Wall clock time and date at job start Tue Mar 31 2020 22:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47296 * 272.92762 * 3 2 1 5 5 H 1.48498 * 109.47443 * 32.92887 * 3 2 1 6 6 H 1.48504 * 109.46959 * 152.93107 * 3 2 1 7 7 C 1.38811 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00372 * 339.37384 * 7 2 1 9 9 N 1.36939 * 119.99717 * 159.36729 * 7 2 1 10 10 C 1.46926 * 120.63402 * 332.61600 * 9 7 2 11 11 C 1.53194 * 108.77496 * 233.62793 * 10 9 7 12 12 C 1.53047 * 109.30853 * 305.36191 * 11 10 9 13 13 H 1.08998 * 109.45082 * 301.34703 * 12 11 10 14 14 N 1.46500 * 109.45825 * 181.38617 * 12 11 10 15 15 C 1.34776 * 120.00272 * 84.93158 * 14 12 11 16 16 O 1.21355 * 119.99729 * 359.97438 * 15 14 12 17 17 C 1.49446 * 120.00187 * 180.02562 * 15 14 12 18 18 O 1.21354 * 120.00236 * 359.97438 * 17 15 14 19 19 N 1.34779 * 120.00222 * 179.97438 * 17 15 14 20 20 C 1.46504 * 120.00281 * 180.27253 * 19 17 15 21 21 C 1.52995 * 109.46902 * 179.72741 * 20 19 17 22 22 F 1.39898 * 109.47040 * 60.00536 * 21 20 19 23 23 F 1.39901 * 109.46651 * 180.02562 * 21 20 19 24 24 F 1.39892 * 109.47538 * 300.00106 * 21 20 19 25 25 C 1.53040 * 109.54111 * 61.36581 * 12 11 10 26 26 H 1.09004 * 109.49618 * 58.58358 * 25 12 11 27 27 O 1.42895 * 109.49971 * 178.68439 * 25 12 11 28 28 C 1.46927 * 120.63117 * 152.62739 * 9 7 2 29 29 H 0.97003 * 119.99727 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58711 * 353.40818 * 10 9 7 31 31 H 1.08995 * 109.59185 * 113.83785 * 10 9 7 32 32 H 1.08991 * 109.49910 * 185.41148 * 11 10 9 33 33 H 1.09000 * 109.50096 * 65.30739 * 11 10 9 34 34 H 0.97004 * 119.99931 * 264.92837 * 14 12 11 35 35 H 0.97003 * 119.99572 * 0.02562 * 19 17 15 36 36 H 1.09004 * 109.46985 * 299.72942 * 20 19 17 37 37 H 1.08997 * 109.46634 * 59.73272 * 20 19 17 38 38 H 0.96701 * 114.00344 * 180.02562 * 27 25 12 39 39 H 1.09001 * 109.58166 * 6.58708 * 28 9 7 40 40 H 1.09002 * 109.70705 * 246.23235 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0822 -1.3982 5 1 1.4801 2.6340 0.7610 6 1 3.5774 1.4230 0.6371 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3304 9 7 3.3137 -1.2404 -0.4173 10 6 3.8178 -0.2595 -1.3882 11 6 4.4622 -1.0099 -2.5580 12 6 5.5286 -1.9665 -2.0196 13 1 6.2780 -1.4005 -1.4663 14 7 6.1701 -2.6619 -3.1382 15 6 7.1993 -2.0847 -3.7894 16 8 7.5943 -0.9887 -3.4495 17 6 7.8532 -2.7937 -4.9309 18 8 7.4579 -3.8894 -5.2712 19 7 8.8821 -2.2163 -5.5825 20 6 9.5193 -2.9088 -6.7054 21 6 10.6459 -2.0396 -7.2674 22 9 11.5947 -1.8018 -6.2672 23 9 11.2540 -2.7006 -8.3400 24 9 10.1189 -0.8214 -7.7093 25 6 4.8747 -2.9913 -1.0899 26 1 4.1078 -3.5407 -1.6361 27 8 5.8661 -3.9026 -0.6119 28 6 4.2349 -2.2633 0.0964 29 1 -0.4850 0.8401 -0.0004 30 1 2.9913 0.3490 -1.7554 31 1 4.5605 0.3793 -0.9103 32 1 4.9248 -0.2950 -3.2382 33 1 3.6993 -1.5781 -3.0903 34 1 5.8541 -3.5377 -3.4102 35 1 9.1983 -1.3406 -5.3103 36 1 9.9299 -3.8580 -6.3610 37 1 8.7800 -3.0940 -7.4846 38 1 5.5214 -4.5818 -0.0159 39 1 3.6837 -2.9768 0.7089 40 1 5.0119 -1.7900 0.6968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100055415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:45 Heat of formation + Delta-G solvation = -240.474842 kcal Electronic energy + Delta-G solvation = -29940.875783 eV Core-core repulsion = 24955.848391 eV Total energy + Delta-G solvation = -4985.027392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.70876 -48.22313 -48.17535 -40.95510 -39.31449 -38.07486 -35.92469 -35.72693 -34.55024 -32.15017 -30.52055 -30.17138 -29.30440 -26.06711 -24.58012 -23.29676 -22.86793 -21.92065 -20.75339 -20.20757 -19.17909 -19.12767 -18.98788 -17.64502 -17.25271 -17.08589 -16.65293 -16.30420 -16.02059 -15.60300 -15.16239 -15.02906 -14.85168 -14.61020 -14.59141 -14.57052 -14.32661 -14.30882 -14.19345 -13.95062 -13.54614 -13.27443 -12.90055 -12.62343 -12.54460 -12.35301 -12.11644 -11.96730 -11.64939 -11.28038 -11.10691 -10.28151 -10.25744 -10.10863 -10.02375 -9.96188 -9.76347 -9.60469 -9.09422 -8.72912 -7.14613 -6.05395 -3.44080 1.14904 1.69297 2.14205 2.97487 3.07009 3.16799 3.26594 3.40383 3.44011 3.46297 3.67699 4.12774 4.27990 4.44018 4.48942 4.63050 4.81194 5.01414 5.22931 5.30372 5.38399 5.45611 5.64733 5.67592 5.84223 6.06241 6.15773 6.28556 6.34599 6.44413 6.47028 6.50943 6.69719 7.09327 7.40754 7.69671 7.84001 7.85765 8.20663 8.79251 9.59120 9.93353 11.09831 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002448 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.318242 B =11435.261940 C =12148.317200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.268 4.268 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.126 3.874 11 C -0.142 4.142 12 C 0.159 3.841 13 H 0.095 0.905 14 N -0.678 5.678 15 C 0.509 3.491 16 O -0.519 6.519 17 C 0.520 3.480 18 O -0.509 6.509 19 N -0.707 5.707 20 C 0.076 3.924 21 C 0.449 3.551 22 F -0.176 7.176 23 F -0.172 7.172 24 F -0.175 7.175 25 C 0.079 3.921 26 H 0.065 0.935 27 O -0.570 6.570 28 C 0.124 3.876 29 H 0.264 0.736 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.412 0.588 35 H 0.421 0.579 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.379 0.621 39 H 0.072 0.928 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.849 -7.294 -13.155 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.105 0.895 9 N -0.326 5.326 10 C 0.000 4.000 11 C -0.183 4.183 12 C 0.056 3.944 13 H 0.113 0.887 14 N -0.329 5.329 15 C 0.288 3.712 16 O -0.395 6.395 17 C 0.301 3.699 18 O -0.383 6.383 19 N -0.364 5.364 20 C -0.049 4.049 21 C 0.395 3.605 22 F -0.157 7.157 23 F -0.153 7.153 24 F -0.157 7.157 25 C 0.018 3.982 26 H 0.083 0.917 27 O -0.375 6.375 28 C -0.003 4.003 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.259 0.741 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.226 0.774 39 H 0.090 0.910 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.071 -6.836 -13.493 25.132 hybrid contribution 0.261 0.777 0.132 0.830 sum 20.331 -6.060 -13.361 25.072 Atomic orbital electron populations 1.69831 1.05746 1.26787 1.52226 1.25274 0.95235 0.97683 0.99061 0.86987 0.80142 0.84527 0.77239 1.21400 1.22941 1.19368 1.18878 0.84593 0.94944 1.41146 0.89496 1.44329 1.08603 1.33074 1.46622 1.21401 0.97597 0.92076 0.88929 1.22470 0.97333 0.98489 0.99985 1.21183 0.95183 0.92913 0.85139 0.88680 1.45875 1.31958 1.22387 1.32705 1.19692 0.81718 0.86187 0.83628 1.90796 1.63224 1.19582 1.65908 1.20356 0.80122 0.85828 0.83580 1.90795 1.62253 1.19468 1.65747 1.45373 1.34648 1.23622 1.32751 1.22557 0.94196 0.96003 0.92152 1.20450 0.83703 0.79781 0.76587 1.93253 1.67016 1.94812 1.60619 1.93239 1.84583 1.80530 1.56962 1.93254 1.86069 1.46543 1.89805 1.22739 0.89309 0.90124 0.96038 0.91726 1.86463 1.37562 1.45240 1.68194 1.21555 0.93181 0.92446 0.93122 0.92574 0.90135 0.94967 0.91254 0.90905 0.75249 0.74089 0.86121 0.86115 0.77421 0.90963 0.94681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.97 55.49 0.78 -26.02 16 2 C 0.03 0.76 5.23 -17.43 -0.09 0.67 16 3 Si 0.88 21.69 24.35 -169.99 -4.14 17.55 16 4 H -0.29 -6.80 6.62 56.52 0.37 -6.43 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 6 H -0.27 -6.52 6.64 56.52 0.38 -6.14 16 7 C -0.27 -7.08 10.04 -15.06 -0.15 -7.23 16 8 H 0.09 2.44 8.05 -52.49 -0.42 2.01 16 9 N -0.60 -13.37 2.77 -172.32 -0.48 -13.85 16 10 C 0.13 2.63 4.20 -3.71 -0.02 2.61 16 11 C -0.14 -2.44 5.65 -26.61 -0.15 -2.59 16 12 C 0.16 2.49 2.12 -67.89 -0.14 2.35 16 13 H 0.10 1.64 7.58 -51.93 -0.39 1.25 16 14 N -0.68 -9.19 4.91 -54.19 -0.27 -9.46 16 15 C 0.51 6.88 7.85 -11.59 -0.09 6.78 16 16 O -0.52 -8.13 16.14 5.49 0.09 -8.04 16 17 C 0.52 5.88 7.89 -11.59 -0.09 5.79 16 18 O -0.51 -6.45 16.48 5.49 0.09 -6.36 16 19 N -0.71 -6.06 5.41 -60.73 -0.33 -6.39 16 20 C 0.08 0.46 5.64 -4.04 -0.02 0.44 16 21 C 0.45 2.90 3.11 37.16 0.12 3.01 16 22 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 23 F -0.17 -1.15 17.32 2.25 0.04 -1.11 16 24 F -0.18 -1.34 17.18 2.25 0.04 -1.31 16 25 C 0.08 1.19 3.14 -26.61 -0.08 1.10 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 O -0.57 -7.49 13.16 -35.23 -0.46 -7.95 16 28 C 0.12 2.23 6.14 -3.71 -0.02 2.21 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.08 1.84 4.50 -51.93 -0.23 1.61 16 31 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.41 5.07 8.07 -40.82 -0.33 4.74 16 35 H 0.42 3.49 7.83 -40.82 -0.32 3.17 16 36 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.38 3.44 9.08 45.56 0.41 3.86 16 39 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -32.16 347.52 -3.90 -36.07 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.79 Total: 7.77 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: -0.75 Total: 15.13 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.30 Total: -55.71 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.28 Total: -22.35 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.12 Total: -3.70 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.16 -3.90 -36.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.408 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds