Wall clock time and date at job start Tue Mar 31 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47081 * 270.00150 * 3 2 1 5 5 H 1.48500 * 109.46959 * 29.99917 * 3 2 1 6 6 H 1.48499 * 109.46999 * 149.99918 * 3 2 1 7 7 C 1.38795 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99469 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00221 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47307 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99897 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00357 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00339 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47218 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.46865 * 179.97438 * 15 14 13 17 17 C 1.38995 * 119.99494 * 90.00086 * 16 15 14 18 18 C 1.39064 * 119.69204 * 351.04622 * 17 16 15 19 19 C 1.38385 * 119.15611 * 179.78872 * 18 17 16 20 20 C 1.38759 * 118.53367 * 0.47953 * 19 18 17 21 21 C 1.38368 * 119.30551 * 359.74296 * 20 19 18 22 22 F 1.35099 * 119.60583 * 180.02562 * 21 20 19 23 23 N 1.32138 * 120.79364 * 0.02562 * 21 20 19 24 24 C 1.46493 * 120.00122 * 269.99938 * 16 15 14 25 25 C 1.53002 * 117.50306 * 10.81415 * 24 16 15 26 26 C 1.53001 * 117.49980 * 302.15752 * 24 16 15 27 27 H 0.97006 * 119.99542 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47198 * 60.00016 * 10 9 7 29 29 H 1.09004 * 109.47013 * 300.00196 * 10 9 7 30 30 H 0.97001 * 119.99819 * 359.97438 * 13 11 10 31 31 H 1.08996 * 109.47485 * 59.99222 * 14 13 11 32 32 H 1.09004 * 109.46928 * 299.99619 * 14 13 11 33 33 H 1.09000 * 109.46817 * 59.99868 * 15 14 13 34 34 H 1.08991 * 109.46846 * 299.99870 * 15 14 13 35 35 H 1.08002 * 120.42124 * 0.02562 * 18 17 16 36 36 H 1.08000 * 120.72920 * 180.21731 * 19 18 17 37 37 H 1.07994 * 120.34616 * 179.72038 * 20 19 18 38 38 H 1.09000 * 115.54935 * 156.48485 * 24 16 15 39 39 H 1.09006 * 117.49237 * 0.02562 * 25 24 16 40 40 H 1.08991 * 117.50194 * 145.01660 * 25 24 16 41 41 H 1.09002 * 117.49976 * 214.98453 * 26 24 16 42 42 H 1.09004 * 117.49838 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5022 0.0038 13 7 2.8440 -6.3431 0.0049 14 6 2.3303 -7.7151 0.0050 15 6 3.5024 -8.6986 0.0060 16 7 2.9885 -10.0705 0.0066 17 6 2.7453 -10.7220 -1.1969 18 6 2.8113 -10.0114 -2.3904 19 6 2.5714 -10.6721 -3.5825 20 6 2.2624 -12.0242 -3.5405 21 6 2.2088 -12.6689 -2.3174 22 9 1.9091 -13.9854 -2.2694 23 7 2.4473 -12.0126 -1.1956 24 6 2.7312 -10.7557 1.2756 25 6 2.7733 -9.9154 2.5535 26 6 3.9023 -10.9031 2.2491 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7306 0.8928 29 1 3.1244 -3.7321 -0.8872 30 1 3.8008 -6.1836 0.0051 31 1 1.7225 -7.8756 -0.8855 32 1 1.7208 -7.8748 0.8944 33 1 4.1104 -8.5382 0.8963 34 1 4.1114 -8.5388 -0.8836 35 1 3.0506 -8.9583 -2.3874 36 1 2.6195 -10.1459 -4.5244 37 1 2.0655 -12.5674 -4.4528 38 1 2.0074 -11.5696 1.2321 39 1 2.9921 -8.8526 2.4499 40 1 2.0775 -10.1766 3.3508 41 1 3.9489 -11.8138 2.8462 42 1 4.8644 -10.4906 1.9451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101283627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:29 Heat of formation + Delta-G solvation = 1.287287 kcal Electronic energy + Delta-G solvation = -25680.484661 eV Core-core repulsion = 21702.923262 eV Total energy + Delta-G solvation = -3977.561399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.27308 -40.78938 -39.30845 -38.43206 -35.44139 -34.10001 -32.93487 -32.45967 -30.71976 -29.49942 -27.95474 -25.52753 -24.27130 -23.84690 -22.88668 -22.67143 -20.87888 -20.34931 -18.59910 -17.97095 -17.85204 -16.57820 -16.46354 -16.40365 -16.26422 -16.14804 -15.54662 -15.30371 -14.89193 -14.83022 -14.27664 -14.10191 -13.89826 -13.79532 -13.44507 -13.24586 -12.88860 -12.70193 -12.58481 -12.51318 -12.20971 -11.84447 -11.57172 -11.48446 -11.09181 -11.05683 -10.80609 -10.79555 -10.40105 -10.02728 -9.86893 -9.81548 -9.50884 -9.10843 -9.01716 -8.27804 -7.99742 -6.54054 -6.24832 -3.95875 0.72201 0.93264 2.09261 3.00819 3.01561 3.19952 3.25643 3.27826 3.29244 3.38324 3.55681 3.71076 4.17118 4.18493 4.33460 4.45737 4.48942 4.55283 4.62906 4.68385 4.77295 4.81412 4.93775 5.10242 5.10494 5.30255 5.34118 5.41576 5.50243 5.52381 5.54980 5.62622 5.73160 5.79364 5.83126 5.86310 6.07781 6.17333 6.32833 6.49298 6.88093 7.48804 7.55807 7.57889 8.31836 8.51861 9.20500 10.82542 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002015 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.094626 B =13892.281220 C =14750.489288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.739 5.739 14 C 0.100 3.900 15 C 0.112 3.888 16 N -0.571 5.571 17 C 0.442 3.558 18 C -0.244 4.244 19 C -0.006 4.006 20 C -0.253 4.253 21 C 0.352 3.648 22 F -0.114 7.114 23 N -0.569 5.569 24 C 0.097 3.903 25 C -0.189 4.189 26 C -0.194 4.194 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 -24.432 -2.524 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.387 6.387 13 N -0.395 5.395 14 C -0.026 4.026 15 C -0.012 4.012 16 N -0.282 5.282 17 C 0.208 3.792 18 C -0.269 4.269 19 C -0.031 4.031 20 C -0.277 4.277 21 C 0.198 3.802 22 F -0.093 7.093 23 N -0.292 5.292 24 C -0.008 4.008 25 C -0.227 4.227 26 C -0.233 4.233 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.232 0.768 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.611 -25.072 -1.600 26.558 hybrid contribution 2.403 1.466 -0.639 2.887 sum 11.014 -23.606 -2.239 26.145 Atomic orbital electron populations 1.70021 1.05956 1.27492 1.46766 1.25001 0.95039 0.99061 0.94518 0.86162 0.79396 0.81542 0.78360 1.20256 1.20743 1.19696 1.22857 0.94890 0.91609 1.59054 0.90906 1.85434 1.04830 0.96363 1.96727 1.23527 1.06650 0.95199 1.04985 1.20327 0.86484 0.86205 0.75089 1.90723 1.15368 1.85517 1.47087 1.45872 1.09998 1.05125 1.78504 1.21747 0.96427 0.80840 1.03549 1.21674 0.95752 0.79503 1.04254 1.45726 1.68363 1.12301 1.01779 1.17674 0.89439 0.86238 0.85866 1.21560 1.11778 1.02009 0.91537 1.21229 0.90717 0.92762 0.98404 1.21521 1.12073 0.96592 0.97518 1.17659 0.94357 0.78958 0.89188 1.91625 1.89807 1.30909 1.96969 1.66220 1.22736 1.09137 1.31153 1.21600 1.00947 0.98844 0.79381 1.23496 1.02350 0.98188 0.98681 1.23429 0.94525 1.01706 1.03641 0.92153 0.89150 0.89145 0.76804 0.91085 0.90882 0.89119 0.89331 0.83966 0.83605 0.83843 0.84793 0.87973 0.87653 0.88097 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.96 9.50 30.94 0.29 -14.66 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.91 6.16 36.00 0.22 -2.69 16 11 C 0.53 9.30 7.85 -10.99 -0.09 9.22 16 12 O -0.51 -11.30 15.86 5.55 0.09 -11.21 16 13 N -0.74 -8.51 5.56 -60.29 -0.33 -8.84 16 14 C 0.10 1.04 5.72 -4.04 -0.02 1.02 16 15 C 0.11 0.81 4.38 -4.04 -0.02 0.79 16 16 N -0.57 -5.07 2.93 -166.27 -0.49 -5.55 16 17 C 0.44 4.48 7.35 -155.01 -1.14 3.34 16 18 C -0.24 -2.08 8.91 -39.22 -0.35 -2.43 16 19 C -0.01 -0.04 10.16 -39.33 -0.40 -0.44 16 20 C -0.25 -2.05 10.08 -39.34 -0.40 -2.44 16 21 C 0.35 3.69 8.40 -17.37 -0.15 3.54 16 22 F -0.11 -1.22 17.29 2.25 0.04 -1.18 16 23 N -0.57 -6.52 9.31 -12.78 -0.12 -6.64 16 24 C 0.10 0.84 6.22 -67.93 -0.42 0.41 16 25 C -0.19 -1.41 9.54 -26.70 -0.25 -1.66 16 26 C -0.19 -1.38 10.07 -26.70 -0.27 -1.65 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 29 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 30 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 31 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 32 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 33 H 0.09 0.54 6.28 -51.93 -0.33 0.21 16 34 H 0.09 0.51 6.58 -51.93 -0.34 0.17 16 35 H 0.14 1.03 5.96 -52.49 -0.31 0.72 16 36 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.13 1.28 7.69 -51.93 -0.40 0.88 16 39 H 0.10 0.78 5.93 -51.93 -0.31 0.47 16 40 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.65 8.00 -51.93 -0.42 0.24 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -35.12 374.16 -10.07 -45.19 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.31 Total: 1.17 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -3.08 Total: -5.69 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.21 Total: -46.15 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.12 -10.07 -45.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101283627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.477 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds