Wall clock time and date at job start Tue Mar 31 2020 22:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99603 * 2 1 4 4 H 1.48499 * 109.46955 * 269.99997 * 3 2 1 5 5 H 1.48496 * 109.47153 * 30.00015 * 3 2 1 6 6 H 1.48502 * 109.46845 * 150.00149 * 3 2 1 7 7 C 1.38814 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99877 * 197.36724 * 7 2 1 9 9 N 1.36938 * 120.00028 * 17.36491 * 7 2 1 10 10 C 1.46927 * 120.62890 * 27.66606 * 9 7 2 11 11 C 1.53184 * 108.77352 * 126.41592 * 10 9 7 12 12 C 1.53038 * 109.31814 * 54.63271 * 11 10 9 13 13 H 1.08998 * 109.44786 * 58.64407 * 12 11 10 14 14 N 1.46493 * 109.46480 * 178.61317 * 12 11 10 15 15 C 1.34782 * 120.00129 * 274.79544 * 14 12 11 16 16 O 1.21346 * 119.99654 * 0.27418 * 15 14 12 17 17 C 1.49446 * 120.00091 * 180.27082 * 15 14 12 18 18 O 1.21358 * 119.99869 * 0.02562 * 17 15 14 19 19 N 1.34771 * 119.99965 * 179.97438 * 17 15 14 20 20 C 1.46503 * 119.99942 * 179.97438 * 19 17 15 21 21 C 1.53002 * 109.47295 * 180.02562 * 20 19 17 22 22 F 1.39896 * 109.46943 * 60.00301 * 21 20 19 23 23 F 1.39892 * 109.47304 * 180.02562 * 21 20 19 24 24 F 1.39901 * 109.47078 * 300.00180 * 21 20 19 25 25 C 1.53041 * 109.53583 * 298.63483 * 12 11 10 26 26 H 1.09001 * 109.49579 * 301.37976 * 25 12 11 27 27 O 1.42899 * 109.49499 * 181.31269 * 25 12 11 28 28 C 1.46924 * 120.63113 * 207.68872 * 9 7 2 29 29 H 0.96993 * 120.00209 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.58014 * 246.20046 * 10 9 7 31 31 H 1.08999 * 109.58676 * 6.61967 * 10 9 7 32 32 H 1.08994 * 109.49920 * 294.67770 * 11 10 9 33 33 H 1.09010 * 109.49620 * 174.58546 * 11 10 9 34 34 H 0.96998 * 120.00149 * 95.06031 * 14 12 11 35 35 H 0.97001 * 120.00434 * 0.02562 * 19 17 15 36 36 H 1.08999 * 109.47704 * 300.00660 * 20 19 17 37 37 H 1.09005 * 109.46926 * 60.00439 * 20 19 17 38 38 H 0.96702 * 113.99779 * 179.97438 * 27 25 12 39 39 H 1.09000 * 109.58608 * 113.79422 * 28 9 7 40 40 H 1.09004 * 109.70218 * 353.44026 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2787 9 7 1.3725 -2.3609 -0.3550 10 6 0.2279 -2.3338 -1.2758 11 6 0.5008 -3.3033 -2.4301 12 6 0.8187 -4.6887 -1.8632 13 1 -0.0203 -5.0353 -1.2599 14 7 1.0477 -5.6263 -2.9652 15 6 0.0043 -6.2503 -3.5470 16 8 -1.1252 -6.0316 -3.1612 17 6 0.2384 -7.2114 -4.6673 18 8 1.3681 -7.4303 -5.0528 19 7 -0.8049 -7.8357 -5.2487 20 6 -0.5754 -8.7774 -6.3472 21 6 -1.9155 -9.3410 -6.8242 22 9 -2.7296 -8.2942 -7.2698 23 9 -1.6963 -10.2407 -7.8728 24 9 -2.5459 -10.0039 -5.7657 25 6 2.0745 -4.6094 -0.9920 26 1 2.9084 -4.2396 -1.5887 27 8 2.3881 -5.9092 -0.4879 28 6 1.8194 -3.6548 0.1787 29 1 -0.4850 0.8400 0.0004 30 1 -0.6742 -2.6406 -0.7464 31 1 0.0985 -1.3252 -1.6684 32 1 1.3493 -2.9453 -3.0130 33 1 -0.3801 -3.3651 -3.0692 34 1 1.9506 -5.8010 -3.2737 35 1 -1.7079 -7.6610 -4.9403 36 1 -0.0846 -8.2609 -7.1721 37 1 0.0592 -9.5929 -6.0001 38 1 3.1750 -5.9339 0.0737 39 1 1.0471 -4.0692 0.8266 40 1 2.7396 -3.5198 0.7472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100055412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:35 Heat of formation + Delta-G solvation = -272.487946 kcal Electronic energy + Delta-G solvation = -29833.626795 eV Core-core repulsion = 24847.211210 eV Total energy + Delta-G solvation = -4986.415584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.24427 -48.75101 -48.72947 -41.92643 -40.35955 -39.19989 -36.98817 -36.71501 -35.70379 -33.78535 -31.82612 -30.86341 -30.21896 -27.46276 -25.84247 -24.29071 -23.86491 -23.22645 -21.69200 -21.34072 -20.10382 -19.71063 -19.56355 -18.87855 -18.27462 -18.08823 -17.91823 -17.18987 -17.02218 -16.70915 -16.30586 -15.82916 -15.69416 -15.61957 -15.40147 -15.37758 -15.13938 -14.98955 -14.93924 -14.85808 -14.83297 -14.50925 -14.13895 -13.89137 -13.62604 -13.28821 -13.07019 -12.99627 -12.93984 -12.73082 -12.38272 -12.12716 -12.05758 -11.88821 -11.40004 -11.09488 -10.84258 -10.72143 -10.58440 -10.22909 -8.76480 -7.90003 -5.36801 0.20267 0.92376 1.49469 1.51177 1.56435 1.59516 2.01144 2.29919 2.49826 2.56704 2.89934 3.05864 3.13071 3.26010 3.32454 3.61840 3.83457 4.02759 4.05296 4.19027 4.19971 4.38309 4.50796 4.61709 4.68221 4.82128 4.89184 4.99448 5.12629 5.23086 5.38676 5.60704 5.63734 5.67629 6.15512 6.34676 6.51230 6.83354 6.88834 7.10616 7.78840 8.30565 9.17272 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002264 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.613677 B =12363.271385 C =12918.805307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.264 4.264 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.131 4.131 12 C 0.167 3.833 13 H 0.071 0.929 14 N -0.672 5.672 15 C 0.504 3.496 16 O -0.544 6.544 17 C 0.530 3.470 18 O -0.522 6.522 19 N -0.697 5.697 20 C 0.077 3.923 21 C 0.456 3.544 22 F -0.183 7.183 23 F -0.171 7.171 24 F -0.182 7.182 25 C 0.100 3.900 26 H 0.074 0.926 27 O -0.571 6.571 28 C 0.118 3.882 29 H 0.251 0.749 30 H -0.003 1.003 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.419 0.581 35 H 0.423 0.577 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.398 0.602 39 H 0.016 0.984 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -19.464 -13.536 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.190 1.190 7 C -0.394 4.394 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.053 3.947 11 C -0.172 4.172 12 C 0.063 3.937 13 H 0.089 0.911 14 N -0.323 5.323 15 C 0.285 3.715 16 O -0.422 6.422 17 C 0.311 3.689 18 O -0.397 6.397 19 N -0.353 5.353 20 C -0.047 4.047 21 C 0.401 3.599 22 F -0.164 7.164 23 F -0.152 7.152 24 F -0.164 7.164 25 C 0.039 3.961 26 H 0.092 0.908 27 O -0.379 6.379 28 C -0.008 4.008 29 H 0.060 0.940 30 H 0.015 0.985 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.257 0.743 35 H 0.261 0.739 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.248 0.752 39 H 0.034 0.966 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.909 -19.532 -13.863 23.969 hybrid contribution 0.047 1.173 0.508 1.280 sum 0.957 -18.358 -13.355 22.722 Atomic orbital electron populations 1.70186 1.06812 1.26052 1.55025 1.25840 0.95984 1.01701 1.00983 0.85248 0.78142 0.79363 0.77559 1.21168 1.22570 1.18988 1.19556 0.93227 0.85544 1.41067 0.90606 1.44269 1.35707 1.02085 1.50814 1.20573 0.87923 0.97760 0.88479 1.22366 1.01649 0.93947 0.99194 1.20891 0.98038 0.88481 0.86324 0.91126 1.45714 1.10290 1.42102 1.34211 1.20146 0.85427 0.82049 0.83907 1.90793 1.23124 1.64330 1.63968 1.19764 0.84856 0.81307 0.82982 1.90792 1.22446 1.63220 1.63263 1.45332 1.11217 1.43449 1.35297 1.22777 0.92551 0.96423 0.92994 1.20440 0.87463 0.76302 0.75669 1.93245 1.75876 1.57608 1.89686 1.93239 1.94720 1.68693 1.58552 1.93244 1.84606 1.81683 1.56863 1.22336 0.95622 0.83405 0.94738 0.90849 1.86445 1.52260 1.28330 1.70836 1.21681 0.98907 0.86113 0.94127 0.94007 0.98504 0.91757 0.91134 0.91622 0.74330 0.73885 0.84470 0.84417 0.75211 0.96587 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.14 11.19 21.65 0.24 -53.90 16 2 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 3 Si 0.97 43.19 29.59 68.60 2.03 45.22 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.26 -13.69 9.59 84.03 0.81 -12.88 16 8 H 0.08 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.60 -28.66 2.99 -699.09 -2.09 -30.75 16 10 C 0.18 8.45 5.31 86.36 0.46 8.91 16 11 C -0.13 -4.87 5.65 30.67 0.17 -4.70 16 12 C 0.17 5.54 2.12 45.02 0.10 5.63 16 13 H 0.07 2.71 7.57 -2.39 -0.02 2.69 16 14 N -0.67 -18.55 4.91 -443.76 -2.18 -20.73 16 15 C 0.50 14.01 7.86 87.27 0.69 14.70 16 16 O -0.54 -18.07 16.14 -3.24 -0.05 -18.12 16 17 C 0.53 11.71 7.89 87.27 0.69 12.40 16 18 O -0.52 -12.55 16.48 -3.27 -0.05 -12.60 16 19 N -0.70 -11.44 5.41 -464.40 -2.51 -13.95 16 20 C 0.08 0.80 5.64 86.38 0.49 1.29 16 21 C 0.46 5.40 3.11 71.98 0.22 5.62 16 22 F -0.18 -2.68 17.18 44.97 0.77 -1.91 16 23 F -0.17 -2.06 17.32 44.97 0.78 -1.28 16 24 F -0.18 -2.64 17.18 44.97 0.77 -1.87 16 25 C 0.10 3.05 3.14 30.67 0.10 3.15 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 O -0.57 -14.73 13.16 -148.98 -1.96 -16.69 16 28 C 0.12 4.49 6.14 86.36 0.53 5.02 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 30 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.06 3.43 6.04 -2.39 -0.01 3.42 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.42 10.09 8.07 -92.71 -0.75 9.34 16 35 H 0.42 6.95 7.83 -92.71 -0.73 6.22 16 36 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.14 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.40 6.66 9.08 -74.06 -0.67 5.98 16 39 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.08 2.65 7.94 -2.38 -0.02 2.63 16 Total: -1.00 -67.41 353.94 -0.60 -68.02 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -1.01 Total: 21.67 kcal Atomic # 6 Polarization: 32.24 SS G_CDS: 4.66 Total: 36.90 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.54 Total: -119.33 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.07 Total: -47.42 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 2.32 Total: -5.06 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -67.41 -0.60 -68.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.473 kcal (2) G-P(sol) polarization free energy of solvation -67.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds