Wall clock time and date at job start Tue Mar 31 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86808 * 119.99753 * 2 1 4 4 H 1.48500 * 109.46853 * 270.00123 * 3 2 1 5 5 H 1.48500 * 109.47315 * 30.00264 * 3 2 1 6 6 H 1.48503 * 109.46546 * 150.00581 * 3 2 1 7 7 C 1.38797 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00254 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99605 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99727 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.46896 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00317 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00137 * 180.02562 * 11 10 9 14 14 C 1.47022 * 125.64487 * 0.02562 * 13 11 10 15 15 C 1.54323 * 107.27316 * 178.89697 * 14 13 11 16 16 C 1.55162 * 102.94184 * 337.80754 * 15 14 13 17 17 H 1.08999 * 111.00538 * 277.38993 * 16 15 14 18 18 C 1.52996 * 111.00690 * 153.57309 * 16 15 14 19 19 N 1.46498 * 109.47059 * 174.99939 * 18 16 15 20 20 C 1.39001 * 119.99905 * 179.72491 * 19 18 16 21 21 C 1.39067 * 119.68850 * 0.27756 * 20 19 18 22 22 C 1.38374 * 119.16020 * 179.97438 * 21 20 19 23 23 C 1.38762 * 118.53054 * 0.02562 * 22 21 20 24 24 C 1.38369 * 119.30799 * 359.97438 * 23 22 21 25 25 F 1.35096 * 119.60589 * 180.02562 * 24 23 22 26 26 N 1.32140 * 120.78945 * 359.74452 * 24 23 22 27 27 C 1.47418 * 125.65299 * 179.97438 * 13 11 10 28 28 H 0.96997 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47176 * 59.99906 * 10 9 7 30 30 H 1.08997 * 109.47163 * 299.99730 * 10 9 7 31 31 H 1.09003 * 109.88679 * 59.48333 * 14 13 11 32 32 H 1.08995 * 110.01405 * 298.38572 * 14 13 11 33 33 H 1.09000 * 110.72412 * 219.44506 * 15 14 13 34 34 H 1.08999 * 110.72315 * 96.16525 * 15 14 13 35 35 H 1.09004 * 109.47066 * 55.00206 * 18 16 15 36 36 H 1.08994 * 109.46974 * 295.00354 * 18 16 15 37 37 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 38 38 H 1.08004 * 120.42417 * 359.95510 * 21 20 19 39 39 H 1.07996 * 120.73592 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.34386 * 180.02562 * 23 22 21 41 41 H 1.08998 * 110.36681 * 85.33231 * 27 13 11 42 42 H 1.09003 * 110.36902 * 323.01272 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6528 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3026 -0.0030 12 8 0.7911 -5.5022 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 4.3111 -6.2450 -0.0032 15 6 4.8665 -7.6846 0.0240 16 6 3.6844 -8.5022 0.6084 17 1 3.6696 -8.4444 1.6967 18 6 3.7397 -9.9577 0.1401 19 7 2.6823 -10.7246 0.8035 20 6 2.5304 -12.0790 0.5304 21 6 3.3895 -12.7008 -0.3693 22 6 3.2288 -14.0497 -0.6327 23 6 2.2101 -14.7346 0.0144 24 6 1.3911 -14.0540 0.8979 25 9 0.3978 -14.7149 1.5316 26 7 1.5725 -12.7664 1.1335 27 6 2.4656 -7.7678 -0.0040 28 1 -0.4850 0.8400 0.0004 29 1 3.1252 -3.7317 0.8875 30 1 3.1237 -3.7309 -0.8925 31 1 4.6461 -5.7018 0.8804 32 1 4.6511 -5.7335 -0.9036 33 1 5.7388 -7.7492 0.6744 34 1 5.1091 -8.0235 -0.9832 35 1 4.7106 -10.3840 0.3927 36 1 3.5950 -9.9978 -0.9394 37 1 2.0854 -10.2863 1.4300 38 1 4.1720 -12.1380 -0.8565 39 1 3.8817 -14.5583 -1.3265 40 1 2.0585 -15.7881 -0.1691 41 1 2.2874 -8.1128 -1.0225 42 1 1.5796 -7.9252 0.6111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:18 Heat of formation + Delta-G solvation = -33.745961 kcal Electronic energy + Delta-G solvation = -25255.670374 eV Core-core repulsion = 21276.589820 eV Total energy + Delta-G solvation = -3979.080554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.30126 -40.62029 -39.91805 -37.79930 -35.97315 -33.13219 -32.45226 -32.32559 -30.14165 -29.66902 -28.56218 -25.99878 -25.43198 -23.92850 -23.48812 -22.50075 -20.91348 -19.45092 -18.48411 -18.04562 -17.71083 -16.77402 -16.60667 -16.41914 -16.36454 -15.85802 -15.43359 -15.26908 -14.83063 -14.77510 -14.31023 -13.98563 -13.86298 -13.76796 -13.52270 -13.40658 -12.99511 -12.77466 -12.64464 -12.54329 -12.32546 -11.86423 -11.69005 -11.43370 -11.13910 -11.07992 -11.04146 -10.79166 -10.74867 -10.10244 -10.03506 -9.83933 -9.46885 -9.08612 -8.58658 -8.26014 -8.22894 -6.52845 -6.23509 -3.94636 0.68324 0.90573 2.41974 2.84619 3.00719 3.20684 3.23783 3.28609 3.31908 3.53537 3.56918 4.04610 4.11080 4.18452 4.22061 4.32445 4.47690 4.69564 4.74902 4.81986 4.84391 4.93486 5.02817 5.11588 5.15192 5.20269 5.31042 5.39545 5.40111 5.46150 5.56361 5.63599 5.69966 5.74952 5.80895 5.88910 6.06944 6.09926 6.33677 6.46978 6.99525 7.53253 7.57041 7.59617 8.33099 8.49955 9.21600 10.83911 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.001728 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.443287 B =16195.722615 C =16946.819709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.514 6.514 13 N -0.628 5.628 14 C 0.101 3.899 15 C -0.120 4.120 16 C -0.117 4.117 17 H 0.095 0.905 18 C 0.139 3.861 19 N -0.719 5.719 20 C 0.441 3.559 21 C -0.251 4.251 22 C -0.006 4.006 23 C -0.259 4.259 24 C 0.358 3.642 25 F -0.113 7.113 26 N -0.578 5.578 27 C 0.113 3.887 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.321 -27.882 -1.324 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.388 6.388 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.158 4.158 16 C -0.136 4.136 17 H 0.114 0.886 18 C 0.015 3.985 19 N -0.351 5.351 20 C 0.204 3.796 21 C -0.276 4.276 22 C -0.032 4.032 23 C -0.283 4.283 24 C 0.203 3.797 25 F -0.092 7.092 26 N -0.302 5.302 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.085 0.915 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.893 -27.474 -0.821 29.949 hybrid contribution 2.029 0.958 -0.140 2.248 sum 13.922 -26.515 -0.962 29.964 Atomic orbital electron populations 1.70018 1.05957 1.27489 1.46757 1.24999 0.95034 0.99039 0.94514 0.86162 0.79397 0.81545 0.78356 1.20254 1.20722 1.19698 1.22852 0.94881 0.91579 1.59067 0.90920 1.85430 1.04910 0.96378 1.96719 1.23505 1.06491 0.94913 1.04796 1.20056 0.85679 0.85491 0.75107 1.90719 1.14942 1.85103 1.47997 1.48490 1.06503 1.05567 1.75989 1.21986 0.80548 0.97193 1.02472 1.22621 0.97255 0.93740 1.02205 1.22623 0.96359 0.92869 1.01755 0.88635 1.21421 0.90330 0.89523 0.97234 1.44645 1.36560 1.05016 1.48863 1.17798 0.87900 0.85338 0.88521 1.21435 1.04693 0.96345 1.05158 1.21191 0.94211 0.93050 0.94733 1.21489 1.00577 1.02449 1.03802 1.17663 0.85552 0.86381 0.90084 1.91632 1.58826 1.78285 1.80488 1.66223 1.24467 1.08292 1.31176 1.22194 0.97202 0.80798 1.00847 0.92151 0.89282 0.89287 0.91104 0.90999 0.89474 0.90002 0.90857 0.90971 0.75377 0.84247 0.83845 0.83915 0.91460 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.97 5.35 36.00 0.19 -2.78 16 11 C 0.55 10.44 7.87 -10.99 -0.09 10.35 16 12 O -0.51 -11.93 16.12 5.56 0.09 -11.84 16 13 N -0.63 -8.49 3.33 -170.53 -0.57 -9.06 16 14 C 0.10 0.94 6.49 -3.06 -0.02 0.92 16 15 C -0.12 -0.66 6.42 -24.89 -0.16 -0.82 16 16 C -0.12 -0.75 3.05 -88.47 -0.27 -1.02 16 17 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 18 C 0.14 0.70 4.35 -4.04 -0.02 0.69 16 19 N -0.72 -5.37 5.67 -60.43 -0.34 -5.71 16 20 C 0.44 3.96 7.65 -155.01 -1.19 2.77 16 21 C -0.25 -1.64 9.32 -39.22 -0.37 -2.00 16 22 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 23 C -0.26 -1.84 10.08 -39.34 -0.40 -2.24 16 24 C 0.36 3.63 8.40 -17.37 -0.15 3.48 16 25 F -0.11 -1.22 17.29 2.25 0.04 -1.18 16 26 N -0.58 -6.52 10.40 -12.78 -0.13 -6.66 16 27 C 0.11 1.20 6.32 -2.53 -0.02 1.19 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.35 8.04 -51.93 -0.42 -0.07 16 35 H 0.07 0.26 7.93 -51.93 -0.41 -0.15 16 36 H 0.07 0.33 7.74 -51.93 -0.40 -0.07 16 37 H 0.41 3.31 8.60 -40.82 -0.35 2.96 16 38 H 0.14 0.58 6.70 -52.48 -0.35 0.23 16 39 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 40 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 41 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 42 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -36.37 373.96 -10.14 -46.51 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.69 Total: -1.88 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.67 Total: -2.81 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.31 Total: -46.83 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.37 -10.14 -46.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.766 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds