Wall clock time and date at job start Tue Mar 31 2020 22:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99726 * 2 1 4 4 H 1.48499 * 109.46714 * 269.99110 * 3 2 1 5 5 H 1.48496 * 109.47428 * 29.99493 * 3 2 1 6 6 H 1.48502 * 109.47041 * 149.99585 * 3 2 1 7 7 C 1.38810 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99856 * 163.08771 * 7 2 1 9 9 N 1.36935 * 120.00387 * 343.08715 * 7 2 1 10 10 C 1.46927 * 120.62842 * 151.82757 * 9 7 2 11 11 C 1.53198 * 108.77284 * 126.37510 * 10 9 7 12 12 C 1.53038 * 109.31127 * 54.63139 * 11 10 9 13 13 H 1.09001 * 109.46234 * 58.65081 * 12 11 10 14 14 N 1.46508 * 109.45903 * 178.61575 * 12 11 10 15 15 C 1.34775 * 119.99683 * 275.03002 * 14 12 11 16 16 O 1.21349 * 120.00670 * 359.97438 * 15 14 12 17 17 C 1.49450 * 119.99861 * 179.97438 * 15 14 12 18 18 O 1.21355 * 119.99811 * 359.97438 * 17 15 14 19 19 N 1.34778 * 120.00229 * 180.02562 * 17 15 14 20 20 C 1.46499 * 120.00106 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47040 * 179.97438 * 20 19 17 22 22 F 1.39895 * 109.47417 * 59.99960 * 21 20 19 23 23 F 1.39907 * 109.47001 * 179.97438 * 21 20 19 24 24 F 1.39896 * 109.47289 * 299.99534 * 21 20 19 25 25 C 1.53039 * 109.53140 * 298.62796 * 12 11 10 26 26 H 1.09000 * 109.49982 * 181.32358 * 25 12 11 27 27 O 1.42896 * 109.49800 * 301.42427 * 25 12 11 28 28 C 1.46922 * 120.63259 * 331.81071 * 9 7 2 29 29 H 0.96996 * 120.00114 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.59089 * 6.59142 * 10 9 7 31 31 H 1.08997 * 109.59170 * 246.15699 * 10 9 7 32 32 H 1.09002 * 109.49478 * 294.68174 * 11 10 9 33 33 H 1.08993 * 109.52301 * 174.60282 * 11 10 9 34 34 H 0.96996 * 120.00198 * 95.03029 * 14 12 11 35 35 H 0.96995 * 119.99985 * 359.97438 * 19 17 15 36 36 H 1.09004 * 109.47657 * 59.99408 * 20 19 17 37 37 H 1.09008 * 109.46800 * 299.99831 * 20 19 17 38 38 H 0.96700 * 113.99957 * 180.02562 * 27 25 12 39 39 H 1.09010 * 109.58538 * 353.41790 * 28 9 7 40 40 H 1.09002 * 109.58870 * 113.69739 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2225 -0.2716 9 7 1.3701 -2.3623 0.3460 10 6 1.8141 -3.6529 -0.1980 11 6 2.0683 -4.6170 0.9651 12 6 0.8133 -4.7006 1.8368 13 1 -0.0271 -5.0411 1.2318 14 7 1.0415 -5.6471 2.9315 15 6 0.8377 -6.9649 2.7364 16 8 0.4647 -7.3676 1.6541 17 6 1.0711 -7.9305 3.8529 18 8 1.4446 -7.5280 4.9351 19 7 0.8678 -9.2485 3.6577 20 6 1.0960 -10.1949 4.7524 21 6 0.7938 -11.6151 4.2700 22 9 1.6337 -11.9318 3.1970 23 9 1.0123 -12.5190 5.3153 24 9 -0.5404 -11.6932 3.8567 25 6 0.4988 -3.3188 2.4147 26 1 -0.3815 -3.3837 3.0543 27 8 1.6131 -2.8576 3.1812 28 6 0.2264 -2.3402 1.2681 29 1 -0.4850 0.8400 -0.0004 30 1 2.7346 -3.5133 -0.7648 31 1 1.0404 -4.0610 -0.8483 32 1 2.9034 -4.2528 1.5636 33 1 2.3057 -5.6059 0.5732 34 1 1.3393 -5.3252 3.7967 35 1 0.5696 -9.5703 2.7926 36 1 0.4413 -9.9485 5.5884 37 1 2.1355 -10.1338 5.0747 38 1 1.4831 -1.9856 3.5787 39 1 0.0993 -1.3343 1.6686 40 1 -0.6773 -2.6387 0.7367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100055414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:41 Heat of formation + Delta-G solvation = -269.837103 kcal Electronic energy + Delta-G solvation = -29930.879080 eV Core-core repulsion = 24944.578445 eV Total energy + Delta-G solvation = -4986.300635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.23759 -48.74440 -48.72275 -41.91980 -40.35816 -39.21787 -36.75462 -36.43767 -35.67321 -33.89267 -31.35064 -30.84298 -30.67600 -27.43269 -25.81919 -24.29823 -23.83917 -23.19621 -21.63210 -21.19468 -20.07824 -19.70454 -19.55682 -19.06013 -18.26202 -18.01667 -17.33390 -17.15314 -17.02410 -16.65577 -16.28352 -15.83970 -15.67003 -15.53344 -15.43603 -15.34642 -15.16200 -15.13325 -14.94772 -14.85380 -14.82982 -14.53476 -14.10185 -13.79526 -13.64643 -13.15753 -13.06518 -12.97958 -12.77283 -12.61597 -12.39192 -12.25115 -12.00911 -11.84520 -11.46028 -10.90368 -10.73225 -10.71251 -10.57467 -10.20806 -8.65863 -7.86891 -5.30448 0.20420 0.93021 1.48499 1.51333 1.57066 1.60501 2.00949 2.31599 2.52958 2.57342 2.90568 3.09727 3.24816 3.31366 3.39463 3.67306 3.83786 3.98625 4.05674 4.19852 4.33508 4.38151 4.61034 4.65740 4.69996 4.84012 4.92102 5.08074 5.18026 5.26805 5.44420 5.57397 5.65099 5.67629 6.18306 6.39006 6.52438 6.82822 6.92789 7.16374 7.84426 8.36570 9.19609 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.036134 B = 0.002141 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.704946 B =13074.949131 C =13273.110534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.253 4.253 8 H 0.061 0.939 9 N -0.599 5.599 10 C 0.145 3.855 11 C -0.122 4.122 12 C 0.166 3.834 13 H 0.090 0.910 14 N -0.676 5.676 15 C 0.505 3.495 16 O -0.541 6.541 17 C 0.528 3.472 18 O -0.524 6.524 19 N -0.696 5.696 20 C 0.077 3.923 21 C 0.456 3.544 22 F -0.182 7.182 23 F -0.171 7.171 24 F -0.182 7.182 25 C 0.088 3.912 26 H 0.071 0.929 27 O -0.563 6.563 28 C 0.150 3.850 29 H 0.251 0.749 30 H 0.057 0.943 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.420 0.580 35 H 0.424 0.576 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.388 0.612 39 H 0.072 0.928 40 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -21.323 12.216 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.793 3.207 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.162 4.162 12 C 0.061 3.939 13 H 0.108 0.892 14 N -0.328 5.328 15 C 0.286 3.714 16 O -0.418 6.418 17 C 0.309 3.691 18 O -0.399 6.399 19 N -0.352 5.352 20 C -0.048 4.048 21 C 0.402 3.598 22 F -0.164 7.164 23 F -0.153 7.153 24 F -0.163 7.163 25 C 0.027 3.973 26 H 0.089 0.911 27 O -0.370 6.370 28 C 0.023 3.977 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.258 0.742 35 H 0.262 0.738 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 0.762 -21.790 12.028 24.901 hybrid contribution -0.137 1.307 -0.324 1.354 sum 0.624 -20.483 11.704 23.599 Atomic orbital electron populations 1.70144 1.06403 1.25879 1.55665 1.25677 0.95982 1.01087 1.01401 0.85324 0.78122 0.79876 0.77348 1.21685 1.21739 1.19779 1.19396 0.92605 0.85850 1.40477 0.92115 1.44105 1.35719 1.02105 1.50252 1.20979 0.97696 0.85831 0.93619 1.22117 0.97564 0.99105 0.97454 1.20973 0.98908 0.86511 0.87464 0.89219 1.45865 1.65128 1.05069 1.16712 1.20112 0.79165 0.84008 0.88145 1.90785 1.46201 1.78397 1.26458 1.19830 0.78235 0.83207 0.87856 1.90807 1.44759 1.78429 1.25906 1.45318 1.67944 1.05380 1.16558 1.22765 1.08585 0.81926 0.91506 1.20429 0.74343 0.89486 0.75569 1.93244 1.71452 1.94217 1.57472 1.93243 1.94473 1.69998 1.57559 1.93244 1.35498 1.96922 1.90680 1.22547 0.88976 0.92675 0.93086 0.91086 1.86327 1.41608 1.39720 1.69307 1.21328 0.88526 0.98333 0.89508 0.94016 0.92472 0.96449 0.91758 0.91567 0.74226 0.73793 0.84494 0.84590 0.76347 0.90939 0.97262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.56 11.20 21.65 0.24 -52.32 16 2 C -0.05 -2.47 4.92 84.86 0.42 -2.05 16 3 Si 0.96 43.40 29.59 68.60 2.03 45.43 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.25 -13.42 9.58 84.03 0.81 -12.62 16 8 H 0.06 3.21 7.89 -2.91 -0.02 3.19 16 9 N -0.60 -28.70 2.93 -699.09 -2.05 -30.75 16 10 C 0.14 5.98 6.52 86.36 0.56 6.55 16 11 C -0.12 -4.25 5.51 30.67 0.17 -4.08 16 12 C 0.17 5.32 2.20 45.02 0.10 5.42 16 13 H 0.09 3.05 7.58 -2.39 -0.02 3.03 16 14 N -0.68 -18.22 5.04 -443.73 -2.24 -20.46 16 15 C 0.51 13.07 7.85 87.27 0.69 13.76 16 16 O -0.54 -16.24 16.14 -3.24 -0.05 -16.29 16 17 C 0.53 11.08 7.89 87.27 0.69 11.77 16 18 O -0.52 -12.49 16.48 -3.26 -0.05 -12.55 16 19 N -0.70 -10.52 5.41 -464.40 -2.51 -13.03 16 20 C 0.08 0.74 5.64 86.38 0.49 1.23 16 21 C 0.46 5.00 3.11 71.98 0.22 5.22 16 22 F -0.18 -2.48 17.18 44.97 0.77 -1.71 16 23 F -0.17 -1.96 17.32 44.97 0.78 -1.18 16 24 F -0.18 -2.44 17.18 44.97 0.77 -1.67 16 25 C 0.09 2.96 3.38 30.67 0.10 3.07 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 O -0.56 -18.40 12.08 -148.98 -1.80 -20.20 16 28 C 0.15 6.59 4.95 86.36 0.43 7.02 16 29 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 2.37 7.61 -2.39 -0.02 2.35 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.42 10.71 7.73 -92.71 -0.72 9.99 16 35 H 0.42 6.21 7.83 -92.71 -0.73 5.49 16 36 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.39 10.94 9.08 -74.06 -0.67 10.26 16 39 H 0.07 3.55 6.06 -2.38 -0.01 3.53 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -64.57 352.28 -0.42 -64.99 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -0.97 Total: 24.47 kcal Atomic # 6 Polarization: 30.60 SS G_CDS: 4.67 Total: 35.26 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -6.56 Total: -116.56 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.91 Total: -49.04 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 2.32 Total: -4.56 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.57 -0.42 -64.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.848 kcal (2) G-P(sol) polarization free energy of solvation -64.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds