Wall clock time and date at job start Tue Mar 31 2020 22:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48495 * 109.46899 * 269.99766 * 3 2 1 5 5 H 1.48497 * 109.47255 * 30.00013 * 3 2 1 6 6 H 1.48504 * 109.46646 * 150.00128 * 3 2 1 7 7 C 1.38798 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99902 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47090 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00057 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99956 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99987 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47423 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.87650 * 57.38319 * 15 14 13 17 17 C 1.55143 * 110.98981 * 293.54660 * 15 14 13 18 18 C 1.54313 * 103.01680 * 206.21553 * 17 15 14 19 19 N 1.47437 * 107.23854 * 22.28401 * 18 17 15 20 20 C 1.38998 * 111.00330 * 123.25565 * 19 18 17 21 21 C 1.39070 * 119.68786 * 59.85399 * 20 19 18 22 22 C 1.38372 * 119.15468 * 179.97438 * 21 20 19 23 23 C 1.38761 * 118.53741 * 359.75037 * 22 21 20 24 24 C 1.38376 * 119.29984 * 0.51465 * 23 22 21 25 25 F 1.35104 * 119.60027 * 179.74743 * 24 23 22 26 26 N 1.32130 * 120.79381 * 359.47611 * 24 23 22 27 27 C 1.47849 * 108.56310 * 0.98708 * 19 18 17 28 28 H 0.97001 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47269 * 60.00310 * 10 9 7 30 30 H 1.08994 * 109.47243 * 299.99651 * 10 9 7 31 31 H 0.97002 * 119.99877 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47337 * 59.99443 * 14 13 11 33 33 H 1.09001 * 109.46811 * 299.99157 * 14 13 11 34 34 H 1.09000 * 110.70509 * 87.83005 * 17 15 14 35 35 H 1.08999 * 110.70231 * 324.59826 * 17 15 14 36 36 H 1.09000 * 109.88910 * 262.86815 * 18 17 15 37 37 H 1.09006 * 110.02486 * 141.76481 * 18 17 15 38 38 H 1.08004 * 120.41955 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.73173 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.34806 * 180.23952 * 23 22 21 41 41 H 1.08997 * 110.37081 * 94.73975 * 27 19 18 42 42 H 1.09004 * 110.37184 * 217.07394 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 -0.0009 15 6 3.5026 -8.6985 -0.0007 16 1 4.1525 -8.5282 0.8576 17 6 4.3011 -8.6116 -1.3281 18 6 4.9291 -10.0160 -1.4484 19 7 4.1121 -10.9315 -0.6311 20 6 3.6333 -11.9891 -1.3955 21 6 4.5302 -12.8416 -2.0303 22 6 4.0415 -13.8911 -2.7881 23 6 2.6671 -14.0572 -2.8822 24 6 1.8313 -13.1686 -2.2291 25 9 0.4921 -13.3215 -2.3208 26 7 2.3273 -12.1754 -1.5125 27 6 2.9992 -10.1630 -0.0338 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 3.8010 -6.1834 0.0006 32 1 1.7228 -7.8746 -0.8915 33 1 1.7211 -7.8755 0.8885 34 1 5.0756 -7.8474 -1.2626 35 1 3.6337 -8.4146 -2.1670 36 1 5.9526 -9.9979 -1.0740 37 1 4.9209 -10.3406 -2.4890 38 1 5.5946 -12.6864 -1.9329 39 1 4.7150 -14.5688 -3.2916 40 1 2.2540 -14.8688 -3.4627 41 1 2.1065 -10.2436 -0.6541 42 1 2.7933 -10.5165 0.9766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100959878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:54 Heat of formation + Delta-G solvation = -27.811571 kcal Electronic energy + Delta-G solvation = -25477.324102 eV Core-core repulsion = 21498.500882 eV Total energy + Delta-G solvation = -3978.823220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.38089 -41.29946 -39.42722 -38.55557 -35.12601 -33.27198 -32.57088 -32.42281 -30.33740 -29.58049 -28.84688 -25.68391 -25.26404 -24.02673 -23.56061 -21.68784 -20.74778 -20.22719 -18.46412 -17.82216 -17.73853 -16.98001 -16.60423 -16.35858 -16.34589 -16.00829 -15.43064 -15.21383 -14.80273 -14.52019 -14.19987 -13.99145 -13.90066 -13.75989 -13.57406 -13.26574 -13.09508 -12.79552 -12.63727 -12.51339 -12.27291 -11.83213 -11.59965 -11.25019 -11.08720 -11.05886 -11.02328 -10.76061 -10.62842 -10.20966 -9.97323 -9.81435 -9.40440 -9.06955 -8.88903 -8.66758 -8.23041 -6.49705 -6.21381 -3.91990 0.44166 0.63078 2.74267 3.01609 3.08088 3.10921 3.22300 3.27263 3.30934 3.42511 3.69549 3.97126 4.16355 4.20556 4.22469 4.39279 4.44344 4.54161 4.69074 4.82063 4.95815 4.97425 5.13645 5.17766 5.18586 5.23604 5.27101 5.38932 5.49661 5.51598 5.56208 5.59511 5.68724 5.80521 5.89619 5.93477 5.99609 6.06079 6.13626 6.56577 6.62423 7.20919 7.59600 7.70411 8.35316 8.62052 9.23793 10.86005 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.001761 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.293201 B =15894.438617 C =16491.498659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.517 6.517 13 N -0.738 5.738 14 C 0.133 3.867 15 C -0.110 4.110 16 H 0.094 0.906 17 C -0.138 4.138 18 C 0.048 3.952 19 N -0.468 5.468 20 C 0.346 3.654 21 C -0.195 4.195 22 C -0.027 4.027 23 C -0.224 4.224 24 C 0.336 3.664 25 F -0.111 7.111 26 N -0.550 5.550 27 C 0.049 3.951 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.397 0.603 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.209 -29.361 -5.205 33.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.391 6.391 13 N -0.393 5.393 14 C 0.008 3.992 15 C -0.129 4.129 16 H 0.113 0.887 17 C -0.176 4.176 18 C -0.077 4.077 19 N -0.185 5.185 20 C 0.114 3.886 21 C -0.218 4.218 22 C -0.053 4.053 23 C -0.247 4.247 24 C 0.182 3.818 25 F -0.090 7.090 26 N -0.270 5.270 27 C -0.078 4.078 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.108 0.892 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.738 -29.201 -4.367 31.773 hybrid contribution 2.241 0.951 -0.854 2.580 sum 13.979 -28.250 -5.222 31.949 Atomic orbital electron populations 1.70023 1.05947 1.27450 1.46836 1.25000 0.95034 0.99037 0.94558 0.86165 0.79403 0.81577 0.78329 1.20289 1.20744 1.19703 1.22865 0.94901 0.91668 1.58954 0.90931 1.85421 1.04935 0.96317 1.96710 1.23527 1.06557 0.95404 1.04880 1.20311 0.86529 0.86276 0.75190 1.90710 1.15389 1.85591 1.47367 1.45954 1.09882 1.05361 1.78070 1.21141 0.94870 0.80380 1.02760 1.22586 0.97268 0.94375 0.98697 0.88749 1.22904 1.00252 0.96444 0.98036 1.22992 0.97856 0.90625 0.96215 1.60853 1.20603 1.09523 1.27498 1.19619 0.86223 0.93898 0.88888 1.21611 1.01215 0.97230 1.01764 1.21353 0.94351 0.95416 0.94137 1.21718 0.94252 1.02770 1.05922 1.17886 0.78729 0.91501 0.93709 1.91656 1.29199 1.94252 1.93884 1.66752 1.15986 1.22383 1.21886 1.23078 0.93192 0.90172 1.01328 0.92181 0.89219 0.89280 0.76901 0.91454 0.91138 0.89578 0.90454 0.88951 0.91453 0.83697 0.83434 0.83505 0.89202 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.86 7.85 -10.98 -0.09 9.77 16 12 O -0.52 -11.87 15.86 5.56 0.09 -11.78 16 13 N -0.74 -9.49 5.41 -60.30 -0.33 -9.82 16 14 C 0.13 1.52 5.12 -4.04 -0.02 1.50 16 15 C -0.11 -0.89 3.10 -88.48 -0.27 -1.16 16 16 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.14 -0.95 6.12 -24.91 -0.15 -1.11 16 18 C 0.05 0.30 6.44 -2.84 -0.02 0.28 16 19 N -0.47 -3.86 5.20 -170.01 -0.88 -4.75 16 20 C 0.35 3.08 6.15 -155.01 -0.95 2.13 16 21 C -0.20 -1.22 9.04 -39.22 -0.35 -1.57 16 22 C -0.03 -0.13 10.16 -39.34 -0.40 -0.53 16 23 C -0.22 -1.45 10.08 -39.34 -0.40 -1.84 16 24 C 0.34 3.25 8.41 -17.37 -0.15 3.10 16 25 F -0.11 -1.17 17.29 2.25 0.04 -1.14 16 26 N -0.55 -5.94 8.18 -12.78 -0.10 -6.05 16 27 C 0.05 0.44 5.84 -2.30 -0.01 0.43 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.40 3.86 8.34 -40.82 -0.34 3.52 16 32 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.64 8.01 -51.93 -0.42 0.22 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.40 7.15 -51.93 -0.37 0.03 16 38 H 0.15 0.60 7.99 -52.48 -0.42 0.18 16 39 H 0.15 0.25 8.06 -52.48 -0.42 -0.17 16 40 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.09 0.98 6.45 -51.93 -0.34 0.64 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -35.91 371.32 -10.14 -46.06 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.65 Total: -0.31 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -2.40 Total: -4.82 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.58 Total: -46.12 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.91 -10.14 -46.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.244 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds