Wall clock time and date at job start Tue Mar 31 2020 22:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99726 * 2 1 4 4 H 1.48499 * 109.46714 * 269.99110 * 3 2 1 5 5 H 1.48496 * 109.47428 * 29.99493 * 3 2 1 6 6 H 1.48502 * 109.47041 * 149.99585 * 3 2 1 7 7 C 1.38810 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99856 * 163.08771 * 7 2 1 9 9 N 1.36935 * 120.00387 * 343.08715 * 7 2 1 10 10 C 1.46927 * 120.62842 * 151.82757 * 9 7 2 11 11 C 1.53198 * 108.77284 * 126.37510 * 10 9 7 12 12 C 1.53038 * 109.31127 * 54.63139 * 11 10 9 13 13 H 1.09001 * 109.46234 * 58.65081 * 12 11 10 14 14 N 1.46508 * 109.45903 * 178.61575 * 12 11 10 15 15 C 1.34775 * 119.99683 * 275.03002 * 14 12 11 16 16 O 1.21349 * 120.00670 * 359.97438 * 15 14 12 17 17 C 1.49450 * 119.99861 * 179.97438 * 15 14 12 18 18 O 1.21355 * 119.99811 * 359.97438 * 17 15 14 19 19 N 1.34778 * 120.00229 * 180.02562 * 17 15 14 20 20 C 1.46499 * 120.00106 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47040 * 179.97438 * 20 19 17 22 22 F 1.39895 * 109.47417 * 59.99960 * 21 20 19 23 23 F 1.39907 * 109.47001 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47289 * 299.99534 * 21 20 19 25 25 C 1.53039 * 109.53140 * 298.62796 * 12 11 10 26 26 H 1.09000 * 109.49982 * 181.32358 * 25 12 11 27 27 O 1.42896 * 109.49800 * 301.42427 * 25 12 11 28 28 C 1.46922 * 120.63259 * 331.81071 * 9 7 2 29 29 H 0.96996 * 120.00114 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.59089 * 6.59142 * 10 9 7 31 31 H 1.08997 * 109.59170 * 246.15699 * 10 9 7 32 32 H 1.09002 * 109.49478 * 294.68174 * 11 10 9 33 33 H 1.08993 * 109.52301 * 174.60282 * 11 10 9 34 34 H 0.96996 * 120.00198 * 95.03029 * 14 12 11 35 35 H 0.96995 * 119.99985 * 359.97438 * 19 17 15 36 36 H 1.09004 * 109.47657 * 59.99408 * 20 19 17 37 37 H 1.09008 * 109.46800 * 299.99831 * 20 19 17 38 38 H 0.96700 * 113.99957 * 180.02562 * 27 25 12 39 39 H 1.09010 * 109.58538 * 353.41790 * 28 9 7 40 40 H 1.09002 * 109.58870 * 113.69739 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3701 -2.3623 0.3460 10 6 1.8141 -3.6529 -0.1980 11 6 2.0683 -4.6170 0.9651 12 6 0.8133 -4.7006 1.8368 13 1 -0.0271 -5.0411 1.2318 14 7 1.0415 -5.6471 2.9315 15 6 0.8377 -6.9649 2.7364 16 8 0.4647 -7.3676 1.6541 17 6 1.0711 -7.9305 3.8529 18 8 1.4446 -7.5280 4.9351 19 7 0.8678 -9.2485 3.6577 20 6 1.0960 -10.1949 4.7524 21 6 0.7938 -11.6151 4.2700 22 9 1.6337 -11.9318 3.1970 23 9 1.0123 -12.5190 5.3153 24 9 -0.5404 -11.6932 3.8567 25 6 0.4988 -3.3188 2.4147 26 1 -0.3815 -3.3837 3.0543 27 8 1.6131 -2.8576 3.1812 28 6 0.2264 -2.3402 1.2681 29 1 -0.4850 0.8400 -0.0004 30 1 2.7346 -3.5133 -0.7648 31 1 1.0404 -4.0610 -0.8483 32 1 2.9034 -4.2528 1.5636 33 1 2.3057 -5.6059 0.5732 34 1 1.3393 -5.3252 3.7967 35 1 0.5696 -9.5703 2.7926 36 1 0.4413 -9.9485 5.5884 37 1 2.1355 -10.1338 5.0747 38 1 1.4831 -1.9856 3.5787 39 1 0.0993 -1.3343 1.6686 40 1 -0.6773 -2.6387 0.7367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100055414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:42 Heat of formation + Delta-G solvation = -244.975741 kcal Electronic energy + Delta-G solvation = -29929.801011 eV Core-core repulsion = 24944.578445 eV Total energy + Delta-G solvation = -4985.222566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.68887 -48.20349 -48.15558 -40.88537 -39.15631 -37.89271 -35.87143 -34.85165 -34.41502 -32.14953 -30.24637 -29.56446 -29.15402 -25.94034 -24.59170 -23.33036 -22.39101 -21.77087 -20.63859 -19.83883 -19.15898 -18.99721 -18.91602 -17.60883 -17.19387 -17.02107 -16.24527 -15.95465 -15.60817 -15.37489 -15.15224 -14.98781 -14.87011 -14.58284 -14.52664 -14.30874 -14.28772 -14.14489 -13.91279 -13.81730 -13.48189 -13.23390 -12.83496 -12.52266 -12.25495 -12.08576 -11.90883 -11.33788 -11.22881 -10.83051 -10.65545 -10.55369 -10.26468 -10.13210 -9.98728 -9.88449 -9.69714 -9.26217 -8.93820 -8.55520 -6.73690 -5.86534 -3.27557 1.19976 1.73721 2.17581 3.02506 3.09170 3.25002 3.33634 3.41153 3.42583 3.44028 3.71081 4.29524 4.44057 4.51429 4.65790 4.74423 5.19267 5.32104 5.37445 5.42374 5.45705 5.82840 5.93794 6.04023 6.13577 6.33024 6.41113 6.47927 6.64647 6.72350 6.88988 7.08920 7.17698 7.37087 7.50782 7.73990 7.93141 8.19466 8.37944 9.12812 9.75663 10.32130 11.22469 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036134 B = 0.002141 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.704946 B =13074.949131 C =13273.110534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.000 4.000 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.159 3.841 13 H 0.097 0.903 14 N -0.680 5.680 15 C 0.505 3.495 16 O -0.521 6.521 17 C 0.518 3.482 18 O -0.509 6.509 19 N -0.707 5.707 20 C 0.076 3.924 21 C 0.450 3.550 22 F -0.175 7.175 23 F -0.172 7.172 24 F -0.176 7.176 25 C 0.073 3.927 26 H 0.046 0.954 27 O -0.559 6.559 28 C 0.145 3.855 29 H 0.254 0.746 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.415 0.585 35 H 0.421 0.579 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.377 0.623 39 H 0.097 0.903 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 -20.157 10.843 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.056 3.944 13 H 0.114 0.886 14 N -0.332 5.332 15 C 0.284 3.716 16 O -0.397 6.397 17 C 0.300 3.700 18 O -0.383 6.383 19 N -0.364 5.364 20 C -0.049 4.049 21 C 0.395 3.605 22 F -0.157 7.157 23 F -0.153 7.153 24 F -0.157 7.157 25 C 0.011 3.989 26 H 0.064 0.936 27 O -0.365 6.365 28 C 0.018 3.982 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.251 0.749 35 H 0.259 0.741 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.224 0.776 39 H 0.115 0.885 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.154 -20.574 10.634 23.160 hybrid contribution 0.056 1.045 0.145 1.057 sum 0.209 -19.528 10.779 22.307 Atomic orbital electron populations 1.70007 1.05231 1.25592 1.54376 1.25031 0.95299 0.98432 1.01062 0.86290 0.79170 0.83509 0.77783 1.21414 1.21621 1.20454 1.19160 0.92575 0.84629 1.40993 0.91657 1.43879 1.35466 1.01771 1.49356 1.20892 0.98083 0.86362 0.92503 1.22342 0.97328 0.99598 0.98542 1.21258 0.99847 0.86240 0.87043 0.88560 1.46094 1.64855 1.05004 1.17239 1.19739 0.80110 0.84020 0.87759 1.90789 1.45487 1.78086 1.25383 1.20432 0.77882 0.82762 0.88968 1.90800 1.43576 1.78101 1.25778 1.45378 1.69361 1.05988 1.15712 1.22550 1.07130 0.83050 0.92173 1.20456 0.74807 0.89374 0.75878 1.93253 1.71261 1.94124 1.57041 1.93239 1.94505 1.69978 1.57622 1.93251 1.34970 1.96881 1.90598 1.22842 0.87868 0.93654 0.94502 0.93600 1.86349 1.41646 1.38862 1.69602 1.21453 0.89751 0.98393 0.88599 0.93591 0.92230 0.96093 0.90873 0.92715 0.74852 0.74097 0.86176 0.86149 0.77560 0.88483 0.95261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.09 11.20 55.49 0.62 -24.47 16 2 C 0.00 -0.01 4.92 -17.43 -0.09 -0.09 16 3 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.24 -6.42 9.58 -15.06 -0.14 -6.57 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.58 -13.84 2.93 -172.32 -0.51 -14.34 16 10 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 11 C -0.14 -2.46 5.51 -26.61 -0.15 -2.61 16 12 C 0.16 2.65 2.20 -67.89 -0.15 2.50 16 13 H 0.10 1.68 7.58 -51.93 -0.39 1.29 16 14 N -0.68 -9.79 5.04 -54.19 -0.27 -10.06 16 15 C 0.50 6.98 7.85 -11.59 -0.09 6.89 16 16 O -0.52 -8.21 16.14 5.50 0.09 -8.12 16 17 C 0.52 6.02 7.89 -11.58 -0.09 5.92 16 18 O -0.51 -6.69 16.48 5.49 0.09 -6.60 16 19 N -0.71 -6.16 5.41 -60.73 -0.33 -6.48 16 20 C 0.08 0.47 5.64 -4.04 -0.02 0.45 16 21 C 0.45 2.92 3.11 37.16 0.12 3.04 16 22 F -0.18 -1.35 17.18 2.25 0.04 -1.31 16 23 F -0.17 -1.16 17.32 2.25 0.04 -1.12 16 24 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 25 C 0.07 1.26 3.38 -26.61 -0.09 1.17 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 O -0.56 -9.55 12.08 -35.23 -0.43 -9.97 16 28 C 0.15 3.16 4.95 -3.71 -0.02 3.14 16 29 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.39 7.61 -51.93 -0.40 1.00 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.41 5.73 7.73 -40.82 -0.32 5.42 16 35 H 0.42 3.51 7.83 -40.82 -0.32 3.19 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.12 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.38 5.56 9.08 45.56 0.41 5.98 16 39 H 0.10 2.33 6.06 -51.92 -0.31 2.02 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -30.52 352.28 -4.91 -35.42 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -3.82 Total: 10.22 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: -0.75 Total: 16.88 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.49 Total: -55.35 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.25 Total: -24.70 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.12 Total: -3.72 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.52 -4.91 -35.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.553 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds