Wall clock time and date at job start Tue Mar 31 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86802 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47081 * 270.00150 * 3 2 1 5 5 H 1.48500 * 109.46959 * 29.99917 * 3 2 1 6 6 H 1.48499 * 109.46999 * 149.99918 * 3 2 1 7 7 C 1.38795 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99469 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00221 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47307 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99897 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00357 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00339 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47218 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.46865 * 179.97438 * 15 14 13 17 17 C 1.38995 * 119.99494 * 90.00086 * 16 15 14 18 18 C 1.39064 * 119.69204 * 351.04622 * 17 16 15 19 19 C 1.38385 * 119.15611 * 179.78872 * 18 17 16 20 20 C 1.38759 * 118.53367 * 0.47953 * 19 18 17 21 21 C 1.38368 * 119.30551 * 359.74296 * 20 19 18 22 22 F 1.35099 * 119.60583 * 180.02562 * 21 20 19 23 23 N 1.32138 * 120.79364 * 0.02562 * 21 20 19 24 24 C 1.46493 * 120.00122 * 269.99938 * 16 15 14 25 25 C 1.53002 * 117.50306 * 10.81415 * 24 16 15 26 26 C 1.53001 * 117.49980 * 302.15752 * 24 16 15 27 27 H 0.97006 * 119.99542 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47198 * 60.00016 * 10 9 7 29 29 H 1.09004 * 109.47013 * 300.00196 * 10 9 7 30 30 H 0.97001 * 119.99819 * 359.97438 * 13 11 10 31 31 H 1.08996 * 109.47485 * 59.99222 * 14 13 11 32 32 H 1.09004 * 109.46928 * 299.99619 * 14 13 11 33 33 H 1.09000 * 109.46817 * 59.99868 * 15 14 13 34 34 H 1.08991 * 109.46846 * 299.99870 * 15 14 13 35 35 H 1.08002 * 120.42124 * 0.02562 * 18 17 16 36 36 H 1.08000 * 120.72920 * 180.21731 * 19 18 17 37 37 H 1.07994 * 120.34616 * 179.72038 * 20 19 18 38 38 H 1.09000 * 115.54935 * 156.48485 * 24 16 15 39 39 H 1.09006 * 117.49237 * 0.02562 * 25 24 16 40 40 H 1.08991 * 117.50194 * 145.01660 * 25 24 16 41 41 H 1.09002 * 117.49976 * 214.98453 * 26 24 16 42 42 H 1.09004 * 117.49838 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5022 0.0038 13 7 2.8440 -6.3431 0.0049 14 6 2.3303 -7.7151 0.0050 15 6 3.5024 -8.6986 0.0060 16 7 2.9885 -10.0705 0.0066 17 6 2.7453 -10.7220 -1.1969 18 6 2.8113 -10.0114 -2.3904 19 6 2.5714 -10.6721 -3.5825 20 6 2.2624 -12.0242 -3.5405 21 6 2.2088 -12.6689 -2.3174 22 9 1.9091 -13.9854 -2.2694 23 7 2.4473 -12.0126 -1.1956 24 6 2.7312 -10.7557 1.2756 25 6 2.7733 -9.9154 2.5535 26 6 3.9023 -10.9031 2.2491 27 1 -0.4850 0.8401 -0.0004 28 1 3.1244 -3.7306 0.8928 29 1 3.1244 -3.7321 -0.8872 30 1 3.8008 -6.1836 0.0051 31 1 1.7225 -7.8756 -0.8855 32 1 1.7208 -7.8748 0.8944 33 1 4.1104 -8.5382 0.8963 34 1 4.1114 -8.5388 -0.8836 35 1 3.0506 -8.9583 -2.3874 36 1 2.6195 -10.1459 -4.5244 37 1 2.0655 -12.5674 -4.4528 38 1 2.0074 -11.5696 1.2321 39 1 2.9921 -8.8526 2.4499 40 1 2.0775 -10.1766 3.3508 41 1 3.9489 -11.8138 2.8462 42 1 4.8644 -10.4906 1.9451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101283627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:29 Heat of formation + Delta-G solvation = -21.494388 kcal Electronic energy + Delta-G solvation = -25681.472548 eV Core-core repulsion = 21702.923262 eV Total energy + Delta-G solvation = -3978.549286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.03544 -41.47734 -40.56912 -39.15971 -36.37446 -34.95743 -34.56528 -33.64116 -31.81275 -30.44964 -28.91652 -27.62951 -25.00705 -24.59673 -23.57237 -23.27111 -21.91803 -21.28085 -19.86081 -19.21347 -18.66686 -17.77815 -17.43807 -17.24068 -17.06168 -16.89121 -16.86133 -16.60395 -16.29091 -15.84231 -15.46688 -15.06341 -15.01484 -14.66038 -14.52504 -14.36838 -14.06954 -13.58008 -13.55072 -13.39968 -13.14655 -13.09805 -12.88081 -12.59928 -12.52856 -12.34227 -12.13454 -11.71766 -11.41612 -11.12758 -11.04525 -11.00246 -10.72742 -10.49925 -10.24661 -10.15883 -8.65399 -8.64841 -8.33162 -6.10930 0.03348 0.30194 1.24062 1.40883 1.43821 1.53123 1.62416 1.63940 2.28380 2.36618 2.61900 2.70634 2.96993 3.01231 3.34318 3.57795 3.71433 3.77040 3.86377 3.91044 4.01337 4.05756 4.08685 4.15762 4.24866 4.33586 4.34359 4.55086 4.61597 4.71361 4.73494 4.87169 4.88129 4.95345 5.06684 5.18026 5.22563 5.34146 5.43827 5.55414 5.74777 6.20633 6.21499 6.50041 6.81275 7.08469 7.25672 8.75893 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002015 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.094626 B =13892.281220 C =14750.489288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.543 4.543 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.567 6.567 13 N -0.707 5.707 14 C 0.106 3.894 15 C 0.121 3.879 16 N -0.573 5.573 17 C 0.423 3.577 18 C -0.246 4.246 19 C -0.003 4.003 20 C -0.246 4.246 21 C 0.325 3.675 22 F -0.124 7.124 23 N -0.597 5.597 24 C 0.079 3.921 25 C -0.185 4.185 26 C -0.180 4.180 27 H 0.270 0.730 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.421 0.579 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.157 0.843 36 H 0.179 0.821 37 H 0.166 0.834 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.905 -24.026 -3.193 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.691 4.691 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.445 6.445 13 N -0.362 5.362 14 C -0.020 4.020 15 C -0.003 4.003 16 N -0.283 5.283 17 C 0.189 3.811 18 C -0.271 4.271 19 C -0.028 4.028 20 C -0.270 4.270 21 C 0.172 3.828 22 F -0.103 7.103 23 N -0.321 5.321 24 C -0.026 4.026 25 C -0.222 4.222 26 C -0.219 4.219 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.258 0.742 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.175 0.825 36 H 0.196 0.804 37 H 0.184 0.816 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.760 -24.712 -2.268 27.461 hybrid contribution 1.462 1.188 -0.446 1.936 sum 13.222 -23.523 -2.714 27.121 Atomic orbital electron populations 1.70194 1.08000 1.28539 1.48141 1.26136 0.95952 1.03370 0.93851 0.84956 0.78225 0.76051 0.78771 1.19325 1.20557 1.18062 1.23203 0.95382 0.91902 1.58624 0.89706 1.85646 1.10817 0.99418 1.97063 1.23362 1.03434 0.94001 1.07122 1.20073 0.86141 0.86692 0.74975 1.90717 1.17690 1.86088 1.49978 1.45483 1.10502 1.04385 1.75867 1.21773 0.97674 0.80460 1.02104 1.21694 0.94349 0.77822 1.06385 1.45777 1.68503 1.12559 1.01491 1.17983 0.90106 0.86144 0.86851 1.21818 1.11230 1.02644 0.91371 1.21653 0.89328 0.92436 0.99367 1.21818 1.10705 0.97083 0.97349 1.18016 0.95880 0.78914 0.90037 1.91592 1.90096 1.31580 1.97053 1.66132 1.23664 1.10140 1.32148 1.21565 1.01914 0.99200 0.79944 1.23507 1.02604 0.98189 0.97942 1.23455 0.94305 1.01751 1.02407 0.92079 0.86943 0.86779 0.74159 0.92509 0.92571 0.87150 0.87002 0.82536 0.80392 0.81619 0.86607 0.87845 0.87437 0.87552 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.41 13.22 21.65 0.29 -55.12 16 2 C 0.01 0.64 5.49 84.86 0.47 1.11 16 3 Si 1.00 42.65 29.55 68.60 2.03 44.68 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.54 -30.15 9.50 67.95 0.65 -29.51 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.16 -8.44 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -4.67 6.16 71.23 0.44 -4.23 16 11 C 0.54 18.04 7.85 87.65 0.69 18.72 16 12 O -0.57 -25.27 15.86 -3.04 -0.05 -25.32 16 13 N -0.71 -14.42 5.56 -463.06 -2.57 -17.00 16 14 C 0.11 2.02 5.72 86.38 0.49 2.51 16 15 C 0.12 1.42 4.38 86.38 0.38 1.80 16 16 N -0.57 -9.48 2.93 -679.96 -1.99 -11.47 16 17 C 0.42 8.23 7.35 133.03 0.98 9.20 16 18 C -0.25 -3.70 8.91 22.50 0.20 -3.50 16 19 C 0.00 -0.03 10.16 22.43 0.23 0.19 16 20 C -0.25 -3.61 10.08 22.43 0.23 -3.38 16 21 C 0.32 6.80 8.40 84.68 0.71 7.51 16 22 F -0.12 -2.74 17.29 44.97 0.78 -1.96 16 23 N -0.60 -13.81 9.31 -194.34 -1.81 -15.62 16 24 C 0.08 1.32 6.22 44.99 0.28 1.60 16 25 C -0.18 -2.55 9.54 30.62 0.29 -2.26 16 26 C -0.18 -2.30 10.07 30.62 0.31 -1.99 16 27 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.42 5.04 8.47 -92.71 -0.79 4.25 16 31 H 0.06 1.30 7.55 -2.39 -0.02 1.28 16 32 H 0.06 1.31 7.45 -2.38 -0.02 1.30 16 33 H 0.11 0.92 6.28 -2.39 -0.02 0.90 16 34 H 0.11 0.85 6.58 -2.39 -0.02 0.83 16 35 H 0.16 1.81 5.96 -2.91 -0.02 1.79 16 36 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.17 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.12 2.35 7.69 -2.39 -0.02 2.33 16 39 H 0.10 1.40 5.93 -2.38 -0.01 1.38 16 40 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.16 8.00 -2.39 -0.02 1.14 16 Total: -1.00 -80.27 374.16 2.12 -78.15 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.28 Total: 15.46 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.33 Total: -2.19 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -6.09 Total: -99.21 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -80.27 2.12 -78.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101283627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.654 kcal (2) G-P(sol) polarization free energy of solvation -80.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds