Wall clock time and date at job start Tue Mar 31 2020 22:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47296 * 272.92762 * 3 2 1 5 5 H 1.48498 * 109.47443 * 32.92887 * 3 2 1 6 6 H 1.48504 * 109.46959 * 152.93107 * 3 2 1 7 7 C 1.38811 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00372 * 339.37384 * 7 2 1 9 9 N 1.36939 * 119.99717 * 159.36729 * 7 2 1 10 10 C 1.46926 * 120.63402 * 332.61600 * 9 7 2 11 11 C 1.53194 * 108.77496 * 233.62793 * 10 9 7 12 12 C 1.53047 * 109.30853 * 305.36191 * 11 10 9 13 13 H 1.08998 * 109.45082 * 301.34703 * 12 11 10 14 14 N 1.46500 * 109.45825 * 181.38617 * 12 11 10 15 15 C 1.34776 * 120.00272 * 84.93158 * 14 12 11 16 16 O 1.21355 * 119.99729 * 359.97438 * 15 14 12 17 17 C 1.49446 * 120.00187 * 180.02562 * 15 14 12 18 18 O 1.21354 * 120.00236 * 359.97438 * 17 15 14 19 19 N 1.34779 * 120.00222 * 179.97438 * 17 15 14 20 20 C 1.46504 * 120.00281 * 180.27253 * 19 17 15 21 21 C 1.52995 * 109.46902 * 179.72741 * 20 19 17 22 22 F 1.39898 * 109.47040 * 60.00536 * 21 20 19 23 23 F 1.39901 * 109.46651 * 180.02562 * 21 20 19 24 24 F 1.39892 * 109.47538 * 300.00106 * 21 20 19 25 25 C 1.53040 * 109.54111 * 61.36581 * 12 11 10 26 26 H 1.09004 * 109.49618 * 58.58358 * 25 12 11 27 27 O 1.42895 * 109.49971 * 178.68439 * 25 12 11 28 28 C 1.46927 * 120.63117 * 152.62739 * 9 7 2 29 29 H 0.97003 * 119.99727 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58711 * 353.40818 * 10 9 7 31 31 H 1.08995 * 109.59185 * 113.83785 * 10 9 7 32 32 H 1.08991 * 109.49910 * 185.41148 * 11 10 9 33 33 H 1.09000 * 109.50096 * 65.30739 * 11 10 9 34 34 H 0.97004 * 119.99931 * 264.92837 * 14 12 11 35 35 H 0.97003 * 119.99572 * 0.02562 * 19 17 15 36 36 H 1.09004 * 109.46985 * 299.72942 * 20 19 17 37 37 H 1.08997 * 109.46634 * 59.73272 * 20 19 17 38 38 H 0.96701 * 114.00344 * 180.02562 * 27 25 12 39 39 H 1.09001 * 109.58166 * 6.58708 * 28 9 7 40 40 H 1.09002 * 109.70705 * 246.23235 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4358 2.0822 -1.3982 5 1 1.4801 2.6340 0.7610 6 1 3.5774 1.4230 0.6371 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3304 9 7 3.3137 -1.2404 -0.4173 10 6 3.8178 -0.2595 -1.3882 11 6 4.4622 -1.0099 -2.5580 12 6 5.5286 -1.9665 -2.0196 13 1 6.2780 -1.4005 -1.4663 14 7 6.1701 -2.6619 -3.1382 15 6 7.1993 -2.0847 -3.7894 16 8 7.5943 -0.9887 -3.4495 17 6 7.8532 -2.7937 -4.9309 18 8 7.4579 -3.8894 -5.2712 19 7 8.8821 -2.2163 -5.5825 20 6 9.5193 -2.9088 -6.7054 21 6 10.6459 -2.0396 -7.2674 22 9 11.5947 -1.8018 -6.2672 23 9 11.2540 -2.7006 -8.3400 24 9 10.1189 -0.8214 -7.7093 25 6 4.8747 -2.9913 -1.0899 26 1 4.1078 -3.5407 -1.6361 27 8 5.8661 -3.9026 -0.6119 28 6 4.2349 -2.2633 0.0964 29 1 -0.4850 0.8401 -0.0004 30 1 2.9913 0.3490 -1.7554 31 1 4.5605 0.3793 -0.9103 32 1 4.9248 -0.2950 -3.2382 33 1 3.6993 -1.5781 -3.0903 34 1 5.8541 -3.5377 -3.4102 35 1 9.1983 -1.3406 -5.3103 36 1 9.9299 -3.8580 -6.3610 37 1 8.7800 -3.0940 -7.4846 38 1 5.5214 -4.5818 -0.0159 39 1 3.6837 -2.9768 0.7089 40 1 5.0119 -1.7900 0.6968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100055415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:44 Heat of formation + Delta-G solvation = -268.578072 kcal Electronic energy + Delta-G solvation = -29942.094431 eV Core-core repulsion = 24955.848391 eV Total energy + Delta-G solvation = -4986.246040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.25004 -48.75640 -48.73613 -41.94855 -40.45137 -39.28358 -37.14008 -36.72621 -35.73292 -34.01366 -32.03161 -30.91401 -30.68913 -27.48082 -25.74285 -24.32478 -24.17297 -23.30278 -21.71129 -21.52687 -20.12830 -19.71711 -19.56941 -18.94372 -18.32339 -18.13018 -17.97073 -17.44071 -17.12606 -16.69696 -16.24427 -16.18490 -15.87047 -15.61210 -15.51690 -15.30693 -15.14562 -15.10533 -14.91519 -14.86201 -14.84513 -14.60902 -14.17188 -14.03673 -13.92355 -13.66759 -13.20946 -13.07657 -12.99759 -12.92220 -12.67218 -12.14997 -11.90287 -11.64031 -11.48507 -11.17775 -10.93330 -10.72566 -10.66408 -10.30389 -9.01404 -8.18266 -5.52075 0.19226 0.91156 1.30211 1.42527 1.49936 1.55680 1.99901 2.27645 2.39947 2.56209 2.89371 2.90585 3.07001 3.12921 3.29061 3.33357 3.74744 3.97059 4.04696 4.07235 4.18732 4.22041 4.31284 4.49805 4.64543 4.67639 4.75543 4.84970 4.88023 5.03146 5.15190 5.24605 5.62418 5.82451 6.10703 6.14274 6.49948 6.78435 6.82172 6.91619 7.56821 7.95827 9.00747 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.002448 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.318242 B =11435.261940 C =12148.317200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.029 4.029 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.311 1.311 6 H -0.262 1.262 7 C -0.249 4.249 8 H 0.063 0.937 9 N -0.614 5.614 10 C 0.121 3.879 11 C -0.131 4.131 12 C 0.165 3.835 13 H 0.082 0.918 14 N -0.673 5.673 15 C 0.507 3.493 16 O -0.542 6.542 17 C 0.529 3.471 18 O -0.522 6.522 19 N -0.697 5.697 20 C 0.077 3.923 21 C 0.456 3.544 22 F -0.182 7.182 23 F -0.171 7.171 24 F -0.183 7.183 25 C 0.098 3.902 26 H 0.070 0.930 27 O -0.569 6.569 28 C 0.120 3.880 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.420 0.580 35 H 0.423 0.577 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.399 0.601 39 H 0.077 0.923 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.107 -8.170 -14.288 27.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.224 4.224 3 Si 0.766 3.234 4 H -0.201 1.201 5 H -0.240 1.240 6 H -0.187 1.187 7 C -0.378 4.378 8 H 0.080 0.920 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.171 4.171 12 C 0.060 3.940 13 H 0.100 0.900 14 N -0.324 5.324 15 C 0.287 3.713 16 O -0.419 6.419 17 C 0.309 3.691 18 O -0.398 6.398 19 N -0.353 5.353 20 C -0.048 4.048 21 C 0.401 3.599 22 F -0.164 7.164 23 F -0.153 7.153 24 F -0.164 7.164 25 C 0.036 3.964 26 H 0.088 0.912 27 O -0.376 6.376 28 C -0.006 4.006 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.257 0.743 35 H 0.261 0.739 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.402 -7.748 -14.649 27.866 hybrid contribution -0.346 0.947 0.483 1.118 sum 22.056 -6.801 -14.166 27.082 Atomic orbital electron populations 1.69946 1.07259 1.27242 1.55289 1.25836 0.95743 1.00659 1.00199 0.86070 0.78849 0.80844 0.77620 1.20142 1.24038 1.18692 1.18861 0.86236 0.93814 1.38892 0.91954 1.44414 1.07904 1.34243 1.47398 1.21386 0.96959 0.92163 0.89902 1.22281 0.97650 0.98713 0.98460 1.20912 0.94392 0.92876 0.85784 0.89954 1.45693 1.31976 1.22559 1.32169 1.20087 0.81373 0.85909 0.83902 1.90788 1.63837 1.20648 1.66670 1.19806 0.80620 0.85472 0.83176 1.90801 1.62952 1.19880 1.66139 1.45330 1.33620 1.23593 1.32744 1.22771 0.94293 0.96060 0.91659 1.20441 0.83591 0.79466 0.76375 1.93244 1.67361 1.94856 1.60905 1.93242 1.84589 1.80470 1.56953 1.93244 1.86143 1.47138 1.89894 1.22317 0.89475 0.90010 0.94553 0.91205 1.86442 1.36978 1.45427 1.68774 1.21739 0.92583 0.91689 0.94560 0.92878 0.92310 0.94806 0.90393 0.90800 0.74297 0.73854 0.84437 0.84534 0.75101 0.90433 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.90 13.97 21.65 0.30 -57.60 16 2 C -0.03 -1.63 5.23 84.86 0.44 -1.19 16 3 Si 0.94 45.29 24.35 68.60 1.67 46.96 16 4 H -0.27 -12.60 6.62 99.48 0.66 -11.94 16 5 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 6 H -0.26 -12.23 6.64 99.48 0.66 -11.57 16 7 C -0.25 -13.26 10.04 84.03 0.84 -12.42 16 8 H 0.06 3.58 8.05 -2.91 -0.02 3.55 16 9 N -0.61 -26.82 2.77 -699.10 -1.94 -28.76 16 10 C 0.12 4.93 4.20 86.36 0.36 5.29 16 11 C -0.13 -4.27 5.65 30.67 0.17 -4.09 16 12 C 0.16 4.82 2.12 45.02 0.10 4.91 16 13 H 0.08 2.68 7.58 -2.39 -0.02 2.66 16 14 N -0.67 -16.69 4.91 -443.73 -2.18 -18.87 16 15 C 0.51 12.65 7.85 87.27 0.69 13.34 16 16 O -0.54 -16.02 16.14 -3.26 -0.05 -16.08 16 17 C 0.53 10.69 7.89 87.27 0.69 11.38 16 18 O -0.52 -11.85 16.48 -3.26 -0.05 -11.91 16 19 N -0.70 -10.29 5.41 -464.40 -2.51 -12.80 16 20 C 0.08 0.71 5.64 86.38 0.49 1.20 16 21 C 0.46 4.92 3.11 71.98 0.22 5.15 16 22 F -0.18 -2.42 17.18 44.97 0.77 -1.65 16 23 F -0.17 -1.93 17.32 44.97 0.78 -1.15 16 24 F -0.18 -2.48 17.18 44.97 0.77 -1.71 16 25 C 0.10 2.71 3.14 30.67 0.10 2.80 16 26 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 27 O -0.57 -13.22 13.16 -148.98 -1.96 -15.18 16 28 C 0.12 4.12 6.14 86.36 0.53 4.65 16 29 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.06 2.64 4.50 -2.39 -0.01 2.63 16 31 H 0.03 1.37 7.08 -2.39 -0.02 1.35 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.42 9.24 8.07 -92.71 -0.75 8.49 16 35 H 0.42 6.15 7.83 -92.71 -0.73 5.42 16 36 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.40 5.93 9.08 -74.06 -0.67 5.26 16 39 H 0.08 2.55 7.93 -2.39 -0.02 2.53 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.95 347.52 -0.86 -69.82 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -1.10 Total: 17.89 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 4.63 Total: 31.03 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -6.32 Total: -118.03 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -2.07 Total: -43.16 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 2.32 Total: -4.51 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.67 Total: 46.96 kcal Total: -68.95 -0.86 -69.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100055415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.760 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds