Wall clock time and date at job start Tue Mar 31 2020 22:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00097 * 3 2 1 5 5 H 1.48500 * 109.47129 * 30.00403 * 3 2 1 6 6 H 1.48499 * 109.47074 * 150.00029 * 3 2 1 7 7 C 1.38795 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00104 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00158 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47072 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99958 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46824 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.62904 * 303.34990 * 15 14 13 17 17 C 1.55147 * 110.70374 * 66.45301 * 15 14 13 18 18 C 1.54908 * 101.65049 * 154.03418 * 17 15 14 19 19 N 1.47845 * 104.79717 * 322.93105 * 18 17 15 20 20 C 1.39004 * 110.99763 * 146.36162 * 19 18 17 21 21 C 1.39061 * 119.68844 * 59.16087 * 20 19 18 22 22 C 1.38380 * 119.15759 * 179.97438 * 21 20 19 23 23 C 1.38762 * 118.53074 * 0.02562 * 22 21 20 24 24 C 1.38365 * 119.30773 * 359.97438 * 23 22 21 25 25 F 1.35096 * 119.60245 * 180.02562 * 24 23 22 26 26 N 1.32141 * 120.79198 * 359.74202 * 24 23 22 27 27 C 1.47439 * 108.56650 * 24.09802 * 19 18 17 28 28 H 0.96999 * 120.00743 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46972 * 60.00333 * 10 9 7 30 30 H 1.08995 * 109.46796 * 300.00071 * 10 9 7 31 31 H 0.97006 * 119.99351 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47420 * 60.01107 * 14 13 11 33 33 H 1.08995 * 109.47460 * 300.00098 * 14 13 11 34 34 H 1.08996 * 110.99290 * 272.12847 * 17 15 14 35 35 H 1.09002 * 110.98631 * 35.95091 * 17 15 14 36 36 H 1.09005 * 110.37447 * 81.76012 * 18 17 15 37 37 H 1.08998 * 110.37529 * 204.10029 * 18 17 15 38 38 H 1.08003 * 120.42705 * 359.95252 * 21 20 19 39 39 H 1.07995 * 120.73320 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.34335 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.88723 * 239.60536 * 27 19 18 42 42 H 1.08997 * 110.02921 * 118.49255 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2324 -0.0021 12 8 6.3440 -2.2961 -0.0025 13 7 6.0458 -4.4946 -0.0016 14 6 7.4908 -4.7355 -0.0021 15 6 7.7565 -6.2423 -0.0020 16 1 7.2713 -6.7178 0.8503 17 6 7.2802 -6.8834 -1.3322 18 6 8.1953 -8.1299 -1.4239 19 7 9.5002 -7.6803 -0.8939 20 6 10.1469 -8.7112 -0.2221 21 6 10.4511 -9.8886 -0.8967 22 6 11.0956 -10.9075 -0.2175 23 6 11.4150 -10.7147 1.1190 24 6 11.0829 -9.5180 1.7289 25 9 11.3915 -9.3236 3.0297 26 7 10.4724 -8.5607 1.0528 27 6 9.2728 -6.5290 -0.0013 28 1 -0.4851 0.8400 0.0004 29 1 3.6434 -3.4317 -0.8907 30 1 3.6440 -3.4313 0.8893 31 1 5.4291 -5.2434 -0.0009 32 1 7.9341 -4.2881 0.8874 33 1 7.9333 -4.2890 -0.8925 34 1 6.2311 -7.1727 -1.2725 35 1 7.4512 -6.2109 -2.1728 36 1 7.7961 -8.9396 -0.8129 37 1 8.2970 -8.4506 -2.4607 38 1 10.1876 -10.0065 -1.9374 39 1 11.3436 -11.8327 -0.7163 40 1 11.9184 -11.4903 1.6771 41 1 9.8147 -5.6592 -0.3727 42 1 9.6043 -6.7687 1.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100959877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:51 Heat of formation + Delta-G solvation = -26.059716 kcal Electronic energy + Delta-G solvation = -25454.403256 eV Core-core repulsion = 21475.656002 eV Total energy + Delta-G solvation = -3978.747254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.45035 -41.34625 -39.52345 -38.62661 -35.20630 -33.33556 -32.63139 -32.43776 -30.43494 -29.59433 -28.96109 -25.73635 -25.39155 -24.01406 -23.58971 -21.79172 -20.83837 -20.32678 -18.72755 -17.90869 -17.74410 -16.68011 -16.65817 -16.56597 -16.41051 -16.10159 -15.42794 -15.14975 -14.92398 -14.71479 -14.37758 -14.16039 -13.87426 -13.75735 -13.57077 -13.24718 -13.11347 -12.80959 -12.79149 -12.73493 -12.33876 -11.95673 -11.66815 -11.28740 -11.26176 -11.11422 -11.00541 -10.70457 -10.60271 -10.23296 -9.99665 -9.85700 -9.53486 -9.02467 -8.96683 -8.67672 -8.50054 -6.91886 -6.29046 -4.00797 0.40167 0.58129 2.70325 2.75994 2.97689 3.01797 3.27017 3.33559 3.40418 3.51059 3.64142 3.92879 4.09977 4.19438 4.33291 4.33429 4.43951 4.51227 4.64942 4.72221 4.75715 4.91954 4.96895 5.10074 5.13672 5.18497 5.25066 5.29881 5.39599 5.42457 5.52278 5.54839 5.59961 5.73800 5.77957 5.87004 6.00116 6.00582 6.05564 6.49852 6.55427 7.15381 7.59303 7.93930 8.41240 8.48684 9.17194 10.80135 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031092 B = 0.001738 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.343294 B =16111.118878 C =16419.764556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.519 6.519 13 N -0.736 5.736 14 C 0.134 3.866 15 C -0.119 4.119 16 H 0.086 0.914 17 C -0.127 4.127 18 C 0.050 3.950 19 N -0.467 5.467 20 C 0.347 3.653 21 C -0.195 4.195 22 C -0.025 4.025 23 C -0.225 4.225 24 C 0.336 3.664 25 F -0.112 7.112 26 N -0.552 5.552 27 C 0.036 3.964 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.398 0.602 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.089 0.911 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.012 -26.846 -1.978 34.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.010 3.990 15 C -0.139 4.139 16 H 0.104 0.896 17 C -0.165 4.165 18 C -0.075 4.075 19 N -0.183 5.183 20 C 0.115 3.885 21 C -0.218 4.218 22 C -0.051 4.051 23 C -0.248 4.248 24 C 0.182 3.818 25 F -0.091 7.091 26 N -0.272 5.272 27 C -0.091 4.091 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.108 0.892 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.240 -24.198 -1.950 33.607 hybrid contribution -1.180 -1.572 0.450 2.016 sum 22.060 -25.770 -1.500 33.955 Atomic orbital electron populations 1.69933 1.05913 1.27773 1.48072 1.24712 0.94455 0.98977 0.93173 0.86732 0.81908 0.83263 0.79939 1.19201 1.19942 1.15915 1.22316 0.88291 0.97530 1.58790 0.89399 1.84804 1.09248 1.00073 1.97423 1.23276 0.94035 1.04391 1.05765 1.20275 0.90578 0.82271 0.75269 1.90707 1.58788 1.42199 1.47639 1.45929 1.07344 1.08025 1.77773 1.21205 0.81708 0.93333 1.02781 1.22617 0.96437 0.96133 0.98684 0.89567 1.22881 0.99381 0.96218 0.97983 1.23183 0.85342 0.97845 1.01160 1.60809 1.21113 1.04733 1.31671 1.19596 0.93311 0.89932 0.85638 1.21610 1.04650 0.93473 1.02082 1.21366 0.92348 0.98658 0.92736 1.21709 1.07737 0.98265 0.97061 1.17888 0.94045 0.90259 0.79648 1.91648 1.89829 1.95485 1.32092 1.66674 1.18213 1.33415 1.08917 1.22989 0.94889 0.92397 0.98855 0.91943 0.88523 0.88494 0.76781 0.91241 0.91096 0.89714 0.89459 0.92214 0.88802 0.83670 0.83407 0.83512 0.89245 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.83 27.74 -169.99 -4.71 17.12 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.37 6.16 36.00 0.22 -2.14 16 11 C 0.53 9.26 7.85 -10.98 -0.09 9.17 16 12 O -0.52 -11.18 15.86 5.56 0.09 -11.09 16 13 N -0.74 -8.91 5.40 -60.29 -0.33 -9.23 16 14 C 0.13 1.43 4.97 -4.04 -0.02 1.41 16 15 C -0.12 -0.93 3.01 -88.79 -0.27 -1.20 16 16 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.13 -0.81 6.22 -24.59 -0.15 -0.96 16 18 C 0.05 0.29 6.08 -2.30 -0.01 0.28 16 19 N -0.47 -3.76 5.20 -170.01 -0.88 -4.64 16 20 C 0.35 2.93 6.15 -155.01 -0.95 1.97 16 21 C -0.20 -1.14 9.37 -39.22 -0.37 -1.51 16 22 C -0.03 -0.11 10.16 -39.34 -0.40 -0.51 16 23 C -0.23 -1.32 10.08 -39.34 -0.40 -1.72 16 24 C 0.34 2.99 8.40 -17.37 -0.15 2.84 16 25 F -0.11 -1.08 17.29 2.25 0.04 -1.04 16 26 N -0.55 -5.54 7.96 -12.78 -0.10 -5.64 16 27 C 0.04 0.31 6.35 -2.84 -0.02 0.29 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.40 3.67 8.33 -40.82 -0.34 3.33 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.62 8.02 -51.93 -0.42 0.20 16 36 H 0.06 0.34 7.78 -51.93 -0.40 -0.06 16 37 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.15 0.57 7.97 -52.48 -0.42 0.15 16 39 H 0.15 0.20 8.06 -52.49 -0.42 -0.23 16 40 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.09 0.80 7.82 -51.93 -0.41 0.39 16 42 H 0.11 1.06 5.92 -51.93 -0.31 0.76 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -35.32 368.51 -9.62 -44.94 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.67 Total: -0.53 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -2.39 Total: -4.09 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.54 Total: -45.28 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.32 -9.62 -44.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.883 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds