Wall clock time and date at job start Tue Mar 31 2020 22:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48495 * 109.46899 * 269.99766 * 3 2 1 5 5 H 1.48497 * 109.47255 * 30.00013 * 3 2 1 6 6 H 1.48504 * 109.46646 * 150.00128 * 3 2 1 7 7 C 1.38798 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 179.97438 * 7 2 1 9 9 S 1.76194 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99902 * 179.97438 * 9 7 2 11 11 C 1.50709 * 109.47090 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00057 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99956 * 180.02562 * 11 10 9 14 14 C 1.46493 * 119.99987 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47423 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.87650 * 57.38319 * 15 14 13 17 17 C 1.55143 * 110.98981 * 293.54660 * 15 14 13 18 18 C 1.54313 * 103.01680 * 206.21553 * 17 15 14 19 19 N 1.47437 * 107.23854 * 22.28401 * 18 17 15 20 20 C 1.38998 * 111.00330 * 123.25565 * 19 18 17 21 21 C 1.39070 * 119.68786 * 59.85399 * 20 19 18 22 22 C 1.38372 * 119.15468 * 179.97438 * 21 20 19 23 23 C 1.38761 * 118.53741 * 359.75037 * 22 21 20 24 24 C 1.38376 * 119.29984 * 0.51465 * 23 22 21 25 25 F 1.35104 * 119.60027 * 179.74743 * 24 23 22 26 26 N 1.32130 * 120.79381 * 359.47611 * 24 23 22 27 27 C 1.47849 * 108.56310 * 0.98708 * 19 18 17 28 28 H 0.97001 * 119.99881 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47269 * 60.00310 * 10 9 7 30 30 H 1.08994 * 109.47243 * 299.99651 * 10 9 7 31 31 H 0.97002 * 119.99877 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47337 * 59.99443 * 14 13 11 33 33 H 1.09001 * 109.46811 * 299.99157 * 14 13 11 34 34 H 1.09000 * 110.70509 * 87.83005 * 17 15 14 35 35 H 1.08999 * 110.70231 * 324.59826 * 17 15 14 36 36 H 1.09000 * 109.88910 * 262.86815 * 18 17 15 37 37 H 1.09006 * 110.02486 * 141.76481 * 18 17 15 38 38 H 1.08004 * 120.41955 * 359.97438 * 21 20 19 39 39 H 1.08004 * 120.73173 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.34806 * 180.23952 * 23 22 21 41 41 H 1.08997 * 110.37081 * 94.73975 * 27 19 18 42 42 H 1.09004 * 110.37184 * 217.07394 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 -0.0009 15 6 3.5026 -8.6985 -0.0007 16 1 4.1525 -8.5282 0.8576 17 6 4.3011 -8.6116 -1.3281 18 6 4.9291 -10.0160 -1.4484 19 7 4.1121 -10.9315 -0.6311 20 6 3.6333 -11.9891 -1.3955 21 6 4.5302 -12.8416 -2.0303 22 6 4.0415 -13.8911 -2.7881 23 6 2.6671 -14.0572 -2.8822 24 6 1.8313 -13.1686 -2.2291 25 9 0.4921 -13.3215 -2.3208 26 7 2.3273 -12.1754 -1.5125 27 6 2.9992 -10.1630 -0.0338 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8894 31 1 3.8010 -6.1834 0.0006 32 1 1.7228 -7.8746 -0.8915 33 1 1.7211 -7.8755 0.8885 34 1 5.0756 -7.8474 -1.2626 35 1 3.6337 -8.4146 -2.1670 36 1 5.9526 -9.9979 -1.0740 37 1 4.9209 -10.3406 -2.4890 38 1 5.5946 -12.6864 -1.9329 39 1 4.7150 -14.5688 -3.2916 40 1 2.2540 -14.8688 -3.4627 41 1 2.1065 -10.2436 -0.6541 42 1 2.7933 -10.5165 0.9766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100959878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:53 Heat of formation + Delta-G solvation = -53.164214 kcal Electronic energy + Delta-G solvation = -25478.423475 eV Core-core repulsion = 21498.500882 eV Total energy + Delta-G solvation = -3979.922593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08455 -41.88698 -40.67560 -39.38929 -36.21640 -34.58207 -33.89673 -33.40671 -31.40058 -30.23452 -29.88824 -27.69803 -26.34236 -24.59357 -24.19058 -22.36585 -21.64594 -21.40434 -19.83481 -19.03201 -18.41445 -17.80094 -17.69946 -17.18156 -17.06257 -16.91854 -16.87554 -16.50121 -16.41311 -15.74127 -15.18553 -14.99993 -14.74752 -14.58851 -14.45032 -14.28685 -14.22308 -14.03105 -13.53231 -13.26432 -13.17099 -13.16197 -12.88810 -12.82401 -12.61739 -12.27921 -12.00446 -11.74615 -11.72048 -11.14263 -11.14049 -10.98493 -10.78877 -10.57191 -10.26975 -10.15213 -9.24483 -8.67092 -8.34332 -6.12793 -0.10945 0.13938 1.26879 1.43005 1.47349 1.57664 1.60576 2.17008 2.25681 2.28868 2.53039 2.82665 2.99808 3.31053 3.42023 3.51290 3.67807 3.74127 3.95262 3.99960 4.10248 4.21514 4.23363 4.28203 4.31712 4.34680 4.51364 4.57575 4.67882 4.71772 4.73693 4.87141 4.89005 4.95056 5.05098 5.10225 5.23513 5.40335 5.42226 5.43875 5.46939 6.00615 6.20143 6.50316 6.63697 7.06809 7.24271 8.74889 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027039 B = 0.001761 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.293201 B =15894.438617 C =16491.498659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.127 4.127 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.135 3.865 15 C -0.095 4.095 16 H 0.114 0.886 17 C -0.136 4.136 18 C 0.049 3.951 19 N -0.468 5.468 20 C 0.320 3.680 21 C -0.186 4.186 22 C -0.018 4.018 23 C -0.214 4.214 24 C 0.297 3.703 25 F -0.129 7.129 26 N -0.587 5.587 27 C 0.051 3.949 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.418 0.582 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.170 0.830 41 H 0.064 0.936 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.729 -30.254 -5.795 36.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.279 4.279 11 C 0.318 3.682 12 O -0.448 6.448 13 N -0.362 5.362 14 C 0.011 3.989 15 C -0.114 4.114 16 H 0.132 0.868 17 C -0.174 4.174 18 C -0.075 4.075 19 N -0.185 5.185 20 C 0.089 3.911 21 C -0.209 4.209 22 C -0.043 4.043 23 C -0.236 4.236 24 C 0.144 3.856 25 F -0.108 7.108 26 N -0.308 5.308 27 C -0.076 4.076 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.256 0.744 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.189 0.811 39 H 0.208 0.792 40 H 0.188 0.812 41 H 0.082 0.918 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.321 -30.139 -4.965 34.632 hybrid contribution 0.886 1.047 -0.696 1.538 sum 17.207 -29.092 -5.662 34.271 Atomic orbital electron populations 1.70197 1.08035 1.28588 1.48059 1.26164 0.95978 1.03428 0.93770 0.84930 0.78213 0.75902 0.78785 1.19310 1.20410 1.18033 1.23207 0.95394 0.91869 1.58786 0.89709 1.85647 1.10816 0.99447 1.97064 1.23360 1.03452 0.94057 1.07000 1.20128 0.86200 0.86817 0.75076 1.90701 1.17686 1.86160 1.50217 1.45630 1.10341 1.04688 1.75492 1.21171 0.96265 0.80082 1.01372 1.22452 0.96001 0.92498 1.00441 0.86760 1.22920 1.00296 0.97918 0.96286 1.23114 0.98476 0.89445 0.96487 1.60985 1.19947 1.09582 1.28013 1.19995 0.86129 0.94887 0.90131 1.21974 1.02070 0.96427 1.00406 1.21869 0.94050 0.95244 0.93137 1.22057 0.94770 1.02109 1.04669 1.18325 0.78590 0.93003 0.95661 1.91600 1.30553 1.94475 1.94212 1.66624 1.17520 1.23557 1.23052 1.22917 0.93054 0.91012 1.00640 0.92037 0.86951 0.86972 0.74426 0.93292 0.92323 0.87274 0.92235 0.86445 0.91046 0.81051 0.79236 0.81220 0.91796 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.54 -31.07 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.77 20.57 -56.49 -1.16 -9.94 16 10 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 11 C 0.53 19.65 7.85 87.66 0.69 20.34 16 12 O -0.57 -27.12 15.86 -3.01 -0.05 -27.17 16 13 N -0.71 -17.21 5.41 -463.07 -2.50 -19.72 16 14 C 0.14 3.10 5.12 86.38 0.44 3.54 16 15 C -0.09 -1.40 3.10 -9.41 -0.03 -1.43 16 16 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 17 C -0.14 -1.58 6.12 31.77 0.19 -1.38 16 18 C 0.05 0.48 6.44 86.65 0.56 1.04 16 19 N -0.47 -7.11 5.20 -691.79 -3.60 -10.70 16 20 C 0.32 5.44 6.15 133.04 0.82 6.26 16 21 C -0.19 -1.80 9.04 22.50 0.20 -1.60 16 22 C -0.02 -0.12 10.16 22.43 0.23 0.11 16 23 C -0.21 -2.43 10.08 22.43 0.23 -2.21 16 24 C 0.30 5.96 8.41 84.68 0.71 6.67 16 25 F -0.13 -2.98 17.29 44.97 0.78 -2.20 16 26 N -0.59 -13.24 8.18 -194.33 -1.59 -14.83 16 27 C 0.05 0.94 5.84 86.77 0.51 1.44 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 30 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 31 H 0.42 6.80 8.34 -92.71 -0.77 6.03 16 32 H 0.05 1.33 8.11 -2.39 -0.02 1.31 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.92 8.01 -2.39 -0.02 0.90 16 36 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 0.66 7.15 -2.38 -0.02 0.64 16 38 H 0.17 0.69 7.99 -2.91 -0.02 0.66 16 39 H 0.19 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 41 H 0.06 1.52 6.45 -2.39 -0.02 1.50 16 42 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -83.80 371.32 0.57 -83.23 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.28 Total: 13.01 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 6.10 Total: -1.07 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -7.40 Total: -101.41 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.94 kcal Total: -83.80 0.57 -83.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.066 kcal (2) G-P(sol) polarization free energy of solvation -83.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds