Wall clock time and date at job start Tue Mar 31 2020 22:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99829 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00097 * 3 2 1 5 5 H 1.48500 * 109.47129 * 30.00403 * 3 2 1 6 6 H 1.48499 * 109.47074 * 150.00029 * 3 2 1 7 7 C 1.38795 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00040 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00104 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00158 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47072 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00096 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99958 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46824 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.62904 * 303.34990 * 15 14 13 17 17 C 1.55147 * 110.70374 * 66.45301 * 15 14 13 18 18 C 1.54908 * 101.65049 * 154.03418 * 17 15 14 19 19 N 1.47845 * 104.79717 * 322.93105 * 18 17 15 20 20 C 1.39004 * 110.99763 * 146.36162 * 19 18 17 21 21 C 1.39061 * 119.68844 * 59.16087 * 20 19 18 22 22 C 1.38380 * 119.15759 * 179.97438 * 21 20 19 23 23 C 1.38762 * 118.53074 * 0.02562 * 22 21 20 24 24 C 1.38365 * 119.30773 * 359.97438 * 23 22 21 25 25 F 1.35096 * 119.60245 * 180.02562 * 24 23 22 26 26 N 1.32141 * 120.79198 * 359.74202 * 24 23 22 27 27 C 1.47439 * 108.56650 * 24.09802 * 19 18 17 28 28 H 0.96999 * 120.00743 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46972 * 60.00333 * 10 9 7 30 30 H 1.08995 * 109.46796 * 300.00071 * 10 9 7 31 31 H 0.97006 * 119.99351 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47420 * 60.01107 * 14 13 11 33 33 H 1.08995 * 109.47460 * 300.00098 * 14 13 11 34 34 H 1.08996 * 110.99290 * 272.12847 * 17 15 14 35 35 H 1.09002 * 110.98631 * 35.95091 * 17 15 14 36 36 H 1.09005 * 110.37447 * 81.76012 * 18 17 15 37 37 H 1.08998 * 110.37529 * 204.10029 * 18 17 15 38 38 H 1.08003 * 120.42705 * 359.95252 * 21 20 19 39 39 H 1.07995 * 120.73320 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.34335 * 180.02562 * 23 22 21 41 41 H 1.09003 * 109.88723 * 239.60536 * 27 19 18 42 42 H 1.08997 * 110.02921 * 118.49255 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5730 -3.2324 -0.0021 12 8 6.3440 -2.2961 -0.0025 13 7 6.0458 -4.4946 -0.0016 14 6 7.4908 -4.7355 -0.0021 15 6 7.7565 -6.2423 -0.0020 16 1 7.2713 -6.7178 0.8503 17 6 7.2802 -6.8834 -1.3322 18 6 8.1953 -8.1299 -1.4239 19 7 9.5002 -7.6803 -0.8939 20 6 10.1469 -8.7112 -0.2221 21 6 10.4511 -9.8886 -0.8967 22 6 11.0956 -10.9075 -0.2175 23 6 11.4150 -10.7147 1.1190 24 6 11.0829 -9.5180 1.7289 25 9 11.3915 -9.3236 3.0297 26 7 10.4724 -8.5607 1.0528 27 6 9.2728 -6.5290 -0.0013 28 1 -0.4851 0.8400 0.0004 29 1 3.6434 -3.4317 -0.8907 30 1 3.6440 -3.4313 0.8893 31 1 5.4291 -5.2434 -0.0009 32 1 7.9341 -4.2881 0.8874 33 1 7.9333 -4.2890 -0.8925 34 1 6.2311 -7.1727 -1.2725 35 1 7.4512 -6.2109 -2.1728 36 1 7.7961 -8.9396 -0.8129 37 1 8.2970 -8.4506 -2.4607 38 1 10.1876 -10.0065 -1.9374 39 1 11.3436 -11.8327 -0.7163 40 1 11.9184 -11.4903 1.6771 41 1 9.8147 -5.6592 -0.3727 42 1 9.6043 -6.7687 1.0090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100959877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:50 Heat of formation + Delta-G solvation = -50.656166 kcal Electronic energy + Delta-G solvation = -25455.469838 eV Core-core repulsion = 21475.656002 eV Total energy + Delta-G solvation = -3979.813836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.08003 -41.89155 -40.70503 -39.39052 -36.22172 -34.67224 -33.90815 -33.40654 -31.44425 -30.23155 -29.90418 -27.86925 -26.33722 -24.53434 -24.17133 -22.40013 -21.72890 -21.40342 -19.86645 -19.28357 -18.35321 -17.86846 -17.55229 -17.17822 -17.10431 -17.06437 -16.91644 -16.62419 -15.98218 -15.64299 -15.38682 -15.04308 -14.92333 -14.84868 -14.63647 -14.34205 -14.13884 -13.80428 -13.62973 -13.34721 -13.23584 -13.16249 -13.00603 -12.91605 -12.68580 -12.27102 -11.97333 -11.86320 -11.73258 -11.17055 -11.16819 -11.02725 -10.75788 -10.55575 -10.53072 -10.15692 -9.20505 -8.99550 -8.51468 -6.22172 -0.09698 0.13828 0.99091 1.31343 1.46982 1.55781 1.56430 2.18413 2.22499 2.26037 2.51836 2.71623 2.84562 2.86809 3.40304 3.47925 3.68279 3.74240 3.89814 3.97067 4.10970 4.21081 4.22016 4.25105 4.29545 4.32094 4.47442 4.62330 4.68600 4.71871 4.78914 4.88323 4.90705 4.98438 5.03992 5.11790 5.22618 5.37592 5.47793 5.51004 5.70877 6.01003 6.11580 6.45755 6.63013 6.93898 7.18841 8.60772 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.031092 B = 0.001738 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.343294 B =16111.118878 C =16419.764556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.708 5.708 14 C 0.137 3.863 15 C -0.106 4.106 16 H 0.091 0.909 17 C -0.123 4.123 18 C 0.052 3.948 19 N -0.473 5.473 20 C 0.323 3.677 21 C -0.189 4.189 22 C -0.016 4.016 23 C -0.215 4.215 24 C 0.301 3.699 25 F -0.127 7.127 26 N -0.584 5.584 27 C 0.038 3.962 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.417 0.583 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.169 0.831 39 H 0.189 0.811 40 H 0.170 0.830 41 H 0.080 0.920 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.041 -29.318 -3.192 37.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.126 4.126 16 H 0.109 0.891 17 C -0.161 4.161 18 C -0.073 4.073 19 N -0.190 5.190 20 C 0.092 3.908 21 C -0.211 4.211 22 C -0.042 4.042 23 C -0.237 4.237 24 C 0.148 3.852 25 F -0.107 7.107 26 N -0.305 5.305 27 C -0.089 4.089 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.254 0.746 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.186 0.814 39 H 0.206 0.794 40 H 0.188 0.812 41 H 0.098 0.902 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 24.262 -26.737 -3.161 36.242 hybrid contribution -1.434 -1.017 0.810 1.936 sum 22.828 -27.754 -2.351 36.013 Atomic orbital electron populations 1.70008 1.07249 1.29001 1.49150 1.25550 0.95273 1.02216 0.92935 0.85875 0.80645 0.79686 0.80220 1.18653 1.18375 1.16206 1.22458 0.90202 0.96718 1.58205 0.91824 1.84756 1.06487 1.06380 1.97593 1.23266 0.95786 0.99510 1.07575 1.19971 0.89424 0.83343 0.75255 1.90698 1.59395 1.43929 1.50277 1.45663 1.08505 1.06773 1.75300 1.21253 0.80182 0.95332 1.01929 1.22467 0.96117 0.93922 1.00066 0.89117 1.22897 1.00509 0.96233 0.96458 1.23276 0.84254 0.97537 1.02220 1.60914 1.22126 1.04605 1.31322 1.19903 0.94291 0.91083 0.85537 1.21948 1.03627 0.92534 1.03034 1.21856 0.90723 0.99626 0.91969 1.22044 1.06536 0.97345 0.97820 1.18293 0.95901 0.91562 0.79490 1.91600 1.90201 1.95701 1.33153 1.66545 1.19236 1.34633 1.10107 1.22834 0.95150 0.92718 0.98229 0.91379 0.86554 0.86833 0.74615 0.92516 0.91671 0.87991 0.89934 0.91771 0.86853 0.81364 0.79400 0.81222 0.90196 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.69 13.97 21.65 0.30 -55.38 16 2 C 0.05 2.68 5.50 84.86 0.47 3.15 16 3 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 4 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 7 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 11 C 0.53 18.05 7.85 87.66 0.69 18.73 16 12 O -0.56 -24.22 15.86 -3.04 -0.05 -24.27 16 13 N -0.71 -15.87 5.40 -463.06 -2.50 -18.38 16 14 C 0.14 2.81 4.97 86.38 0.43 3.23 16 15 C -0.11 -1.53 3.01 -9.61 -0.03 -1.56 16 16 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.12 -1.27 6.22 31.98 0.20 -1.07 16 18 C 0.05 0.48 6.08 86.77 0.53 1.01 16 19 N -0.47 -7.04 5.20 -691.78 -3.60 -10.64 16 20 C 0.32 5.09 6.15 133.03 0.82 5.91 16 21 C -0.19 -1.68 9.37 22.50 0.21 -1.47 16 22 C -0.02 -0.09 10.16 22.43 0.23 0.14 16 23 C -0.22 -2.10 10.08 22.43 0.23 -1.87 16 24 C 0.30 5.34 8.40 84.68 0.71 6.05 16 25 F -0.13 -2.59 17.29 44.97 0.78 -1.81 16 26 N -0.58 -11.84 7.96 -194.34 -1.55 -13.38 16 27 C 0.04 0.67 6.35 86.65 0.55 1.22 16 28 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.12 3.86 8.14 -2.40 -0.02 3.84 16 30 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 31 H 0.42 6.47 8.33 -92.70 -0.77 5.70 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.98 8.02 -2.39 -0.02 0.96 16 36 H 0.06 0.56 7.78 -2.38 -0.02 0.54 16 37 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.17 0.65 7.97 -2.91 -0.02 0.63 16 39 H 0.19 -0.47 8.06 -2.91 -0.02 -0.50 16 40 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.08 1.49 7.82 -2.39 -0.02 1.47 16 42 H 0.09 1.87 5.92 -2.39 -0.01 1.85 16 Total: -1.00 -78.99 368.51 0.63 -78.36 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.24 Total: 8.67 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.15 Total: -0.15 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -7.34 Total: -97.78 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -78.99 0.63 -78.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.703 kcal (2) G-P(sol) polarization free energy of solvation -78.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds