Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48501 * 109.47337 * 269.99773 * 3 2 1 5 5 H 1.48503 * 109.47063 * 29.99810 * 3 2 1 6 6 H 1.48504 * 109.47527 * 149.99533 * 3 2 1 7 7 C 1.38801 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00081 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99802 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46873 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99825 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00256 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47252 * 179.97438 * 14 13 11 16 16 H 1.09004 * 110.06392 * 65.24754 * 15 14 13 17 17 C 1.53997 * 109.91647 * 186.45521 * 15 14 13 18 18 C 1.54593 * 105.14126 * 120.58067 * 17 15 14 19 19 C 1.54943 * 102.91873 * 21.95438 * 18 17 15 20 20 N 1.47906 * 109.91763 * 304.04564 * 15 14 13 21 21 C 1.38990 * 110.99986 * 94.80201 * 20 15 14 22 22 C 1.39072 * 119.68786 * 180.02562 * 21 20 15 23 23 C 1.38381 * 119.15638 * 179.97438 * 22 21 20 24 24 C 1.38759 * 118.53513 * 359.97438 * 23 22 21 25 25 C 1.38370 * 119.30206 * 0.02562 * 24 23 22 26 26 F 1.35103 * 119.59829 * 179.97438 * 25 24 23 27 27 N 1.32134 * 120.79727 * 359.73860 * 25 24 23 28 28 H 0.97001 * 119.99392 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47226 * 59.99856 * 10 9 7 30 30 H 1.09005 * 109.47388 * 300.00095 * 10 9 7 31 31 H 0.97006 * 120.00002 * 359.97438 * 13 11 10 32 32 H 1.09000 * 109.47142 * 60.00037 * 14 13 11 33 33 H 1.08995 * 109.47139 * 299.99974 * 14 13 11 34 34 H 1.09005 * 110.30580 * 239.49516 * 17 15 14 35 35 H 1.08998 * 110.30936 * 1.55862 * 17 15 14 36 36 H 1.08999 * 110.72465 * 140.31492 * 18 17 15 37 37 H 1.09004 * 110.72424 * 263.42176 * 18 17 15 38 38 H 1.08995 * 110.66363 * 81.02624 * 19 18 17 39 39 H 1.09004 * 110.66081 * 203.98526 * 19 18 17 40 40 H 1.07997 * 120.41987 * 359.95385 * 22 21 20 41 41 H 1.07999 * 120.72930 * 180.02562 * 23 22 21 42 42 H 1.07993 * 120.34704 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3300 -7.7152 0.0003 15 6 3.5021 -8.6987 0.0001 16 1 4.0641 -8.6107 0.9299 17 6 2.9791 -10.1379 -0.1627 18 6 3.6467 -10.6666 -1.4529 19 6 4.8878 -9.7510 -1.6009 20 7 4.3884 -8.4262 -1.1521 21 6 5.4406 -7.5952 -0.7856 22 6 6.3861 -7.2218 -1.7346 23 6 7.4289 -6.3937 -1.3578 24 6 7.4914 -5.9645 -0.0397 25 6 6.5168 -6.3744 0.8529 26 9 6.5721 -5.9604 2.1378 27 7 5.5301 -7.1620 0.4628 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1244 -3.7315 -0.8895 31 1 3.8006 -6.1837 0.0006 32 1 1.7217 -7.8753 -0.8899 33 1 1.7211 -7.8751 0.8900 34 1 3.2737 -10.7465 0.6924 35 1 1.8943 -10.1365 -0.2694 36 1 3.9472 -11.7075 -1.3331 37 1 2.9780 -10.5555 -2.3066 38 1 5.6982 -10.0947 -0.9581 39 1 5.2139 -9.7102 -2.6403 40 1 6.3078 -7.5739 -2.7525 41 1 8.1770 -6.0877 -2.0740 42 1 8.2927 -5.3180 0.2861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100787924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = -44.012595 kcal Electronic energy + Delta-G solvation = -27101.209431 eV Core-core repulsion = 23121.683682 eV Total energy + Delta-G solvation = -3979.525749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.09481 -42.14169 -40.52820 -39.40232 -35.75971 -34.61874 -34.11561 -33.38745 -31.98698 -30.09702 -29.92808 -27.72461 -26.09156 -24.75337 -24.28054 -22.34538 -21.73908 -21.24879 -19.88493 -19.30250 -18.37028 -17.88015 -17.63418 -17.10674 -17.09225 -16.93855 -16.90592 -16.67575 -16.11354 -15.69137 -15.63894 -14.94562 -14.80880 -14.65552 -14.48729 -14.32064 -14.07865 -13.81707 -13.47618 -13.21150 -13.19638 -13.07465 -12.90465 -12.86602 -12.66500 -12.33733 -12.13267 -11.77198 -11.55533 -11.19401 -11.17024 -11.02938 -10.85318 -10.66578 -10.35794 -10.13064 -9.28225 -8.72243 -8.37484 -6.17121 -0.14863 0.06646 1.21521 1.41055 1.42839 1.51873 1.55141 2.11068 2.24048 2.28989 2.45596 2.74313 2.96221 3.27026 3.43548 3.51829 3.68149 3.90354 3.91477 3.96864 4.05438 4.11528 4.17034 4.19227 4.29951 4.33548 4.47088 4.56157 4.66926 4.68672 4.75925 4.82381 4.96265 5.00005 5.09205 5.13267 5.19839 5.37604 5.38431 5.42704 5.51411 5.96445 6.16483 6.40411 6.54121 7.02846 7.14018 8.72046 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012668 B = 0.003260 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.735588 B = 8587.218879 C =10011.720400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.002 2.998 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.551 4.551 8 H 0.079 0.921 9 S -0.137 6.137 10 C -0.128 4.128 11 C 0.528 3.472 12 O -0.563 6.563 13 N -0.710 5.710 14 C 0.137 3.863 15 C 0.059 3.941 16 H 0.083 0.917 17 C -0.124 4.124 18 C -0.116 4.116 19 C 0.044 3.956 20 N -0.465 5.465 21 C 0.317 3.683 22 C -0.185 4.185 23 C -0.015 4.015 24 C -0.212 4.212 25 C 0.301 3.699 26 F -0.126 7.126 27 N -0.584 5.584 28 H 0.273 0.727 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.403 0.597 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.114 0.886 40 H 0.171 0.829 41 H 0.189 0.811 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.872 -23.531 -5.208 31.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.699 4.699 8 H 0.097 0.903 9 S 0.090 5.910 10 C -0.279 4.279 11 C 0.313 3.687 12 O -0.441 6.441 13 N -0.366 5.366 14 C 0.013 3.987 15 C -0.049 4.049 16 H 0.101 0.899 17 C -0.162 4.162 18 C -0.153 4.153 19 C -0.080 4.080 20 N -0.183 5.183 21 C 0.086 3.914 22 C -0.207 4.207 23 C -0.040 4.040 24 C -0.235 4.235 25 C 0.149 3.851 26 F -0.105 7.105 27 N -0.306 5.306 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.243 0.757 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.132 0.868 40 H 0.188 0.812 41 H 0.206 0.794 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.819 -23.813 -4.983 30.156 hybrid contribution 2.529 1.579 0.762 3.077 sum 20.348 -22.235 -4.221 30.434 Atomic orbital electron populations 1.70183 1.07966 1.28758 1.47678 1.26162 0.96036 1.03328 0.93496 0.84918 0.78111 0.75731 0.78983 1.18946 1.19988 1.18366 1.23190 0.95254 0.92032 1.59425 0.90271 1.85483 1.09715 0.98822 1.96991 1.23321 1.03848 0.95125 1.05599 1.20076 0.86369 0.86706 0.75512 1.90658 1.16882 1.86109 1.50483 1.46065 1.10257 1.05601 1.74713 1.21489 0.96070 0.79570 1.01579 1.22673 0.92731 0.95734 0.93810 0.89878 1.22464 1.02044 0.91809 0.99919 1.22542 0.95683 0.99714 0.97407 1.23502 0.97790 0.83935 1.02743 1.62047 1.12268 1.13778 1.30248 1.19979 0.90375 0.94504 0.86549 1.21972 0.95170 1.02153 1.01438 1.21878 0.96547 0.90815 0.94772 1.22082 1.01327 1.05517 0.94525 1.18292 0.92618 0.94012 0.80195 1.91618 1.95613 1.87536 1.35755 1.66593 1.26686 1.17387 1.19971 0.91825 0.88674 0.88188 0.75700 0.91742 0.91818 0.89318 0.89881 0.87836 0.89941 0.92037 0.86773 0.81179 0.79355 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.21 13.22 21.65 0.29 -56.92 16 2 C 0.01 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.73 29.55 68.60 2.03 46.76 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.55 -33.05 9.50 67.95 0.65 -32.40 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.14 -8.13 20.57 -56.49 -1.16 -9.29 16 10 C -0.13 -5.90 6.16 71.24 0.44 -5.46 16 11 C 0.53 23.24 7.85 87.66 0.69 23.93 16 12 O -0.56 -28.98 15.86 -3.03 -0.05 -29.03 16 13 N -0.71 -24.46 5.40 -463.07 -2.50 -26.96 16 14 C 0.14 3.90 5.15 86.38 0.44 4.35 16 15 C 0.06 1.20 2.59 45.06 0.12 1.31 16 16 H 0.08 1.95 6.50 -2.38 -0.02 1.94 16 17 C -0.12 -1.64 6.57 31.47 0.21 -1.43 16 18 C -0.12 -1.02 7.06 31.80 0.22 -0.79 16 19 C 0.04 0.46 6.05 86.65 0.52 0.98 16 20 N -0.46 -8.41 4.82 -665.77 -3.21 -11.62 16 21 C 0.32 6.14 5.01 133.04 0.67 6.81 16 22 C -0.19 -2.45 9.46 22.50 0.21 -2.23 16 23 C -0.01 -0.16 10.16 22.43 0.23 0.07 16 24 C -0.21 -3.19 10.08 22.43 0.23 -2.97 16 25 C 0.30 6.81 8.40 84.68 0.71 7.53 16 26 F -0.13 -3.28 17.29 44.97 0.78 -2.51 16 27 N -0.58 -13.93 6.22 -194.34 -1.21 -15.14 16 28 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 29 H 0.09 4.18 8.14 -2.40 -0.02 4.16 16 30 H 0.10 4.27 8.14 -2.39 -0.02 4.25 16 31 H 0.40 12.85 4.78 -92.70 -0.44 12.41 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 1.13 7.69 -2.39 -0.02 1.11 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.60 8.00 -2.39 -0.02 0.58 16 39 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.17 1.36 8.05 -2.91 -0.02 1.34 16 41 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 42 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -82.94 366.16 1.37 -81.58 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.61 Total: 22.13 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 5.80 Total: 1.01 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -6.63 Total: -110.64 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.51 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -82.94 1.37 -81.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.563 kcal (2) G-P(sol) polarization free energy of solvation -82.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds