Wall clock time and date at job start Tue Mar 31 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47443 * 120.00202 * 3 2 1 6 6 H 1.48507 * 109.46844 * 240.00176 * 3 2 1 7 7 C 1.38811 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00567 * 162.76498 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 14 14 N 1.46504 * 109.45065 * 181.25215 * 12 11 10 15 15 C 1.34770 * 119.99766 * 84.94197 * 14 12 11 16 16 O 1.21347 * 120.00062 * 0.02562 * 15 14 12 17 17 C 1.49455 * 120.00059 * 180.02562 * 15 14 12 18 18 O 1.21347 * 119.99879 * 359.97438 * 17 15 14 19 19 N 1.34780 * 120.00093 * 180.02562 * 17 15 14 20 20 C 1.46494 * 120.00085 * 179.97438 * 19 17 15 21 21 C 1.52995 * 109.47242 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47518 * 60.00058 * 21 20 19 23 23 F 1.39905 * 109.47122 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.46958 * 299.99414 * 21 20 19 25 25 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 26 26 H 1.08998 * 109.52193 * 178.66778 * 25 12 11 27 27 O 1.42894 * 109.49909 * 58.58688 * 25 12 11 28 28 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 29 29 H 0.97000 * 119.99965 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 31 31 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 32 32 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 33 33 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 34 34 H 0.97004 * 120.00075 * 264.94533 * 14 12 11 35 35 H 0.97000 * 119.99591 * 0.02562 * 19 17 15 36 36 H 1.09003 * 109.46836 * 300.00151 * 20 19 17 37 37 H 1.09005 * 109.47483 * 59.99485 * 20 19 17 38 38 H 0.96705 * 113.99942 * 180.16232 * 27 25 12 39 39 H 1.09004 * 109.58525 * 246.16048 * 28 9 7 40 40 H 1.08995 * 109.58430 * 6.43945 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3717 -2.3613 0.3524 10 6 0.2275 -2.3357 1.2737 11 6 0.4938 -3.3040 2.4248 12 6 0.8147 -4.6893 1.8591 13 1 -0.0220 -5.0370 1.2533 14 7 1.0410 -5.6263 2.9624 15 6 -0.0041 -6.2468 3.5446 16 8 -1.1326 -6.0298 3.1546 17 6 0.2266 -7.2022 4.6704 18 8 1.3551 -7.4196 5.0601 19 7 -0.8186 -7.8232 5.2523 20 6 -0.5924 -8.7601 6.3555 21 6 -1.9338 -9.3215 6.8310 22 9 -2.5613 -9.9890 5.7737 23 9 -1.7178 -10.2158 7.8850 24 9 -2.7491 -8.2727 7.2698 25 6 2.0734 -4.6090 0.9922 26 1 2.3154 -5.6002 0.6087 27 8 3.1634 -4.1225 1.7777 28 6 1.8216 -3.6549 -0.1795 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3278 1.6683 31 1 -0.6750 -2.6411 0.7442 32 1 -0.3892 -3.3664 3.0609 33 1 1.3401 -2.9451 3.0105 34 1 1.9431 -5.8000 3.2739 35 1 -1.7205 -7.6502 4.9400 36 1 0.0425 -9.5775 6.0135 37 1 -0.1031 -8.2402 7.1792 38 1 3.9950 -4.0436 1.2905 39 1 1.0518 -4.0702 -0.8300 40 1 2.7427 -3.5168 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100055413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:38 Heat of formation + Delta-G solvation = -243.745114 kcal Electronic energy + Delta-G solvation = -29940.768705 eV Core-core repulsion = 24955.599503 eV Total energy + Delta-G solvation = -4985.169202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.67319 -48.18936 -48.13854 -40.87223 -39.16898 -37.93142 -35.86121 -34.98544 -34.39685 -31.89685 -30.29190 -30.01491 -28.88781 -25.92304 -24.57421 -23.30220 -22.37882 -21.80028 -20.62889 -19.84244 -19.14315 -18.99123 -18.91915 -17.57663 -17.13586 -17.01430 -16.22726 -16.06362 -15.70364 -15.42921 -15.11497 -14.92880 -14.66574 -14.56849 -14.52084 -14.33451 -14.27789 -14.24938 -14.10722 -13.77854 -13.41498 -13.25441 -12.86004 -12.50873 -12.18052 -12.13503 -11.88915 -11.31061 -11.07596 -10.86781 -10.75837 -10.39204 -10.30741 -10.08113 -9.97441 -9.90620 -9.67956 -9.40384 -8.90609 -8.46038 -6.72518 -5.82279 -3.24673 1.21701 1.75080 2.18974 3.04373 3.10601 3.26152 3.37055 3.43416 3.44023 3.44556 3.72424 4.30204 4.44550 4.52590 4.63410 4.67296 5.13228 5.28651 5.36176 5.43733 5.50646 5.66862 5.81850 6.07848 6.20528 6.39712 6.44601 6.53311 6.53630 6.72473 6.75845 7.18845 7.33393 7.51246 7.62369 7.75150 7.94697 8.05187 8.40290 9.15774 9.78503 10.34023 11.26373 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.002249 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.967649 B =12449.330956 C =12866.840966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.581 5.581 10 C 0.174 3.826 11 C -0.145 4.145 12 C 0.158 3.842 13 H 0.097 0.903 14 N -0.681 5.681 15 C 0.504 3.496 16 O -0.518 6.518 17 C 0.519 3.481 18 O -0.510 6.510 19 N -0.707 5.707 20 C 0.076 3.924 21 C 0.449 3.551 22 F -0.176 7.176 23 F -0.172 7.172 24 F -0.175 7.175 25 C 0.081 3.919 26 H 0.048 0.952 27 O -0.554 6.554 28 C 0.119 3.881 29 H 0.255 0.745 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.414 0.586 35 H 0.421 0.579 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.375 0.625 39 H 0.028 0.972 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -19.521 11.492 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.048 3.952 11 C -0.185 4.185 12 C 0.056 3.944 13 H 0.115 0.885 14 N -0.333 5.333 15 C 0.283 3.717 16 O -0.395 6.395 17 C 0.300 3.700 18 O -0.384 6.384 19 N -0.364 5.364 20 C -0.049 4.049 21 C 0.395 3.605 22 F -0.157 7.157 23 F -0.154 7.154 24 F -0.156 7.156 25 C 0.020 3.980 26 H 0.066 0.934 27 O -0.359 6.359 28 C -0.009 4.009 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.250 0.750 35 H 0.259 0.741 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.221 0.779 39 H 0.046 0.954 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.290 -19.343 11.928 22.762 hybrid contribution 0.553 0.654 -0.251 0.893 sum -0.737 -18.688 11.678 22.049 Atomic orbital electron populations 1.70016 1.05271 1.25762 1.53525 1.25032 0.95287 0.98466 1.00788 0.86355 0.78904 0.83287 0.78098 1.21649 1.20995 1.20925 1.19072 0.92528 0.84756 1.41760 0.91776 1.43896 1.35627 1.00914 1.49918 1.20699 0.88499 0.98465 0.87584 1.22465 1.00957 0.94137 1.00956 1.21267 0.97064 0.89668 0.86449 0.88537 1.46067 1.09843 1.42416 1.34973 1.19724 0.86058 0.82178 0.83696 1.90801 1.22164 1.63506 1.62994 1.20430 0.84517 0.81378 0.83659 1.90792 1.22213 1.62377 1.62977 1.45381 1.11827 1.44266 1.34954 1.22547 0.92575 0.96438 0.93342 1.20456 0.87621 0.76556 0.75891 1.93250 1.84529 1.81332 1.56601 1.93237 1.94816 1.69089 1.58211 1.93258 1.75481 1.57101 1.89799 1.22629 0.86610 0.96014 0.92771 0.93391 1.86448 1.20403 1.89046 1.40039 1.21541 0.98875 0.87975 0.92521 0.93477 0.88972 0.96129 0.92814 0.91232 0.74965 0.74068 0.86194 0.86143 0.77860 0.95387 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.19 55.49 0.62 -25.16 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.65 9.58 -15.06 -0.14 -6.79 16 8 H 0.06 1.65 7.89 -52.48 -0.41 1.23 16 9 N -0.58 -13.86 2.94 -172.58 -0.51 -14.36 16 10 C 0.17 4.09 5.28 -3.94 -0.02 4.07 16 11 C -0.15 -2.84 5.49 -26.83 -0.15 -2.99 16 12 C 0.16 2.65 2.20 -67.88 -0.15 2.50 16 13 H 0.10 1.69 7.58 -51.93 -0.39 1.29 16 14 N -0.68 -9.83 5.04 -54.19 -0.27 -10.10 16 15 C 0.50 7.12 7.85 -11.59 -0.09 7.03 16 16 O -0.52 -8.45 16.14 5.50 0.09 -8.36 16 17 C 0.52 6.12 7.89 -11.58 -0.09 6.03 16 18 O -0.51 -6.73 16.48 5.50 0.09 -6.64 16 19 N -0.71 -6.33 5.41 -60.73 -0.33 -6.66 16 20 C 0.08 0.48 5.64 -4.05 -0.02 0.46 16 21 C 0.45 3.02 3.11 37.16 0.12 3.13 16 22 F -0.18 -1.36 17.18 2.25 0.04 -1.32 16 23 F -0.17 -1.19 17.32 2.25 0.04 -1.15 16 24 F -0.17 -1.40 17.18 2.25 0.04 -1.36 16 25 C 0.08 1.28 3.38 -26.61 -0.09 1.19 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 O -0.55 -8.71 12.09 -35.23 -0.43 -9.13 16 28 C 0.12 2.26 6.16 -3.71 -0.02 2.23 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.07 1.45 7.61 -51.93 -0.40 1.05 16 34 H 0.41 5.64 7.73 -40.82 -0.32 5.32 16 35 H 0.42 3.65 7.83 -40.82 -0.32 3.33 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.37 4.60 9.08 45.56 0.41 5.02 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -31.52 352.22 -4.91 -36.43 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.82 Total: 9.31 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -0.75 Total: 16.86 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.49 Total: -56.28 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.25 Total: -24.13 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.12 Total: -3.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.52 -4.91 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.314 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -243.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds