * 112.95248 * 17 15 14 19 19 C 1.39066 * 119.69124 * 354.03013 * 18 17 15 20 20 C 1.38376 * 119.15636 * 179.97438 * 19 18 17 21 21 C 1.38753 * 118.53554 * 0.02562 * 20 19 18 22 22 C 1.38364 * 119.30664 * 359.97438 * 21 20 19 23 23 F 1.35107 * 119.60675 * 179.97438 * 22 21 20 24 24 N 1.32138 * 120.79054 * 359.74560 * 22 21 20 25 25 C 1.53004 * 109.47042 * 185.00131 * 15 14 13 26 26 C 1.53004 * 117.49617 * 251.48147 * 25 15 14 27 27 C 1.53000 * 117.49845 * 182.86104 * 25 15 14 28 28 H 0.97001 * 119.99570 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46794 * 60.00167 * 10 9 7 30 30 H 1.09000 * 109.47264 * 300.00235 * 10 9 7 31 31 H 0.97004 * 119.99802 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47144 * 300.00026 * 14 13 11 33 33 H 1.08997 * 109.47264 * 60.00172 * 14 13 11 34 34 H 0.97003 * 120.00006 * 292.95841 * 17 15 14 35 35 H 1.07997 * 120.42308 * 359.95956 * 19 18 17 36 36 H 1.08003 * 120.73192 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.34714 * 179.97438 * 21 20 19 38 38 H 1.08993 * 115.55027 * 37.18768 * 25 15 14 39 39 H 1.09000 * 117.49832 * 0.02562 * 26 25 15 40 40 H 1.09000 * 117.49745 * 145.01810 * 26 25 15 41 41 H 1.08998 * 117.49963 * 214.97929 * 27 25 15 42 42 H 1.09001 * 117.49828 * 359.97353 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3433 0.0007 14 6 2.3300 -7.7151 0.0008 15 6 3.5020 -8.6987 0.0009 16 1 4.0594 -8.5995 0.9324 17 7 4.3854 -8.4059 -1.1305 18 6 5.6694 -7.9246 -0.9032 19 6 6.0664 -7.6055 0.3908 20 6 7.3474 -7.1278 0.6045 21 6 8.1919 -6.9840 -0.4870 22 6 7.7322 -7.3205 -1.7479 23 9 8.5492 -7.1825 -2.8150 24 7 6.5052 -7.7796 -1.9203 25 6 2.9689 -10.1273 -0.1248 26 6 3.0539 -11.0244 1.1118 27 6 3.9872 -11.2682 -0.0759 28 1 -0.4849 0.8401 0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1243 -3.7315 -0.8905 31 1 3.8006 -6.1837 0.0012 32 1 1.7209 -7.8750 0.8905 33 1 1.7218 -7.8754 -0.8894 34 1 4.0742 -8.5478 -2.0382 35 1 5.3835 -7.7286 1.2184 36 1 7.6824 -6.8724 1.5990 37 1 9.1975 -6.6134 -0.3537 38 1 2.1055 -10.2511 -0.7783 39 1 3.4892 -10.5966 2.0149 40 1 2.2461 -11.7385 1.2720 41 1 3.7935 -12.1427 -0.6970 42 1 5.0369 -11.0009 0.0454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096585471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:41 Heat of formation + Delta-G solvation = -31.810996 kcal Electronic energy + Delta-G solvation = -26152.140642 eV Core-core repulsion = 22173.143994 eV Total energy + Delta-G solvation = -3978.996648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02129 -41.46605 -40.55892 -39.13838 -36.42285 -35.08953 -34.59347 -33.53104 -31.89481 -30.49056 -28.89516 -27.66415 -24.97714 -24.50613 -23.54970 -23.11787 -21.92267 -21.24357 -19.87074 -19.24416 -18.62640 -17.93060 -17.40435 -17.17538 -17.06973 -16.93700 -16.89029 -16.51314 -16.41630 -15.91370 -15.52797 -15.09094 -14.94494 -14.58752 -14.56164 -14.29726 -14.06973 -14.04844 -13.47325 -13.31653 -13.17234 -13.01690 -12.91673 -12.60999 -12.38956 -12.18832 -11.73541 -11.47989 -11.23991 -11.20360 -11.16787 -10.93461 -10.73729 -10.69209 -10.29723 -10.16631 -8.81791 -8.67726 -8.35985 -6.13836 0.05169 0.36409 1.25349 1.40575 1.45497 1.56746 1.58080 1.74236 2.22194 2.26743 2.68855 2.84331 2.98301 3.05078 3.29626 3.47627 3.71509 3.77629 3.86238 3.94396 3.98198 4.12493 4.21376 4.23528 4.27984 4.30452 4.44977 4.46607 4.66495 4.73267 4.79615 4.84105 4.97800 5.06387 5.21312 5.26901 5.28475 5.36525 5.41111 5.51582 5.90131 6.18928 6.38089 6.40321 6.91133 7.05623 7.18206 8.73438 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010324 B = 0.002908 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.477952 B = 9626.419040 C =11781.474621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.144 6.144 10 C -0.131 4.131 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.710 5.710 14 C 0.109 3.891 15 C 0.185 3.815 16 H 0.118 0.882 17 N -0.709 5.709 18 C 0.429 3.571 19 C -0.258 4.258 20 C 0.004 3.996 21 C -0.251 4.251 22 C 0.326 3.674 23 F -0.127 7.127 24 N -0.608 5.608 25 C -0.175 4.175 26 C -0.158 4.158 27 C -0.165 4.165 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.407 0.593 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.406 0.594 35 H 0.162 0.838 36 H 0.181 0.819 37 H 0.163 0.837 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.933 -23.328 4.228 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.083 5.917 10 C -0.283 4.283 11 C 0.321 3.679 12 O -0.438 6.438 13 N -0.364 5.364 14 C -0.016 4.016 15 C 0.080 3.920 16 H 0.135 0.865 17 N -0.340 5.340 18 C 0.192 3.808 19 C -0.283 4.283 20 C -0.022 4.022 21 C -0.275 4.275 22 C 0.173 3.827 23 F -0.106 7.106 24 N -0.333 5.333 25 C -0.195 4.195 26 C -0.196 4.196 27 C -0.203 4.203 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.244 0.756 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.242 0.758 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.181 0.819 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.460 -23.838 3.528 28.103 hybrid contribution 2.088 1.498 -0.456 2.610 sum 16.548 -22.340 3.072 27.971 Atomic orbital electron populations 1.70183 1.07911 1.28570 1.47985 1.26112 0.95977 1.03257 0.93714 0.84918 0.78590 0.76384 0.78142 1.18133 1.20029 1.19686 1.23228 0.95293 0.92100 1.58879 0.90116 1.85514 1.10178 0.99023 1.97018 1.23372 1.03688 0.94856 1.06355 1.19973 0.86232 0.86529 0.75208 1.90695 1.17097 1.86016 1.50003 1.45670 1.09859 1.05257 1.75616 1.21892 0.96736 0.79671 1.03275 1.20871 0.89046 0.91759 0.90357 0.86452 1.44646 1.09698 1.69728 1.09911 1.18071 0.85372 0.88912 0.88423 1.21825 0.99969 1.10280 0.96219 1.21661 0.90926 0.89481 1.00087 1.21805 1.04572 1.10475 0.90652 1.18059 0.85500 0.95636 0.83487 1.91592 1.69536 1.92907 1.56591 1.66117 1.04900 1.24627 1.37632 1.22460 1.02543 0.89880 1.04584 1.23129 1.02471 1.01683 0.92294 1.22839 0.96081 0.99033 1.02319 0.91951 0.87157 0.88265 0.75645 0.89599 0.91893 0.75795 0.82029 0.80178 0.81901 0.86878 0.87397 0.87552 0.88366 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.83 13.22 21.65 0.29 -55.55 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.14 -8.02 20.57 -56.49 -1.16 -9.18 16 10 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 11 C 0.53 19.37 7.85 87.66 0.69 20.06 16 12 O -0.56 -25.21 15.86 -3.02 -0.05 -25.26 16 13 N -0.71 -17.10 5.39 -463.07 -2.49 -19.60 16 14 C 0.11 2.04 5.36 86.38 0.46 2.50 16 15 C 0.18 2.18 2.54 44.99 0.11 2.30 16 16 H 0.12 1.01 5.18 -2.39 -0.01 1.00 16 17 N -0.71 -10.61 4.58 -324.56 -1.49 -12.10 16 18 C 0.43 7.56 7.09 133.04 0.94 8.50 16 19 C -0.26 -3.23 8.56 22.50 0.19 -3.04 16 20 C 0.00 0.04 10.16 22.43 0.23 0.27 16 21 C -0.25 -3.70 10.08 22.42 0.23 -3.48 16 22 C 0.33 7.08 8.40 84.68 0.71 7.79 16 23 F -0.13 -3.03 17.29 44.97 0.78 -2.25 16 24 N -0.61 -14.11 10.41 -194.34 -2.02 -16.13 16 25 C -0.17 -1.76 5.33 -10.79 -0.06 -1.82 16 26 C -0.16 -1.23 10.18 30.60 0.31 -0.92 16 27 C -0.17 -1.58 10.17 30.59 0.31 -1.27 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 29 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 30 H 0.10 3.74 8.14 -2.40 -0.02 3.72 16 31 H 0.41 8.20 6.90 -92.70 -0.64 7.56 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.41 6.69 8.95 -92.71 -0.83 5.86 16 35 H 0.16 1.26 5.84 -2.91 -0.02 1.25 16 36 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.11 1.20 8.13 -2.39 -0.02 1.18 16 39 H 0.11 0.64 8.07 -2.39 -0.02 0.62 16 40 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.76 377.36 1.17 -77.60 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -0.39 Total: 20.13 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 5.68 Total: -3.39 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.72 Total: -103.37 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.02 SS G_CDS: -1.16 Total: -9.18 kcal Total: -78.76 1.17 -77.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.786 kcal (2) G-P(sol) polarization free energy of solvation -78.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds