Wall clock time and date at job start Tue Mar 31 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.64627 * 359.68523 * 13 11 10 15 15 C 1.54316 * 107.27175 * 180.97172 * 14 13 11 16 16 C 1.55156 * 102.86567 * 22.52711 * 15 14 13 17 17 H 1.08997 * 111.03721 * 82.39200 * 16 15 14 18 18 C 1.52998 * 111.00302 * 206.22885 * 16 15 14 19 19 N 1.46504 * 109.47048 * 178.64689 * 18 16 15 20 20 C 1.38995 * 120.00259 * 179.97438 * 19 18 16 21 21 C 1.39070 * 119.68350 * 0.02562 * 20 19 18 22 22 C 1.38381 * 119.15357 * 179.97438 * 21 20 19 23 23 C 1.38755 * 118.53600 * 359.97438 * 22 21 20 24 24 C 1.38376 * 119.30346 * 0.02562 * 23 22 21 25 25 F 1.35102 * 119.59864 * 179.97438 * 24 23 22 26 26 N 1.32137 * 120.78930 * 359.74126 * 24 23 22 27 27 C 1.47423 * 125.64955 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 30 30 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 31 31 H 1.08994 * 109.88088 * 300.51478 * 14 13 11 32 32 H 1.08997 * 109.88264 * 61.68109 * 14 13 11 33 33 H 1.08999 * 110.92255 * 264.11224 * 15 14 13 34 34 H 1.09002 * 110.58810 * 140.78507 * 15 14 13 35 35 H 1.08998 * 109.47178 * 298.64485 * 18 16 15 36 36 H 1.08996 * 109.47144 * 58.65245 * 18 16 15 37 37 H 0.97003 * 119.99869 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.42666 * 359.95211 * 21 20 19 39 39 H 1.08000 * 120.73348 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.35010 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.36403 * 274.67270 * 27 13 11 42 42 H 1.09000 * 110.36549 * 36.98888 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 4.3112 -6.2450 -0.0067 15 6 4.8666 -7.6846 -0.0292 16 6 3.6851 -8.5016 -0.6156 17 1 3.6708 -8.4428 -1.7039 18 6 3.7400 -9.9576 -0.1487 19 7 2.5940 -10.6890 -0.6946 20 6 2.4293 -12.0386 -0.4057 21 6 3.3561 -12.6880 0.4026 22 6 3.1811 -14.0317 0.6835 23 6 2.0809 -14.6836 0.1452 24 6 1.1975 -13.9765 -0.6513 25 9 0.1245 -14.6055 -1.1789 26 7 1.3884 -12.6926 -0.8983 27 6 2.4657 -7.7679 -0.0033 28 1 -0.4850 -0.8401 -0.0004 29 1 3.1252 -3.7309 -0.8909 30 1 3.1238 -3.7317 0.8891 31 1 4.6439 -5.7035 -0.8922 32 1 4.6511 -5.7326 0.8932 33 1 5.1081 -8.0244 0.9780 34 1 5.7396 -7.7486 -0.6786 35 1 4.6644 -10.4168 -0.4989 36 1 3.7073 -9.9914 0.9403 37 1 1.9505 -10.2316 -1.2582 38 1 4.2018 -12.1506 0.8057 39 1 3.8850 -14.5610 1.3086 40 1 1.9157 -15.7319 0.3458 41 1 2.2867 -8.1135 1.0148 42 1 1.5801 -7.9247 -0.6192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:21 Heat of formation + Delta-G solvation = -38.990761 kcal Electronic energy + Delta-G solvation = -25316.824760 eV Core-core repulsion = 21337.516774 eV Total energy + Delta-G solvation = -3979.307986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.31685 -40.65450 -39.99485 -37.88499 -36.01503 -33.16297 -32.55436 -32.38700 -30.19527 -29.77004 -28.61422 -26.04713 -24.84135 -23.93862 -23.54969 -22.52912 -20.93966 -19.53208 -18.53775 -18.23080 -18.03210 -16.95109 -16.70729 -16.45566 -16.38394 -15.87640 -15.55772 -15.32920 -15.04757 -14.41707 -14.22421 -13.92420 -13.85114 -13.83884 -13.54431 -13.47238 -13.01171 -12.85865 -12.70313 -12.44331 -12.38638 -11.97740 -11.88735 -11.73794 -11.45571 -11.19342 -10.93988 -10.78498 -10.19375 -10.12131 -10.05822 -9.61734 -9.57818 -9.03952 -8.67091 -8.25417 -8.25368 -6.70657 -6.64539 -4.02972 0.66215 0.88532 2.39158 2.72169 2.89591 3.29485 3.30226 3.35866 3.41041 3.51233 3.55978 4.00251 4.05803 4.19569 4.22730 4.26972 4.45271 4.66031 4.72355 4.77237 4.79510 4.87271 4.95106 5.09586 5.15321 5.20029 5.28745 5.33422 5.35658 5.38032 5.46267 5.55806 5.61078 5.72664 5.75782 5.78019 5.96584 6.04412 6.24799 6.44439 6.96857 7.49419 7.50988 7.88751 8.38701 8.47478 9.24575 10.79288 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028059 B = 0.001752 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.668659 B =15978.207948 C =16789.496561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 1.084 2.916 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.116 6.116 10 C -0.124 4.124 11 C 0.547 3.453 12 O -0.514 6.514 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.119 4.119 16 C -0.117 4.117 17 H 0.096 0.904 18 C 0.140 3.860 19 N -0.719 5.719 20 C 0.441 3.559 21 C -0.251 4.251 22 C -0.006 4.006 23 C -0.259 4.259 24 C 0.358 3.642 25 F -0.113 7.113 26 N -0.577 5.577 27 C 0.113 3.887 28 H 0.278 0.722 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.410 0.590 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.068 0.932 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.966 -28.479 1.177 32.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.110 5.890 10 C -0.275 4.275 11 C 0.335 3.665 12 O -0.388 6.388 13 N -0.364 5.364 14 C -0.023 4.023 15 C -0.158 4.158 16 C -0.136 4.136 17 H 0.114 0.886 18 C 0.015 3.985 19 N -0.351 5.351 20 C 0.204 3.796 21 C -0.276 4.276 22 C -0.032 4.032 23 C -0.283 4.283 24 C 0.203 3.797 25 F -0.092 7.092 26 N -0.301 5.301 27 C -0.010 4.010 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.086 0.914 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.446 -26.530 0.738 29.313 hybrid contribution 1.861 -1.710 0.120 2.530 sum 14.307 -28.239 0.858 31.668 Atomic orbital electron populations 1.70802 1.06702 1.30979 1.43205 1.26067 0.96329 1.02147 0.92995 0.83327 0.74766 0.74193 0.76698 1.20242 1.21130 1.21126 1.23685 0.95991 0.92120 1.63780 0.91609 1.84851 1.08087 0.98859 1.97224 1.23289 1.05032 0.94076 1.05107 1.20027 0.85720 0.85502 0.75237 1.90723 1.14925 1.85106 1.48074 1.48459 1.06560 1.05581 1.75822 1.22015 0.80414 0.97340 1.02503 1.22621 0.97280 0.93619 1.02265 1.22630 0.96305 0.92927 1.01760 0.88611 1.21416 0.88323 0.90044 0.98690 1.44634 1.29265 1.05817 1.55429 1.17792 0.87670 0.85411 0.88693 1.21435 1.03296 0.96262 1.06642 1.21193 0.94752 0.93226 0.94015 1.21493 0.98479 1.02501 1.05802 1.17666 0.84022 0.86635 0.91344 1.91635 1.53147 1.79878 1.84551 1.66215 1.24296 1.09323 1.30305 1.22193 0.97245 0.80657 1.00948 0.90981 0.89028 0.89013 0.91021 0.90961 0.89918 0.89398 0.90825 0.90986 0.75375 0.84251 0.83831 0.83892 0.91368 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.52 13.67 55.49 0.76 -26.76 16 2 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 3 Si 1.08 24.80 29.92 -169.99 -5.09 19.72 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.61 -17.49 9.50 30.94 0.29 -17.19 16 8 H 0.07 1.80 7.80 -52.49 -0.41 1.39 16 9 S -0.12 -3.16 19.60 -107.50 -2.11 -5.26 16 10 C -0.12 -2.52 5.35 36.01 0.19 -2.33 16 11 C 0.55 10.36 7.87 -10.98 -0.09 10.28 16 12 O -0.51 -11.87 16.12 5.55 0.09 -11.78 16 13 N -0.63 -8.41 3.33 -170.51 -0.57 -8.98 16 14 C 0.10 0.92 6.48 -3.06 -0.02 0.90 16 15 C -0.12 -0.64 6.42 -24.90 -0.16 -0.80 16 16 C -0.12 -0.73 3.10 -88.46 -0.27 -1.01 16 17 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 18 C 0.14 0.69 4.34 -4.04 -0.02 0.67 16 19 N -0.72 -5.36 5.58 -60.43 -0.34 -5.70 16 20 C 0.44 3.94 7.65 -155.03 -1.19 2.76 16 21 C -0.25 -1.62 9.33 -39.22 -0.37 -1.99 16 22 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 23 C -0.26 -1.83 10.08 -39.34 -0.40 -2.23 16 24 C 0.36 3.63 8.41 -17.37 -0.15 3.48 16 25 F -0.11 -1.22 17.29 2.25 0.04 -1.18 16 26 N -0.58 -6.53 10.40 -12.78 -0.13 -6.66 16 27 C 0.11 1.19 6.08 -2.52 -0.02 1.18 16 28 H 0.28 8.86 7.12 -40.82 -0.29 8.57 16 29 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 30 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.35 8.04 -51.93 -0.42 -0.07 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 36 H 0.07 0.32 7.88 -51.93 -0.41 -0.09 16 37 H 0.41 3.35 8.46 -40.82 -0.35 3.00 16 38 H 0.14 0.56 6.70 -52.48 -0.35 0.21 16 39 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.07 0.71 8.00 -51.93 -0.42 0.30 16 42 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -37.12 372.41 -10.05 -47.17 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.65 Total: -0.40 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.68 Total: -5.79 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.28 Total: -48.10 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.09 Total: 19.72 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.12 -10.05 -47.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.180 kcal (2) G-P(sol) polarization free energy of solvation -37.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds