Wall clock time and date at job start Tue Mar 31 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47443 * 120.00202 * 3 2 1 6 6 H 1.48507 * 109.46844 * 240.00176 * 3 2 1 7 7 C 1.38811 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00567 * 162.76498 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 14 14 N 1.46504 * 109.45065 * 181.25215 * 12 11 10 15 15 C 1.34770 * 119.99766 * 84.94197 * 14 12 11 16 16 O 1.21347 * 120.00062 * 0.02562 * 15 14 12 17 17 C 1.49455 * 120.00059 * 180.02562 * 15 14 12 18 18 O 1.21347 * 119.99879 * 359.97438 * 17 15 14 19 19 N 1.34780 * 120.00093 * 180.02562 * 17 15 14 20 20 C 1.46494 * 120.00085 * 179.97438 * 19 17 15 21 21 C 1.52995 * 109.47242 * 180.02562 * 20 19 17 22 22 F 1.39898 * 109.47518 * 60.00058 * 21 20 19 23 23 F 1.39905 * 109.47122 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.46958 * 299.99414 * 21 20 19 25 25 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 26 26 H 1.08998 * 109.52193 * 178.66778 * 25 12 11 27 27 O 1.42894 * 109.49909 * 58.58688 * 25 12 11 28 28 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 29 29 H 0.97000 * 119.99965 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 31 31 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 32 32 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 33 33 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 34 34 H 0.97004 * 120.00075 * 264.94533 * 14 12 11 35 35 H 0.97000 * 119.99591 * 0.02562 * 19 17 15 36 36 H 1.09003 * 109.46836 * 300.00151 * 20 19 17 37 37 H 1.09005 * 109.47483 * 59.99485 * 20 19 17 38 38 H 0.96705 * 113.99942 * 180.16232 * 27 25 12 39 39 H 1.09004 * 109.58525 * 246.16048 * 28 9 7 40 40 H 1.08995 * 109.58430 * 6.43945 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3717 -2.3613 0.3524 10 6 0.2275 -2.3357 1.2737 11 6 0.4938 -3.3040 2.4248 12 6 0.8147 -4.6893 1.8591 13 1 -0.0220 -5.0370 1.2533 14 7 1.0410 -5.6263 2.9624 15 6 -0.0041 -6.2468 3.5446 16 8 -1.1326 -6.0298 3.1546 17 6 0.2266 -7.2022 4.6704 18 8 1.3551 -7.4196 5.0601 19 7 -0.8186 -7.8232 5.2523 20 6 -0.5924 -8.7601 6.3555 21 6 -1.9338 -9.3215 6.8310 22 9 -2.5613 -9.9890 5.7737 23 9 -1.7178 -10.2158 7.8850 24 9 -2.7491 -8.2727 7.2698 25 6 2.0734 -4.6090 0.9922 26 1 2.3154 -5.6002 0.6087 27 8 3.1634 -4.1225 1.7777 28 6 1.8216 -3.6549 -0.1795 29 1 -0.4850 0.8400 0.0004 30 1 0.0986 -1.3278 1.6683 31 1 -0.6750 -2.6411 0.7442 32 1 -0.3892 -3.3664 3.0609 33 1 1.3401 -2.9451 3.0105 34 1 1.9431 -5.8000 3.2739 35 1 -1.7205 -7.6502 4.9400 36 1 0.0425 -9.5775 6.0135 37 1 -0.1031 -8.2402 7.1792 38 1 3.9950 -4.0436 1.2905 39 1 1.0518 -4.0702 -0.8300 40 1 2.7427 -3.5168 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100055413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:38 Heat of formation + Delta-G solvation = -269.980007 kcal Electronic energy + Delta-G solvation = -29941.906336 eV Core-core repulsion = 24955.599503 eV Total energy + Delta-G solvation = -4986.306832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.24215 -48.74869 -48.72834 -41.92467 -40.36832 -39.22850 -36.76320 -36.53340 -35.63539 -33.68022 -31.80073 -30.88022 -30.40488 -27.42884 -25.81437 -24.25778 -23.87768 -23.22456 -21.63899 -21.22073 -20.05938 -19.70937 -19.56138 -18.97374 -18.26190 -18.02434 -17.47926 -17.17991 -17.00183 -16.52255 -16.30082 -15.86671 -15.75026 -15.56768 -15.44896 -15.32257 -15.21983 -15.13826 -14.91127 -14.86012 -14.82527 -14.56997 -14.10005 -13.77844 -13.66742 -13.07219 -13.00475 -12.97755 -12.76367 -12.64867 -12.43946 -12.10811 -12.06775 -11.90532 -11.44302 -10.93357 -10.81577 -10.71843 -10.49768 -10.18833 -8.66159 -7.85505 -5.29577 0.20045 0.92775 1.48187 1.51602 1.56575 1.57435 2.00579 2.31462 2.52640 2.56850 2.90024 3.09627 3.26977 3.32042 3.38780 3.66942 3.81683 4.02474 4.05306 4.19189 4.26039 4.35356 4.66126 4.69819 4.71376 4.87476 4.91214 5.00836 5.11291 5.27326 5.47988 5.63041 5.66004 5.71436 6.17633 6.39359 6.52269 6.84005 7.00041 7.16027 7.85876 8.37196 9.21285 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.002249 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.967649 B =12449.330956 C =12866.840966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.055 4.055 3 Si 0.965 3.035 4 H -0.299 1.299 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.253 4.253 8 H 0.073 0.927 9 N -0.599 5.599 10 C 0.182 3.818 11 C -0.128 4.128 12 C 0.164 3.836 13 H 0.090 0.910 14 N -0.675 5.675 15 C 0.503 3.497 16 O -0.543 6.543 17 C 0.529 3.471 18 O -0.522 6.522 19 N -0.697 5.697 20 C 0.077 3.923 21 C 0.456 3.544 22 F -0.182 7.182 23 F -0.171 7.171 24 F -0.183 7.183 25 C 0.097 3.903 26 H 0.089 0.911 27 O -0.565 6.565 28 C 0.112 3.888 29 H 0.248 0.752 30 H 0.054 0.946 31 H -0.002 1.002 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.421 0.579 35 H 0.423 0.577 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.391 0.609 39 H 0.028 0.972 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -21.377 12.178 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.250 4.250 3 Si 0.794 3.206 4 H -0.225 1.225 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.108 0.892 14 N -0.327 5.327 15 C 0.284 3.716 16 O -0.420 6.420 17 C 0.310 3.690 18 O -0.398 6.398 19 N -0.353 5.353 20 C -0.048 4.048 21 C 0.401 3.599 22 F -0.163 7.163 23 F -0.152 7.152 24 F -0.165 7.165 25 C 0.036 3.964 26 H 0.106 0.894 27 O -0.373 6.373 28 C -0.015 4.015 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.259 0.741 35 H 0.261 0.739 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.241 0.759 39 H 0.046 0.954 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.342 -21.254 12.628 24.725 hybrid contribution 0.025 1.146 -0.449 1.231 sum 0.367 -20.109 12.179 23.512 Atomic orbital electron populations 1.70176 1.06721 1.25814 1.55669 1.25780 0.95971 1.01557 1.01659 0.85368 0.77516 0.79420 0.78292 1.22528 1.20720 1.19840 1.19462 0.92980 0.85815 1.40036 0.90977 1.44099 1.35410 1.02172 1.50489 1.20395 0.88059 0.97380 0.88587 1.22165 1.00316 0.95270 0.99084 1.20992 0.97702 0.88238 0.87058 0.89203 1.45834 1.10405 1.41920 1.34505 1.20155 0.85430 0.82119 0.83915 1.90797 1.23094 1.64330 1.63797 1.19806 0.84821 0.81244 0.83172 1.90798 1.22646 1.62976 1.63360 1.45333 1.11238 1.43765 1.34945 1.22770 0.92541 0.96567 0.92885 1.20440 0.87485 0.76269 0.75672 1.93243 1.84718 1.81459 1.56892 1.93242 1.94778 1.69044 1.58172 1.93247 1.75832 1.57503 1.89895 1.22405 0.86251 0.96780 0.90981 0.89360 1.86418 1.21169 1.89161 1.40534 1.21802 0.99192 0.86405 0.94071 0.94254 0.92722 0.98425 0.93055 0.92299 0.74110 0.73851 0.84312 0.84646 0.75910 0.95398 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.46 11.19 21.65 0.24 -55.22 16 2 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 3 Si 0.97 44.49 29.59 68.60 2.03 46.52 16 4 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.25 -13.34 9.58 84.03 0.81 -12.54 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.60 -28.62 2.94 -699.93 -2.06 -30.68 16 10 C 0.18 8.87 5.28 86.22 0.46 9.32 16 11 C -0.13 -5.06 5.49 30.53 0.17 -4.89 16 12 C 0.16 5.28 2.20 45.02 0.10 5.37 16 13 H 0.09 3.06 7.58 -2.39 -0.02 3.04 16 14 N -0.67 -18.20 5.04 -443.72 -2.24 -20.44 16 15 C 0.50 13.46 7.85 87.27 0.69 14.14 16 16 O -0.54 -17.23 16.14 -3.24 -0.05 -17.28 16 17 C 0.53 11.37 7.89 87.27 0.69 12.05 16 18 O -0.52 -12.47 16.48 -3.24 -0.05 -12.52 16 19 N -0.70 -11.03 5.41 -464.41 -2.51 -13.54 16 20 C 0.08 0.78 5.64 86.38 0.49 1.26 16 21 C 0.46 5.25 3.11 71.98 0.22 5.48 16 22 F -0.18 -2.51 17.18 44.97 0.77 -1.74 16 23 F -0.17 -2.03 17.32 44.97 0.78 -1.25 16 24 F -0.18 -2.67 17.18 44.97 0.77 -1.90 16 25 C 0.10 2.80 3.38 30.67 0.10 2.90 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 27 O -0.57 -16.20 12.09 -148.98 -1.80 -18.00 16 28 C 0.11 4.07 6.16 86.36 0.53 4.60 16 29 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.05 3.05 6.04 -2.38 -0.01 3.04 16 31 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 32 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.06 2.44 7.61 -2.39 -0.02 2.43 16 34 H 0.42 10.40 7.73 -92.70 -0.72 9.69 16 35 H 0.42 6.65 7.83 -92.71 -0.73 5.92 16 36 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.14 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.39 8.34 9.08 -74.05 -0.67 7.67 16 39 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.08 2.57 7.93 -2.39 -0.02 2.56 16 Total: -1.00 -68.75 352.22 -0.43 -69.18 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -0.97 Total: 21.75 kcal Atomic # 6 Polarization: 30.45 SS G_CDS: 4.66 Total: 35.11 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.57 Total: -119.88 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.91 Total: -47.80 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 2.32 Total: -4.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.75 -0.43 -69.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.802 kcal (2) G-P(sol) polarization free energy of solvation -68.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds