Wall clock time and date at job start Tue Mar 31 2020 22:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47188 * 270.00356 * 3 2 1 5 5 H 1.48501 * 109.46972 * 29.99968 * 3 2 1 6 6 H 1.48502 * 109.47358 * 150.00119 * 3 2 1 7 7 C 1.38802 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00460 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99433 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99752 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47118 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99760 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99532 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99351 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46730 * 174.90317 * 14 13 11 16 16 H 1.08993 * 110.36935 * 56.91442 * 15 14 13 17 17 C 1.54380 * 110.40803 * 294.56333 * 15 14 13 18 18 C 1.54254 * 105.05838 * 217.36866 * 17 15 14 19 19 C 1.54378 * 105.06291 * 0.02562 * 18 17 15 20 20 N 1.48551 * 104.59627 * 23.84768 * 19 18 17 21 21 C 1.38991 * 111.00478 * 200.96231 * 20 19 18 22 22 C 1.39067 * 119.68841 * 283.31587 * 21 20 19 23 23 C 1.38377 * 119.15784 * 179.97438 * 22 21 20 24 24 C 1.38754 * 118.53468 * 359.97438 * 23 22 21 25 25 C 1.38375 * 119.30521 * 359.97438 * 24 23 22 26 26 F 1.35104 * 119.60269 * 179.97438 * 25 24 23 27 27 N 1.32137 * 120.79049 * 359.74727 * 25 24 23 28 28 H 0.96995 * 120.00107 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46919 * 60.00234 * 10 9 7 30 30 H 1.08996 * 109.46916 * 299.99803 * 10 9 7 31 31 H 0.96993 * 119.99997 * 359.97438 * 13 11 10 32 32 H 1.08993 * 109.47184 * 54.89905 * 14 13 11 33 33 H 1.09003 * 109.47013 * 294.89658 * 14 13 11 34 34 H 1.08994 * 110.32568 * 336.27167 * 17 15 14 35 35 H 1.09002 * 110.32239 * 98.47529 * 17 15 14 36 36 H 1.09010 * 110.32186 * 118.89967 * 18 17 15 37 37 H 1.08999 * 110.32680 * 241.00366 * 18 17 15 38 38 H 1.09001 * 110.41163 * 142.62935 * 19 18 17 39 39 H 1.09002 * 110.40604 * 265.07190 * 19 18 17 40 40 H 1.07999 * 120.42571 * 359.95128 * 22 21 20 41 41 H 1.08004 * 120.73716 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.34810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0019 15 6 3.4973 -8.6965 -0.1293 16 1 4.2148 -8.5394 0.6759 17 6 4.1856 -8.5391 -1.5022 18 6 4.5729 -9.9718 -1.9229 19 6 4.0853 -10.8743 -0.7693 20 7 2.9998 -10.0965 -0.1185 21 6 2.7815 -10.5373 1.1814 22 6 2.0827 -11.7197 1.3996 23 6 1.8720 -12.1486 2.6982 24 6 2.3695 -11.3782 3.7396 25 6 3.0571 -10.2126 3.4512 26 9 3.5436 -9.4576 4.4605 27 7 3.2474 -9.8313 2.2005 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8905 31 1 3.8009 -6.1834 -0.0004 32 1 1.6505 -7.8477 -0.8434 33 1 1.7968 -7.9041 0.9296 34 1 3.4942 -8.1060 -2.2249 35 1 5.0765 -7.9178 -1.4100 36 1 4.0714 -10.2420 -2.8524 37 1 5.6536 -10.0533 -2.0391 38 1 3.6973 -11.8149 -1.1603 39 1 4.8953 -11.0602 -0.0638 40 1 1.7088 -12.2958 0.5661 41 1 1.3323 -13.0627 2.8970 42 1 2.2223 -11.6857 4.7644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100787925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:42 Heat of formation + Delta-G solvation = -24.865714 kcal Electronic energy + Delta-G solvation = -26195.039649 eV Core-core repulsion = 22216.344171 eV Total energy + Delta-G solvation = -3978.695478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.29105 -41.24370 -39.28378 -38.48350 -34.56400 -33.44045 -32.58992 -32.39379 -30.72212 -29.34816 -28.65891 -25.55327 -25.08177 -24.04029 -23.63105 -21.62967 -20.59889 -20.24281 -18.53155 -17.92835 -17.46133 -16.61290 -16.52352 -16.32152 -16.25652 -16.01128 -15.21921 -15.12916 -14.77456 -14.55080 -14.35723 -13.96504 -13.80631 -13.60163 -13.40009 -13.17629 -12.92345 -12.75772 -12.52080 -12.50259 -12.17120 -11.77201 -11.75183 -11.13406 -11.03274 -10.98903 -10.89711 -10.73021 -10.51763 -10.23640 -9.85236 -9.77965 -9.34338 -9.03580 -8.80502 -8.74198 -8.18858 -6.45653 -6.18138 -3.88237 0.48566 0.69247 2.78358 3.08965 3.10916 3.18245 3.24838 3.28364 3.32544 3.48617 3.87250 4.07529 4.16393 4.23873 4.33199 4.47055 4.55365 4.61268 4.74366 4.80594 5.00511 5.07167 5.16854 5.22281 5.25920 5.28820 5.30188 5.37841 5.52024 5.62062 5.62965 5.68197 5.74946 5.83336 5.92323 5.96244 6.01766 6.19094 6.21373 6.62432 6.72383 7.24345 7.63041 7.78434 8.38824 8.69378 9.27050 10.89340 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002324 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.331385 B =12045.663393 C =12932.407870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.143 3.857 15 C 0.056 3.944 16 H 0.090 0.910 17 C -0.125 4.125 18 C -0.123 4.123 19 C 0.045 3.955 20 N -0.450 5.450 21 C 0.333 3.667 22 C -0.176 4.176 23 C -0.032 4.032 24 C -0.214 4.214 25 C 0.331 3.669 26 F -0.111 7.111 27 N -0.545 5.545 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.397 0.603 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.919 -29.458 1.267 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.389 5.389 14 C 0.018 3.982 15 C -0.052 4.052 16 H 0.108 0.892 17 C -0.164 4.164 18 C -0.161 4.161 19 C -0.081 4.081 20 N -0.170 5.170 21 C 0.102 3.898 22 C -0.199 4.199 23 C -0.058 4.058 24 C -0.236 4.236 25 C 0.176 3.824 26 F -0.090 7.090 27 N -0.264 5.264 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.230 0.770 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.717 -28.958 0.837 30.253 hybrid contribution 2.685 0.911 0.921 2.981 sum 11.403 -28.046 1.758 30.327 Atomic orbital electron populations 1.70020 1.05948 1.27409 1.46954 1.24995 0.95027 0.99018 0.94597 0.86168 0.79413 0.81593 0.78318 1.20283 1.20772 1.19709 1.22872 0.94911 0.91682 1.58809 0.90941 1.85405 1.05001 0.96275 1.96703 1.23522 1.06509 0.95343 1.04905 1.20275 0.86487 0.86183 0.75191 1.90702 1.15378 1.85581 1.47515 1.45847 1.09881 1.05271 1.77935 1.20956 0.94749 0.80043 1.02441 1.22866 0.96896 0.86746 0.98663 0.89194 1.22459 1.00898 0.96981 0.96018 1.22322 1.01286 0.94371 0.98123 1.23187 0.91254 0.97602 0.96031 1.62871 1.39271 1.04459 1.10390 1.19658 0.92008 0.89974 0.88119 1.21643 1.02178 0.97608 0.98422 1.21392 0.94587 0.98615 0.91233 1.21774 1.03593 0.95951 1.02237 1.17906 0.93363 0.88034 0.83058 1.91659 1.85618 1.75721 1.55988 1.66879 1.23789 1.36547 0.99185 0.92213 0.89245 0.89218 0.76971 0.90812 0.92161 0.89962 0.90504 0.90273 0.90610 0.88903 0.92733 0.83492 0.83318 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.60 13.22 55.49 0.73 -25.87 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.19 6.16 36.01 0.22 -2.96 16 11 C 0.53 10.54 7.85 -10.98 -0.09 10.46 16 12 O -0.52 -12.45 15.86 5.56 0.09 -12.36 16 13 N -0.73 -10.75 5.35 -60.29 -0.32 -11.07 16 14 C 0.14 1.97 5.20 -4.04 -0.02 1.95 16 15 C 0.06 0.58 1.98 -66.06 -0.13 0.45 16 16 H 0.09 1.01 6.93 -51.93 -0.36 0.65 16 17 C -0.13 -1.01 6.24 -25.35 -0.16 -1.17 16 18 C -0.12 -0.75 7.00 -25.35 -0.18 -0.93 16 19 C 0.04 0.30 6.31 -2.19 -0.01 0.28 16 20 N -0.45 -4.23 5.06 -161.38 -0.82 -5.04 16 21 C 0.33 3.33 5.65 -155.02 -0.88 2.46 16 22 C -0.18 -1.30 9.85 -39.22 -0.39 -1.69 16 23 C -0.03 -0.20 10.16 -39.34 -0.40 -0.60 16 24 C -0.21 -1.62 10.08 -39.34 -0.40 -2.01 16 25 C 0.33 3.60 8.41 -17.37 -0.15 3.45 16 26 F -0.11 -1.32 17.29 2.25 0.04 -1.29 16 27 N -0.54 -6.43 8.28 -12.78 -0.11 -6.53 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.40 4.60 8.37 -40.82 -0.34 4.26 16 32 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 33 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 34 H 0.08 0.75 7.81 -51.93 -0.41 0.34 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.37 7.97 -51.93 -0.41 -0.04 16 40 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -36.46 372.57 -10.08 -46.53 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.70 Total: 0.71 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.37 Total: -3.52 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.51 Total: -48.51 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.46 -10.08 -46.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.669 kcal (2) G-P(sol) polarization free energy of solvation -36.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds