Wall clock time and date at job start Tue Mar 31 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86798 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46988 * 269.99684 * 3 2 1 5 5 H 1.48501 * 109.46982 * 29.99284 * 3 2 1 6 6 H 1.48498 * 109.46926 * 149.99447 * 3 2 1 7 7 C 1.38947 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99854 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.34784 * 120.00041 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99898 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99616 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46676 * 180.02562 * 12 10 9 14 14 C 1.46907 * 111.00120 * 180.02562 * 13 12 10 15 15 C 1.53781 * 113.61543 * 205.00142 * 14 13 12 16 16 C 1.53784 * 87.07679 * 219.93245 * 15 14 13 17 17 C 1.52997 * 113.61115 * 139.98030 * 16 15 14 18 18 N 1.46499 * 109.47078 * 176.52419 * 17 16 15 19 19 C 1.34782 * 119.99988 * 179.97438 * 18 17 16 20 20 O 1.21602 * 119.99872 * 0.02562 * 19 18 17 21 21 C 1.47448 * 120.00140 * 180.02562 * 19 18 17 22 22 C 1.37974 * 124.15798 * 180.02562 * 21 19 18 23 23 S 1.72101 * 104.03589 * 179.97438 * 22 21 19 24 24 N 1.56401 * 96.15383 * 0.02562 * 23 22 21 25 25 N 1.27414 * 109.87608 * 359.97438 * 24 23 22 26 26 C 1.53783 * 87.17381 * 25.39113 * 16 15 14 27 27 H 0.96994 * 120.00040 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00296 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47559 * 60.00324 * 12 10 9 30 30 H 1.09000 * 109.47217 * 300.00069 * 12 10 9 31 31 H 1.00900 * 111.00073 * 303.95358 * 13 12 10 32 32 H 1.09001 * 112.84615 * 336.19659 * 14 13 12 33 33 H 1.08993 * 113.61288 * 105.38652 * 15 14 13 34 34 H 1.08994 * 113.61325 * 334.47895 * 15 14 13 35 35 H 1.09000 * 113.61322 * 270.79637 * 16 15 14 36 36 H 1.09000 * 109.47271 * 56.52944 * 17 16 15 37 37 H 1.08996 * 109.47652 * 296.52821 * 17 16 15 38 38 H 0.97001 * 120.00482 * 0.02562 * 18 17 16 39 39 H 1.08000 * 127.98110 * 359.95218 * 22 21 19 40 40 H 1.08999 * 113.61437 * 89.15928 * 26 16 15 41 41 H 1.08996 * 113.60946 * 220.05553 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 0.0007 14 6 1.4980 -7.2709 -0.0005 15 6 2.3263 -8.4214 0.5956 16 6 1.7613 -9.3057 -0.5285 17 6 2.7898 -10.2671 -1.1274 18 7 2.1387 -11.1186 -2.1261 19 6 2.8550 -12.0479 -2.7892 20 8 4.0416 -12.1800 -2.5582 21 6 2.1999 -12.9046 -3.7947 22 6 2.8492 -13.8811 -4.5218 23 16 1.6159 -14.5475 -5.5202 24 7 0.4631 -13.6280 -4.9989 25 7 0.9121 -12.8311 -4.1119 26 6 1.5745 -8.0162 -1.3453 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3907 0.0005 29 1 0.6174 -4.9205 -0.8903 30 1 0.6167 -4.9208 0.8897 31 1 2.8338 -5.9124 -0.7802 32 1 0.4879 -7.2049 0.4038 33 1 2.0024 -8.7218 1.5920 34 1 3.4028 -8.2647 0.5286 35 1 0.8239 -9.7973 -0.2679 36 1 3.2088 -10.8896 -0.3369 37 1 3.5879 -9.6960 -1.6017 38 1 1.1923 -11.0130 -2.3106 39 1 3.8909 -14.1622 -4.4753 40 1 2.4451 -7.7486 -1.9440 41 1 0.6447 -7.9903 -1.9135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100541698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:01 Heat of formation + Delta-G solvation = -6.913227 kcal Electronic energy + Delta-G solvation = -25052.939257 eV Core-core repulsion = 21094.942218 eV Total energy + Delta-G solvation = -3957.997038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16945 -40.81156 -40.20737 -39.64375 -36.28469 -35.86037 -34.47205 -33.27243 -33.19154 -29.67267 -28.28275 -27.61491 -26.54930 -25.87206 -24.51364 -22.45273 -21.95059 -21.29675 -20.76496 -20.04839 -19.78099 -18.05774 -17.66326 -17.20828 -17.13253 -16.87683 -16.66242 -16.36209 -16.24193 -16.01190 -15.72211 -15.46889 -14.99361 -14.92181 -14.36424 -14.01419 -13.69442 -13.55772 -13.51808 -13.32523 -13.07628 -12.98865 -12.84164 -12.65473 -12.42542 -12.13289 -11.93544 -11.67886 -11.51283 -11.36451 -11.30007 -11.21699 -11.19749 -10.92745 -10.32886 -10.20160 -10.01729 -9.20147 -8.46951 -5.95790 -0.95926 -0.06650 0.28604 0.51584 1.37815 1.41581 1.54535 1.96686 1.99990 2.05334 2.29367 2.71913 2.97630 3.20284 3.50436 3.58542 3.62144 3.66333 3.87107 3.93621 4.06683 4.26022 4.34136 4.36049 4.44344 4.52600 4.60339 4.70827 4.85011 4.89346 4.94166 5.11588 5.20912 5.30919 5.40406 5.47258 5.94641 6.18376 6.20866 6.44042 6.51288 6.60303 6.94417 7.12435 7.56202 8.11771 8.70388 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.001501 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.633227 B =18655.944522 C =19047.238528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.066 3.934 13 N -0.673 5.673 14 C 0.061 3.939 15 C -0.114 4.114 16 C -0.104 4.104 17 C 0.132 3.868 18 N -0.698 5.698 19 C 0.600 3.400 20 O -0.560 6.560 21 C -0.046 4.046 22 C -0.239 4.239 23 S 0.562 5.438 24 N -0.332 5.332 25 N -0.232 5.232 26 C -0.161 4.161 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.344 0.656 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.228 0.772 40 H 0.075 0.925 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -32.578 -9.661 34.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.304 5.304 14 C -0.049 4.049 15 C -0.153 4.153 16 C -0.123 4.123 17 C 0.009 3.991 18 N -0.348 5.348 19 C 0.382 3.618 20 O -0.438 6.438 21 C -0.194 4.194 22 C -0.395 4.395 23 S 0.697 5.303 24 N -0.313 5.313 25 N -0.101 5.101 26 C -0.200 4.200 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.163 0.837 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.244 0.756 40 H 0.093 0.907 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.925 -32.854 -9.657 34.298 hybrid contribution 0.450 1.712 -0.058 1.771 sum -1.474 -31.143 -9.715 32.656 Atomic orbital electron populations 1.69670 1.06796 1.29303 1.50284 1.26039 0.96563 1.02393 0.96239 0.84923 0.77866 0.76867 0.78642 1.19619 1.19453 1.19870 1.19675 0.92711 0.84133 1.50027 0.90412 1.41940 1.09333 1.04717 1.65052 1.20985 0.88287 0.86303 0.82110 1.90486 1.15985 1.88014 1.56703 1.21580 0.94106 0.88038 1.02957 1.60065 1.18551 1.00786 1.51039 1.23238 0.98164 0.86883 0.96644 1.23017 1.00404 0.93619 0.98280 1.22554 0.99486 0.93364 0.96906 1.21461 0.95362 0.91924 0.90328 1.45832 1.14176 1.35022 1.39804 1.16876 0.85369 0.79720 0.79800 1.90837 1.15556 1.70612 1.66748 1.22568 0.90393 1.02367 1.04072 1.29295 1.10646 0.99269 1.00324 1.81261 0.90354 1.29477 1.29189 1.78332 1.28034 1.10919 1.14025 1.71558 1.11717 1.17487 1.09385 1.23801 1.02604 0.96506 0.97106 0.91284 0.76940 0.91590 0.87757 0.83677 0.87189 0.89924 0.90405 0.86309 0.90737 0.91961 0.74490 0.75569 0.90658 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 3 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 10 C 0.44 20.99 7.82 87.66 0.69 21.68 16 11 O -0.63 -35.30 15.78 -3.04 -0.05 -35.35 16 12 C 0.07 2.23 6.01 85.56 0.51 2.74 16 13 N -0.67 -20.93 6.25 -492.53 -3.08 -24.01 16 14 C 0.06 1.29 4.18 45.50 0.19 1.48 16 15 C -0.11 -2.08 7.44 31.12 0.23 -1.85 16 16 C -0.10 -1.48 3.75 -10.27 -0.04 -1.51 16 17 C 0.13 2.19 5.50 86.38 0.47 2.67 16 18 N -0.70 -11.52 5.55 -466.35 -2.59 -14.11 16 19 C 0.60 12.05 7.81 86.67 0.68 12.72 16 20 O -0.56 -14.46 16.80 -4.04 -0.07 -14.52 16 21 C -0.05 -0.76 6.87 41.36 0.28 -0.47 16 22 C -0.24 -2.34 11.21 67.76 0.76 -1.58 16 23 S 0.56 3.53 23.38 -56.49 -1.32 2.21 16 24 N -0.33 -5.04 12.49 37.02 0.46 -4.58 16 25 N -0.23 -4.07 11.24 -50.35 -0.57 -4.64 16 26 C -0.16 -2.83 7.26 31.18 0.23 -2.61 16 27 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.10 3.19 8.13 -2.39 -0.02 3.17 16 31 H 0.34 11.46 7.91 -89.69 -0.71 10.75 16 32 H 0.11 2.06 7.87 -2.39 -0.02 2.04 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.22 7.87 -2.39 -0.02 1.21 16 38 H 0.42 5.73 8.06 -92.71 -0.75 4.98 16 39 H 0.23 1.23 8.06 -2.91 -0.02 1.20 16 40 H 0.07 1.52 7.61 -2.39 -0.02 1.51 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.99 371.40 -2.31 -78.30 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -1.07 Total: 37.78 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 5.29 Total: 14.53 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -7.11 Total: -128.27 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.12 Total: -49.88 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.32 Total: 2.21 kcal Total: -75.99 -2.31 -78.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100541698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.384 kcal (2) G-P(sol) polarization free energy of solvation -75.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds