Wall clock time and date at job start Tue Mar 31 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99603 * 2 1 4 4 H 1.48499 * 109.46955 * 269.99997 * 3 2 1 5 5 H 1.48496 * 109.47153 * 30.00015 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00149 * 3 2 1 7 7 C 1.38814 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99877 * 197.36724 * 7 2 1 9 9 N 1.36938 * 120.00028 * 17.36491 * 7 2 1 10 10 C 1.46927 * 120.62890 * 27.66606 * 9 7 2 11 11 C 1.53184 * 108.77352 * 126.41592 * 10 9 7 12 12 C 1.53038 * 109.31814 * 54.63271 * 11 10 9 13 13 H 1.08998 * 109.44786 * 58.64407 * 12 11 10 14 14 N 1.46493 * 109.46480 * 178.61317 * 12 11 10 15 15 C 1.34782 * 120.00129 * 274.79544 * 14 12 11 16 16 O 1.21346 * 119.99654 * 0.27418 * 15 14 12 17 17 C 1.49446 * 120.00091 * 180.27082 * 15 14 12 18 18 O 1.21358 * 119.99869 * 0.02562 * 17 15 14 19 19 N 1.34771 * 119.99965 * 179.97438 * 17 15 14 20 20 C 1.46503 * 119.99942 * 179.97438 * 19 17 15 21 21 C 1.53002 * 109.47295 * 180.02562 * 20 19 17 22 22 F 1.39896 * 109.46943 * 60.00301 * 21 20 19 23 23 F 1.39892 * 109.47304 * 180.02562 * 21 20 19 24 24 F 1.39901 * 109.47078 * 300.00180 * 21 20 19 25 25 C 1.53041 * 109.53583 * 298.63483 * 12 11 10 26 26 H 1.09001 * 109.49579 * 301.37976 * 25 12 11 27 27 O 1.42899 * 109.49499 * 181.31269 * 25 12 11 28 28 C 1.46924 * 120.63113 * 207.68872 * 9 7 2 29 29 H 0.96993 * 120.00209 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58014 * 246.20046 * 10 9 7 31 31 H 1.08999 * 109.58676 * 6.61967 * 10 9 7 32 32 H 1.08994 * 109.49920 * 294.67770 * 11 10 9 33 33 H 1.09010 * 109.49620 * 174.58546 * 11 10 9 34 34 H 0.96998 * 120.00149 * 95.06031 * 14 12 11 35 35 H 0.97001 * 120.00434 * 0.02562 * 19 17 15 36 36 H 1.08999 * 109.47704 * 300.00660 * 20 19 17 37 37 H 1.09005 * 109.46926 * 60.00439 * 20 19 17 38 38 H 0.96702 * 113.99779 * 179.97438 * 27 25 12 39 39 H 1.09000 * 109.58608 * 113.79422 * 28 9 7 40 40 H 1.09004 * 109.70218 * 353.44026 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2787 9 7 1.3725 -2.3609 -0.3550 10 6 0.2279 -2.3338 -1.2758 11 6 0.5008 -3.3033 -2.4301 12 6 0.8187 -4.6887 -1.8632 13 1 -0.0203 -5.0353 -1.2599 14 7 1.0477 -5.6263 -2.9652 15 6 0.0043 -6.2503 -3.5470 16 8 -1.1252 -6.0316 -3.1612 17 6 0.2384 -7.2114 -4.6673 18 8 1.3681 -7.4303 -5.0528 19 7 -0.8049 -7.8357 -5.2487 20 6 -0.5754 -8.7774 -6.3472 21 6 -1.9155 -9.3410 -6.8242 22 9 -2.7296 -8.2942 -7.2698 23 9 -1.6963 -10.2407 -7.8728 24 9 -2.5459 -10.0039 -5.7657 25 6 2.0745 -4.6094 -0.9920 26 1 2.9084 -4.2396 -1.5887 27 8 2.3881 -5.9092 -0.4879 28 6 1.8194 -3.6548 0.1787 29 1 -0.4850 0.8400 0.0004 30 1 -0.6742 -2.6406 -0.7464 31 1 0.0985 -1.3252 -1.6684 32 1 1.3493 -2.9453 -3.0130 33 1 -0.3801 -3.3651 -3.0692 34 1 1.9506 -5.8010 -3.2737 35 1 -1.7079 -7.6610 -4.9403 36 1 -0.0846 -8.2609 -7.1721 37 1 0.0592 -9.5929 -6.0001 38 1 3.1750 -5.9339 0.0737 39 1 1.0471 -4.0692 0.8266 40 1 2.7396 -3.5198 0.7472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100055412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:35 Heat of formation + Delta-G solvation = -246.647733 kcal Electronic energy + Delta-G solvation = -29832.506279 eV Core-core repulsion = 24847.211210 eV Total energy + Delta-G solvation = -4985.295069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.66354 -48.18038 -48.12740 -40.85191 -39.15071 -37.88668 -35.84639 -35.47841 -34.41327 -32.01826 -30.30197 -30.02708 -28.68116 -25.94061 -24.60491 -23.31446 -22.42613 -21.79755 -20.65097 -19.91054 -19.13221 -18.99784 -18.92540 -17.58404 -17.13556 -16.97946 -16.55525 -16.20601 -15.78035 -15.44294 -15.10251 -14.95138 -14.82754 -14.55611 -14.47209 -14.30527 -14.25969 -14.19734 -13.97706 -13.71013 -13.44210 -13.22669 -12.85177 -12.49500 -12.39152 -12.18169 -11.88358 -11.63884 -11.17381 -10.92948 -10.75686 -10.43716 -10.32486 -10.01103 -9.95949 -9.91746 -9.79357 -9.52266 -8.99599 -8.53499 -6.84350 -5.90239 -3.34566 1.24198 1.76584 2.20282 3.07642 3.11692 3.26582 3.32359 3.39010 3.40302 3.45197 3.73470 4.25144 4.35919 4.47316 4.53790 4.68174 5.17868 5.26111 5.38572 5.44145 5.45300 5.67472 5.85955 5.97183 6.10084 6.36074 6.40423 6.46882 6.56725 6.65154 6.69579 7.18628 7.20922 7.50497 7.53918 7.68350 7.84638 7.97497 8.31882 9.07476 9.69663 10.24859 11.18439 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002264 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.613677 B =12363.271385 C =12918.805307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C 0.160 3.840 13 H 0.094 0.906 14 N -0.679 5.679 15 C 0.507 3.493 16 O -0.518 6.518 17 C 0.520 3.480 18 O -0.511 6.511 19 N -0.707 5.707 20 C 0.077 3.923 21 C 0.449 3.551 22 F -0.175 7.175 23 F -0.172 7.172 24 F -0.176 7.176 25 C 0.079 3.921 26 H 0.060 0.940 27 O -0.571 6.571 28 C 0.121 3.879 29 H 0.256 0.744 30 H 0.026 0.974 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.409 0.591 35 H 0.421 0.579 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.376 0.624 39 H 0.030 0.970 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 -18.034 -12.440 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.189 4.189 12 C 0.057 3.943 13 H 0.112 0.888 14 N -0.329 5.329 15 C 0.286 3.714 16 O -0.394 6.394 17 C 0.301 3.699 18 O -0.385 6.385 19 N -0.364 5.364 20 C -0.049 4.049 21 C 0.395 3.605 22 F -0.157 7.157 23 F -0.154 7.154 24 F -0.157 7.157 25 C 0.018 3.982 26 H 0.077 0.923 27 O -0.376 6.376 28 C -0.007 4.007 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.245 0.755 35 H 0.259 0.741 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.223 0.777 39 H 0.048 0.952 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.939 -18.042 -12.754 22.114 hybrid contribution 0.652 0.840 0.140 1.073 sum -0.287 -17.201 -12.614 21.333 Atomic orbital electron populations 1.70025 1.05300 1.25847 1.53070 1.25075 0.95314 0.98583 1.00393 0.86254 0.79087 0.83411 0.77770 1.21310 1.21665 1.20376 1.19173 0.92765 0.84610 1.42447 0.91424 1.44055 1.35844 1.01071 1.50212 1.20847 0.88765 0.98426 0.87465 1.22649 1.01287 0.93874 1.01042 1.21244 0.98234 0.89157 0.85707 0.88822 1.45939 1.09584 1.42578 1.34838 1.19665 0.86038 0.82056 0.83613 1.90799 1.22090 1.63453 1.63061 1.20420 0.84519 0.81447 0.83485 1.90786 1.22093 1.62678 1.62928 1.45378 1.11823 1.43922 1.35291 1.22548 0.92586 0.96344 0.93414 1.20456 0.87597 0.76576 0.75899 1.93255 1.75548 1.57246 1.89602 1.93233 1.94761 1.68748 1.58617 1.93253 1.84397 1.81532 1.56513 1.22790 0.95776 0.83337 0.96270 0.92254 1.86470 1.50745 1.30063 1.70324 1.21526 0.98993 0.87325 0.92806 0.93367 0.95635 0.88651 0.91977 0.91731 0.75509 0.74062 0.86172 0.86178 0.77709 0.95180 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.21 11.19 55.49 0.62 -24.59 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.91 20.88 29.59 -169.99 -5.03 15.85 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.26 -6.77 9.59 -15.06 -0.14 -6.91 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -13.86 2.99 -172.32 -0.52 -14.37 16 10 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 11 C -0.15 -2.75 5.65 -26.62 -0.15 -2.90 16 12 C 0.16 2.71 2.12 -67.89 -0.14 2.57 16 13 H 0.09 1.79 7.57 -51.93 -0.39 1.39 16 14 N -0.68 -9.92 4.91 -54.20 -0.27 -10.19 16 15 C 0.51 7.36 7.86 -11.58 -0.09 7.27 16 16 O -0.52 -8.70 16.14 5.50 0.09 -8.61 16 17 C 0.52 6.26 7.89 -11.59 -0.09 6.17 16 18 O -0.51 -6.80 16.48 5.49 0.09 -6.71 16 19 N -0.71 -6.51 5.41 -60.73 -0.33 -6.83 16 20 C 0.08 0.50 5.64 -4.04 -0.02 0.47 16 21 C 0.45 3.08 3.11 37.16 0.12 3.20 16 22 F -0.18 -1.41 17.18 2.25 0.04 -1.38 16 23 F -0.17 -1.21 17.32 2.25 0.04 -1.17 16 24 F -0.18 -1.40 17.18 2.25 0.04 -1.37 16 25 C 0.08 1.28 3.14 -26.61 -0.08 1.20 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 O -0.57 -8.15 13.16 -35.23 -0.46 -8.62 16 28 C 0.12 2.35 6.14 -3.71 -0.02 2.33 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 2.44 6.04 -51.93 -0.31 2.13 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.41 5.44 8.07 -40.82 -0.33 5.11 16 35 H 0.42 3.77 7.83 -40.82 -0.32 3.45 16 36 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.38 3.79 9.08 45.56 0.41 4.21 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -31.06 353.94 -4.96 -36.02 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -3.86 Total: 9.28 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: -0.74 Total: 17.36 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.49 Total: -55.99 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.28 Total: -23.94 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.12 Total: -3.91 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.06 -4.96 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.630 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds