Wall clock time and date at job start Tue Mar 31 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.47016 * 119.99774 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00131 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.64627 * 359.68523 * 13 11 10 15 15 C 1.54316 * 107.27175 * 180.97172 * 14 13 11 16 16 C 1.55156 * 102.86567 * 22.52711 * 15 14 13 17 17 H 1.08997 * 111.03721 * 82.39200 * 16 15 14 18 18 C 1.52998 * 111.00302 * 206.22885 * 16 15 14 19 19 N 1.46504 * 109.47048 * 178.64689 * 18 16 15 20 20 C 1.38995 * 120.00259 * 179.97438 * 19 18 16 21 21 C 1.39070 * 119.68350 * 0.02562 * 20 19 18 22 22 C 1.38381 * 119.15357 * 179.97438 * 21 20 19 23 23 C 1.38755 * 118.53600 * 359.97438 * 22 21 20 24 24 C 1.38376 * 119.30346 * 0.02562 * 23 22 21 25 25 F 1.35102 * 119.59864 * 179.97438 * 24 23 22 26 26 N 1.32137 * 120.78930 * 359.74126 * 24 23 22 27 27 C 1.47423 * 125.64955 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 30 30 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 31 31 H 1.08994 * 109.88088 * 300.51478 * 14 13 11 32 32 H 1.08997 * 109.88264 * 61.68109 * 14 13 11 33 33 H 1.08999 * 110.92255 * 264.11224 * 15 14 13 34 34 H 1.09002 * 110.58810 * 140.78507 * 15 14 13 35 35 H 1.08998 * 109.47178 * 298.64485 * 18 16 15 36 36 H 1.08996 * 109.47144 * 58.65245 * 18 16 15 37 37 H 0.97003 * 119.99869 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.42666 * 359.95211 * 21 20 19 39 39 H 1.08000 * 120.73348 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.35010 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.36403 * 274.67270 * 27 13 11 42 42 H 1.09000 * 110.36549 * 36.98888 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6964 1.2126 6 1 3.1041 1.6965 -1.2124 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 4.3112 -6.2450 -0.0067 15 6 4.8666 -7.6846 -0.0292 16 6 3.6851 -8.5016 -0.6156 17 1 3.6708 -8.4428 -1.7039 18 6 3.7400 -9.9576 -0.1487 19 7 2.5940 -10.6890 -0.6946 20 6 2.4293 -12.0386 -0.4057 21 6 3.3561 -12.6880 0.4026 22 6 3.1811 -14.0317 0.6835 23 6 2.0809 -14.6836 0.1452 24 6 1.1975 -13.9765 -0.6513 25 9 0.1245 -14.6055 -1.1789 26 7 1.3884 -12.6926 -0.8983 27 6 2.4657 -7.7679 -0.0033 28 1 -0.4850 -0.8401 -0.0004 29 1 3.1252 -3.7309 -0.8909 30 1 3.1238 -3.7317 0.8891 31 1 4.6439 -5.7035 -0.8922 32 1 4.6511 -5.7326 0.8932 33 1 5.1081 -8.0244 0.9780 34 1 5.7396 -7.7486 -0.6786 35 1 4.6644 -10.4168 -0.4989 36 1 3.7073 -9.9914 0.9403 37 1 1.9505 -10.2316 -1.2582 38 1 4.2018 -12.1506 0.8057 39 1 3.8850 -14.5610 1.3086 40 1 1.9157 -15.7319 0.3458 41 1 2.2867 -8.1135 1.0148 42 1 1.5801 -7.9247 -0.6192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098508140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:20 Heat of formation + Delta-G solvation = -64.704357 kcal Electronic energy + Delta-G solvation = -25317.939786 eV Core-core repulsion = 21337.516774 eV Total energy + Delta-G solvation = -3980.423011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02846 -41.34214 -40.97007 -38.95839 -36.71419 -34.77043 -33.81240 -33.23685 -31.09077 -30.81734 -29.39373 -27.22835 -26.62315 -24.56999 -24.28291 -23.14241 -21.52908 -20.91025 -20.15556 -19.05236 -18.70119 -18.16736 -17.69149 -17.11759 -17.03353 -16.88413 -16.45628 -16.41914 -15.91696 -15.78845 -15.64571 -15.23978 -14.64163 -14.58508 -14.52193 -14.36841 -14.06679 -14.05464 -13.82636 -13.60415 -13.48446 -13.16971 -12.93691 -12.74485 -12.31537 -12.10330 -11.96106 -11.70508 -11.58223 -11.27025 -11.12113 -11.11203 -10.72657 -10.62408 -10.35753 -9.79984 -8.94753 -8.91782 -8.77262 -6.30962 0.09272 0.38494 1.11819 1.41680 1.50702 1.60068 1.80134 1.88631 1.96864 2.32648 2.74092 2.92840 3.00497 3.06218 3.35478 3.48702 3.67792 3.75791 3.79474 3.97388 4.06310 4.17905 4.24707 4.27504 4.29072 4.31512 4.41030 4.52253 4.65807 4.75381 4.77889 4.80852 4.93905 4.99373 5.03739 5.23949 5.25297 5.33399 5.54642 5.61624 5.94383 6.11790 6.26951 6.37364 6.94109 6.97525 7.04366 8.48454 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.028059 B = 0.001752 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.668659 B =15978.207948 C =16789.496561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.020 4.020 3 Si 1.138 2.862 4 H -0.281 1.281 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.613 4.613 8 H 0.077 0.923 9 S -0.200 6.200 10 C -0.098 4.098 11 C 0.542 3.458 12 O -0.571 6.571 13 N -0.616 5.616 14 C 0.084 3.916 15 C -0.103 4.103 16 C -0.100 4.100 17 H 0.095 0.905 18 C 0.143 3.857 19 N -0.726 5.726 20 C 0.420 3.580 21 C -0.242 4.242 22 C -0.001 4.001 23 C -0.252 4.252 24 C 0.320 3.680 25 F -0.130 7.130 26 N -0.621 5.621 27 C 0.105 3.895 28 H 0.259 0.741 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.401 0.599 38 H 0.171 0.829 39 H 0.185 0.815 40 H 0.164 0.836 41 H 0.071 0.929 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.943 -29.739 2.208 35.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.223 4.223 3 Si 0.955 3.045 4 H -0.206 1.206 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.760 4.760 8 H 0.095 0.905 9 S 0.026 5.974 10 C -0.249 4.249 11 C 0.330 3.670 12 O -0.450 6.450 13 N -0.351 5.351 14 C -0.038 4.038 15 C -0.141 4.141 16 C -0.119 4.119 17 H 0.113 0.887 18 C 0.019 3.981 19 N -0.357 5.357 20 C 0.183 3.817 21 C -0.267 4.267 22 C -0.026 4.026 23 C -0.276 4.276 24 C 0.167 3.833 25 F -0.109 7.109 26 N -0.347 5.347 27 C -0.018 4.018 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.235 0.765 38 H 0.189 0.811 39 H 0.202 0.798 40 H 0.181 0.819 41 H 0.090 0.910 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.501 -27.861 1.775 32.950 hybrid contribution 0.396 -1.464 -0.183 1.527 sum 17.897 -29.325 1.593 34.392 Atomic orbital electron populations 1.70923 1.08068 1.29945 1.45856 1.27898 0.96304 1.06478 0.91619 0.82714 0.73939 0.69327 0.78542 1.20596 1.18611 1.18663 1.24016 0.96525 0.92546 1.62908 0.90485 1.85129 1.13354 1.01400 1.97476 1.23143 1.01914 0.93192 1.06693 1.19778 0.85525 0.86136 0.75604 1.90698 1.17271 1.85809 1.51231 1.48438 1.08229 1.05540 1.72872 1.22475 0.77358 1.00678 1.03242 1.22663 0.97138 0.90075 1.04269 1.22533 0.94317 0.93567 1.01508 0.88677 1.21574 0.88514 0.88608 0.99362 1.44822 1.29829 1.05614 1.55476 1.18190 0.87987 0.85899 0.89603 1.21831 1.03096 0.96721 1.05069 1.21711 0.94447 0.93053 0.93397 1.21813 0.98026 1.03392 1.04403 1.18099 0.84916 0.86982 0.93329 1.91581 1.54131 1.80108 1.85104 1.66086 1.26169 1.10379 1.32032 1.22435 0.98761 0.79410 1.01169 0.92966 0.87301 0.87209 0.90434 0.90104 0.87700 0.86360 0.87909 0.89730 0.76454 0.81127 0.79796 0.81883 0.91046 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.53 13.67 21.65 0.30 -58.24 16 2 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 3 Si 1.14 49.05 29.92 68.60 2.05 51.10 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.61 -35.45 9.50 67.95 0.65 -34.81 16 8 H 0.08 4.14 7.80 -2.92 -0.02 4.12 16 9 S -0.20 -11.25 19.60 -56.49 -1.11 -12.35 16 10 C -0.10 -3.98 5.35 71.24 0.38 -3.60 16 11 C 0.54 20.84 7.87 87.66 0.69 21.53 16 12 O -0.57 -27.75 16.12 -3.04 -0.05 -27.80 16 13 N -0.62 -15.90 3.33 -811.76 -2.70 -18.60 16 14 C 0.08 1.26 6.48 86.73 0.56 1.83 16 15 C -0.10 -0.60 6.42 31.78 0.20 -0.39 16 16 C -0.10 -0.95 3.10 -9.40 -0.03 -0.98 16 17 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 18 C 0.14 0.88 4.34 86.38 0.37 1.25 16 19 N -0.73 -9.91 5.58 -345.11 -1.93 -11.83 16 20 C 0.42 7.03 7.65 133.04 1.02 8.05 16 21 C -0.24 -2.31 9.33 22.50 0.21 -2.10 16 22 C 0.00 -0.01 10.16 22.43 0.23 0.22 16 23 C -0.25 -3.18 10.08 22.43 0.23 -2.95 16 24 C 0.32 6.66 8.41 84.68 0.71 7.38 16 25 F -0.13 -3.02 17.29 44.97 0.78 -2.24 16 26 N -0.62 -14.52 10.40 -194.34 -2.02 -16.54 16 27 C 0.10 2.13 6.08 86.86 0.53 2.66 16 28 H 0.26 17.37 7.12 -92.71 -0.66 16.71 16 29 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 30 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 0.24 8.04 -2.39 -0.02 0.22 16 34 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.10 0.14 7.92 -2.39 -0.02 0.12 16 36 H 0.08 0.36 7.88 -2.39 -0.02 0.34 16 37 H 0.40 6.71 8.46 -92.71 -0.78 5.93 16 38 H 0.17 0.46 6.70 -2.91 -0.02 0.44 16 39 H 0.18 -0.12 8.06 -2.91 -0.02 -0.14 16 40 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.07 1.43 8.00 -2.39 -0.02 1.41 16 42 H 0.05 1.35 8.04 -2.39 -0.02 1.33 16 Total: -1.00 -88.55 372.41 1.91 -86.64 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.37 Total: 12.46 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 6.22 Total: -2.60 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -6.35 Total: -105.21 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.05 Total: 51.10 kcal Atomic # 16 Polarization: -11.25 SS G_CDS: -1.11 Total: -12.35 kcal Total: -88.55 1.91 -86.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -88.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds