Wall clock time and date at job start Tue Mar 31 2020 22:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00088 * 2 1 4 4 H 1.48501 * 109.47188 * 270.00356 * 3 2 1 5 5 H 1.48501 * 109.46972 * 29.99968 * 3 2 1 6 6 H 1.48502 * 109.47358 * 150.00119 * 3 2 1 7 7 C 1.38802 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00460 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99433 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99752 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47118 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99760 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99532 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99351 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46730 * 174.90317 * 14 13 11 16 16 H 1.08993 * 110.36935 * 56.91442 * 15 14 13 17 17 C 1.54380 * 110.40803 * 294.56333 * 15 14 13 18 18 C 1.54254 * 105.05838 * 217.36866 * 17 15 14 19 19 C 1.54378 * 105.06291 * 0.02562 * 18 17 15 20 20 N 1.48551 * 104.59627 * 23.84768 * 19 18 17 21 21 C 1.38991 * 111.00478 * 200.96231 * 20 19 18 22 22 C 1.39067 * 119.68841 * 283.31587 * 21 20 19 23 23 C 1.38377 * 119.15784 * 179.97438 * 22 21 20 24 24 C 1.38754 * 118.53468 * 359.97438 * 23 22 21 25 25 C 1.38375 * 119.30521 * 359.97438 * 24 23 22 26 26 F 1.35104 * 119.60269 * 179.97438 * 25 24 23 27 27 N 1.32137 * 120.79049 * 359.74727 * 25 24 23 28 28 H 0.96995 * 120.00107 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46919 * 60.00234 * 10 9 7 30 30 H 1.08996 * 109.46916 * 299.99803 * 10 9 7 31 31 H 0.96993 * 119.99997 * 359.97438 * 13 11 10 32 32 H 1.08993 * 109.47184 * 54.89905 * 14 13 11 33 33 H 1.09003 * 109.47013 * 294.89658 * 14 13 11 34 34 H 1.08994 * 110.32568 * 336.27167 * 17 15 14 35 35 H 1.09002 * 110.32239 * 98.47529 * 17 15 14 36 36 H 1.09010 * 110.32186 * 118.89967 * 18 17 15 37 37 H 1.08999 * 110.32680 * 241.00366 * 18 17 15 38 38 H 1.09001 * 110.41163 * 142.62935 * 19 18 17 39 39 H 1.09002 * 110.40604 * 265.07190 * 19 18 17 40 40 H 1.07999 * 120.42571 * 359.95128 * 22 21 20 41 41 H 1.08004 * 120.73716 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.34810 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3028 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3304 -7.7151 -0.0019 15 6 3.4973 -8.6965 -0.1293 16 1 4.2148 -8.5394 0.6759 17 6 4.1856 -8.5391 -1.5022 18 6 4.5729 -9.9718 -1.9229 19 6 4.0853 -10.8743 -0.7693 20 7 2.9998 -10.0965 -0.1185 21 6 2.7815 -10.5373 1.1814 22 6 2.0827 -11.7197 1.3996 23 6 1.8720 -12.1486 2.6982 24 6 2.3695 -11.3782 3.7396 25 6 3.0571 -10.2126 3.4512 26 9 3.5436 -9.4576 4.4605 27 7 3.2474 -9.8313 2.2005 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8905 31 1 3.8009 -6.1834 -0.0004 32 1 1.6505 -7.8477 -0.8434 33 1 1.7968 -7.9041 0.9296 34 1 3.4942 -8.1060 -2.2249 35 1 5.0765 -7.9178 -1.4100 36 1 4.0714 -10.2420 -2.8524 37 1 5.6536 -10.0533 -2.0391 38 1 3.6973 -11.8149 -1.1603 39 1 4.8953 -11.0602 -0.0638 40 1 1.7088 -12.2958 0.5661 41 1 1.3323 -13.0627 2.8970 42 1 2.2223 -11.6857 4.7644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100787925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:42 Heat of formation + Delta-G solvation = -50.673922 kcal Electronic energy + Delta-G solvation = -26196.158777 eV Core-core repulsion = 22216.344171 eV Total energy + Delta-G solvation = -3979.814606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.09158 -41.93292 -40.64801 -39.37181 -35.90947 -34.59373 -34.03568 -33.26846 -31.99981 -30.09530 -29.83508 -27.69674 -26.10762 -24.71897 -24.31715 -22.35878 -21.69780 -21.34138 -19.88267 -19.22295 -18.40218 -17.72345 -17.56757 -17.13559 -17.09297 -16.98136 -16.88749 -16.61338 -16.11556 -15.85100 -15.28503 -15.05486 -14.85593 -14.71542 -14.43366 -14.29446 -14.14442 -13.72724 -13.52187 -13.32454 -13.17815 -13.07331 -12.95778 -12.88479 -12.60513 -12.30828 -12.01052 -11.74497 -11.49363 -11.14948 -11.11306 -11.05714 -10.89190 -10.54796 -10.29562 -10.20444 -9.41475 -8.68557 -8.35352 -6.14006 -0.14894 0.10537 1.24083 1.42266 1.44815 1.55793 1.56347 2.03995 2.26450 2.36389 2.46861 2.85485 2.98666 3.30397 3.43314 3.49865 3.62502 3.93091 3.93640 4.00279 4.05639 4.12877 4.20829 4.26301 4.32288 4.37488 4.47649 4.57328 4.66812 4.70679 4.75636 4.86294 4.94179 4.99314 5.07698 5.14337 5.16376 5.30266 5.41074 5.42748 5.53227 5.99185 6.19236 6.43125 6.57214 7.05603 7.17878 8.74095 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002324 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.331385 B =12045.663393 C =12932.407870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.127 4.127 11 C 0.534 3.466 12 O -0.567 6.567 13 N -0.707 5.707 14 C 0.151 3.849 15 C 0.065 3.935 16 H 0.080 0.920 17 C -0.125 4.125 18 C -0.116 4.116 19 C 0.045 3.955 20 N -0.457 5.457 21 C 0.308 3.692 22 C -0.171 4.171 23 C -0.022 4.022 24 C -0.205 4.205 25 C 0.292 3.708 26 F -0.129 7.129 27 N -0.577 5.577 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.052 0.948 40 H 0.171 0.829 41 H 0.191 0.809 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.990 -31.190 0.682 33.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.278 4.278 11 C 0.320 3.680 12 O -0.445 6.445 13 N -0.362 5.362 14 C 0.026 3.974 15 C -0.043 4.043 16 H 0.098 0.902 17 C -0.163 4.163 18 C -0.154 4.154 19 C -0.080 4.080 20 N -0.177 5.177 21 C 0.078 3.922 22 C -0.193 4.193 23 C -0.048 4.048 24 C -0.227 4.227 25 C 0.139 3.861 26 F -0.108 7.108 27 N -0.297 5.297 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.252 0.748 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.189 0.811 41 H 0.209 0.791 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 10.849 -30.734 0.251 32.593 hybrid contribution 2.037 1.275 1.116 2.649 sum 12.886 -29.459 1.366 32.183 Atomic orbital electron populations 1.70187 1.08015 1.28645 1.47996 1.26162 0.95996 1.03399 0.93708 0.84925 0.78135 0.75859 0.78870 1.19123 1.20289 1.18237 1.23200 0.95361 0.91878 1.58912 0.89847 1.85605 1.10532 0.99285 1.97058 1.23350 1.03608 0.93952 1.06916 1.20119 0.86149 0.86704 0.75004 1.90688 1.17490 1.86130 1.50201 1.45561 1.10293 1.04770 1.75546 1.20914 0.96102 0.79998 1.00386 1.22673 0.94954 0.86891 0.99797 0.90161 1.22470 1.00855 0.98826 0.94132 1.22333 1.02478 0.92505 0.98114 1.23316 0.90587 0.98226 0.95847 1.62947 1.40277 1.03940 1.10517 1.20014 0.93150 0.91136 0.87886 1.22004 1.00778 0.96584 0.99960 1.21899 0.93461 0.99356 0.90052 1.22110 1.01989 0.94523 1.04054 1.18348 0.95489 0.89507 0.82761 1.91602 1.86184 1.76444 1.56585 1.66730 1.25087 1.37869 0.99989 0.91965 0.87408 0.86720 0.74795 0.92016 0.94933 0.91024 0.89214 0.89453 0.88880 0.86747 0.92970 0.81122 0.79144 0.81110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.07 13.22 21.65 0.29 -56.78 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.55 -31.84 9.50 67.95 0.65 -31.19 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.13 -5.29 6.16 71.24 0.44 -4.86 16 11 C 0.53 21.45 7.85 87.66 0.69 22.14 16 12 O -0.57 -28.38 15.86 -3.02 -0.05 -28.43 16 13 N -0.71 -20.64 5.35 -463.04 -2.48 -23.12 16 14 C 0.15 4.26 5.20 86.38 0.45 4.71 16 15 C 0.07 1.32 1.98 45.06 0.09 1.41 16 16 H 0.08 1.81 6.93 -2.39 -0.02 1.79 16 17 C -0.12 -1.83 6.24 31.49 0.20 -1.63 16 18 C -0.12 -1.13 7.00 31.49 0.22 -0.91 16 19 C 0.04 0.50 6.31 86.45 0.55 1.04 16 20 N -0.46 -8.16 5.06 -664.47 -3.36 -11.52 16 21 C 0.31 5.97 5.65 133.04 0.75 6.72 16 22 C -0.17 -2.15 9.85 22.50 0.22 -1.93 16 23 C -0.02 -0.20 10.16 22.43 0.23 0.02 16 24 C -0.21 -2.82 10.08 22.43 0.23 -2.59 16 25 C 0.29 6.49 8.41 84.68 0.71 7.20 16 26 F -0.13 -3.26 17.29 44.97 0.78 -2.48 16 27 N -0.58 -13.92 8.28 -194.34 -1.61 -15.53 16 28 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.11 4.10 8.14 -2.40 -0.02 4.09 16 30 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 31 H 0.42 9.13 8.37 -92.71 -0.78 8.36 16 32 H 0.06 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.03 1.11 7.90 -2.39 -0.02 1.09 16 34 H 0.07 1.22 7.81 -2.39 -0.02 1.20 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 0.62 7.97 -2.39 -0.02 0.60 16 40 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 42 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -84.03 372.57 0.58 -83.45 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.27 Total: 16.61 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.88 Total: 1.31 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -7.16 Total: -106.95 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.43 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -84.03 0.58 -83.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.779 kcal (2) G-P(sol) polarization free energy of solvation -84.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds