Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48501 * 109.47337 * 269.99773 * 3 2 1 5 5 H 1.48503 * 109.47063 * 29.99810 * 3 2 1 6 6 H 1.48504 * 109.47527 * 149.99533 * 3 2 1 7 7 C 1.38801 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00081 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99802 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46873 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99825 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00256 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47252 * 179.97438 * 14 13 11 16 16 H 1.09004 * 110.06392 * 65.24754 * 15 14 13 17 17 C 1.53997 * 109.91647 * 186.45521 * 15 14 13 18 18 C 1.54593 * 105.14126 * 120.58067 * 17 15 14 19 19 C 1.54943 * 102.91873 * 21.95438 * 18 17 15 20 20 N 1.47906 * 109.91763 * 304.04564 * 15 14 13 21 21 C 1.38990 * 110.99986 * 94.80201 * 20 15 14 22 22 C 1.39072 * 119.68786 * 180.02562 * 21 20 15 23 23 C 1.38381 * 119.15638 * 179.97438 * 22 21 20 24 24 C 1.38759 * 118.53513 * 359.97438 * 23 22 21 25 25 C 1.38370 * 119.30206 * 0.02562 * 24 23 22 26 26 F 1.35103 * 119.59829 * 179.97438 * 25 24 23 27 27 N 1.32134 * 120.79727 * 359.73860 * 25 24 23 28 28 H 0.97001 * 119.99392 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47226 * 59.99856 * 10 9 7 30 30 H 1.09005 * 109.47388 * 300.00095 * 10 9 7 31 31 H 0.97006 * 120.00002 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.47142 * 60.00037 * 14 13 11 33 33 H 1.08995 * 109.47139 * 299.99974 * 14 13 11 34 34 H 1.09005 * 110.30580 * 239.49516 * 17 15 14 35 35 H 1.08998 * 110.30936 * 1.55862 * 17 15 14 36 36 H 1.08999 * 110.72465 * 140.31492 * 18 17 15 37 37 H 1.09004 * 110.72424 * 263.42176 * 18 17 15 38 38 H 1.08995 * 110.66363 * 81.02624 * 19 18 17 39 39 H 1.09004 * 110.66081 * 203.98526 * 19 18 17 40 40 H 1.07997 * 120.41987 * 359.95385 * 22 21 20 41 41 H 1.07999 * 120.72930 * 180.02562 * 23 22 21 42 42 H 1.07993 * 120.34704 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3300 -7.7152 0.0003 15 6 3.5021 -8.6987 0.0001 16 1 4.0641 -8.6107 0.9299 17 6 2.9791 -10.1379 -0.1627 18 6 3.6467 -10.6666 -1.4529 19 6 4.8878 -9.7510 -1.6009 20 7 4.3884 -8.4262 -1.1521 21 6 5.4406 -7.5952 -0.7856 22 6 6.3861 -7.2218 -1.7346 23 6 7.4289 -6.3937 -1.3578 24 6 7.4914 -5.9645 -0.0397 25 6 6.5168 -6.3744 0.8529 26 9 6.5721 -5.9604 2.1378 27 7 5.5301 -7.1620 0.4628 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8895 31 1 3.8006 -6.1837 0.0006 32 1 1.7217 -7.8753 -0.8899 33 1 1.7211 -7.8751 0.8900 34 1 3.2737 -10.7465 0.6924 35 1 1.8943 -10.1365 -0.2694 36 1 3.9472 -11.7075 -1.3331 37 1 2.9780 -10.5555 -2.3066 38 1 5.6982 -10.0947 -0.9581 39 1 5.2139 -9.7102 -2.6403 40 1 6.3078 -7.5739 -2.7525 41 1 8.1770 -6.0877 -2.0740 42 1 8.2927 -5.3180 0.2861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100787924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = -18.892248 kcal Electronic energy + Delta-G solvation = -27100.120131 eV Core-core repulsion = 23121.683682 eV Total energy + Delta-G solvation = -3978.436449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.24786 -41.39932 -39.11071 -38.47877 -34.36672 -33.48170 -32.66151 -32.37387 -30.68917 -29.28958 -28.70954 -25.53239 -25.05011 -24.07364 -23.51731 -21.67810 -20.65301 -20.01405 -18.58495 -17.87534 -17.42724 -16.74359 -16.48094 -16.34536 -16.08356 -15.91972 -15.36030 -14.95534 -14.75447 -14.54765 -14.26451 -14.02598 -13.82066 -13.61509 -13.31187 -13.05993 -12.86476 -12.64138 -12.51132 -12.48129 -12.02727 -11.73706 -11.70579 -11.43322 -11.02323 -10.99660 -10.96783 -10.71234 -10.53914 -10.15760 -9.91836 -9.75407 -9.24651 -9.01605 -8.64885 -8.58222 -8.16190 -6.42778 -6.16194 -3.85777 0.53771 0.70594 2.80787 3.11306 3.16439 3.25216 3.26985 3.31706 3.38286 3.45739 3.84160 4.06742 4.19409 4.25852 4.33426 4.47881 4.58493 4.66386 4.75689 4.78863 4.97673 5.13544 5.18600 5.23696 5.27479 5.33352 5.35658 5.37705 5.47708 5.59457 5.66478 5.68367 5.72618 5.77060 5.97304 5.97987 6.07772 6.18034 6.22462 6.65264 6.84408 7.24592 7.64848 7.93571 8.40817 8.78952 9.28864 10.91303 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012668 B = 0.003260 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.735588 B = 8587.218879 C =10011.720400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.071 0.929 9 S -0.057 6.057 10 C -0.151 4.151 11 C 0.529 3.471 12 O -0.523 6.523 13 N -0.730 5.730 14 C 0.141 3.859 15 C 0.051 3.949 16 H 0.097 0.903 17 C -0.126 4.126 18 C -0.123 4.123 19 C 0.045 3.955 20 N -0.454 5.454 21 C 0.338 3.662 22 C -0.190 4.190 23 C -0.023 4.023 24 C -0.219 4.219 25 C 0.337 3.663 26 F -0.108 7.108 27 N -0.556 5.556 28 H 0.268 0.732 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.395 0.605 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.886 -23.021 -3.640 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.089 0.911 9 S 0.169 5.831 10 C -0.302 4.302 11 C 0.315 3.685 12 O -0.398 6.398 13 N -0.388 5.388 14 C 0.016 3.984 15 C -0.056 4.056 16 H 0.115 0.885 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.080 4.080 20 N -0.172 5.172 21 C 0.107 3.893 22 C -0.213 4.213 23 C -0.049 4.049 24 C -0.241 4.241 25 C 0.183 3.817 26 F -0.087 7.087 27 N -0.277 5.277 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 14.786 -23.255 -3.411 27.768 hybrid contribution 3.405 1.542 0.304 3.750 sum 18.191 -21.714 -3.106 28.497 Atomic orbital electron populations 1.70027 1.05923 1.27353 1.47016 1.24986 0.95026 0.98963 0.94617 0.86175 0.79436 0.81621 0.78306 1.20290 1.20747 1.19714 1.22880 0.94901 0.91766 1.58735 0.91053 1.85342 1.04947 0.96110 1.96662 1.23507 1.06416 0.95804 1.04473 1.20256 0.86558 0.86322 0.75353 1.90676 1.15288 1.85689 1.48111 1.46132 1.10339 1.05253 1.77050 1.21257 0.94322 0.80587 1.02187 1.22824 0.94046 0.95128 0.93649 0.88507 1.22446 1.02031 0.93777 0.98223 1.22522 0.96250 0.98662 0.98624 1.23346 0.97463 0.85532 1.01686 1.61977 1.12037 1.12167 1.30983 1.19637 0.89368 0.93859 0.86454 1.21613 0.95921 1.02822 1.00901 1.21398 0.96394 0.92180 0.94942 1.21768 1.01930 1.06060 0.94324 1.17896 0.91191 0.92411 0.80167 1.91673 1.95401 1.87122 1.34458 1.66725 1.25750 1.16544 1.18725 0.92240 0.89645 0.89748 0.76671 0.91240 0.91130 0.90596 0.89721 0.90160 0.89910 0.92437 0.88748 0.83564 0.83241 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.85 13.22 55.49 0.73 -26.12 16 2 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 3 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -15.88 9.50 30.94 0.29 -15.58 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.45 6.16 36.01 0.22 -3.23 16 11 C 0.53 11.39 7.85 -10.98 -0.09 11.30 16 12 O -0.52 -12.97 15.86 5.56 0.09 -12.88 16 13 N -0.73 -12.43 5.40 -60.30 -0.33 -12.76 16 14 C 0.14 1.98 5.15 -4.04 -0.02 1.96 16 15 C 0.05 0.53 2.59 -66.64 -0.17 0.36 16 16 H 0.10 1.12 6.50 -51.93 -0.34 0.79 16 17 C -0.13 -0.92 6.57 -25.37 -0.17 -1.08 16 18 C -0.12 -0.69 7.06 -24.87 -0.18 -0.87 16 19 C 0.04 0.29 6.05 -1.90 -0.01 0.28 16 20 N -0.45 -4.44 4.82 -161.79 -0.78 -5.22 16 21 C 0.34 3.52 5.01 -155.02 -0.78 2.74 16 22 C -0.19 -1.53 9.46 -39.22 -0.37 -1.90 16 23 C -0.02 -0.16 10.16 -39.34 -0.40 -0.56 16 24 C -0.22 -1.86 10.08 -39.34 -0.40 -2.26 16 25 C 0.34 3.85 8.40 -17.37 -0.15 3.71 16 26 F -0.11 -1.36 17.29 2.25 0.04 -1.32 16 27 N -0.56 -6.70 6.22 -12.78 -0.08 -6.78 16 28 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 30 H 0.08 1.81 8.14 -51.91 -0.42 1.39 16 31 H 0.40 6.30 4.78 -40.82 -0.20 6.10 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.35 8.00 -51.93 -0.42 -0.06 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.15 0.88 8.05 -52.49 -0.42 0.46 16 41 H 0.15 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -36.71 366.16 -9.89 -46.60 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.54 Total: 2.93 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.30 Total: -3.09 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.45 Total: -50.87 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.09 Total: -12.88 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.71 -9.89 -46.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.707 kcal (2) G-P(sol) polarization free energy of solvation -36.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds