Wall clock time and date at job start Tue Mar 31 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 120.00215 * 2 1 4 4 H 1.48506 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47414 * 300.00163 * 3 2 1 6 6 H 1.48503 * 109.47055 * 60.00042 * 3 2 1 7 7 C 1.38804 * 119.99398 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99253 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99984 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47309 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99674 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00590 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00509 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.46593 * 324.99907 * 14 13 11 16 16 C 1.52998 * 109.47003 * 204.99732 * 14 13 11 17 17 N 1.46500 * 109.47071 * 55.00255 * 16 14 13 18 18 C 1.39001 * 120.00058 * 180.02562 * 17 16 14 19 19 C 1.39068 * 119.68766 * 359.97438 * 18 17 16 20 20 C 1.38377 * 119.15660 * 179.97438 * 19 18 17 21 21 C 1.38752 * 118.53527 * 0.02562 * 20 19 18 22 22 C 1.38374 * 119.30692 * 0.02562 * 21 20 19 23 23 F 1.35100 * 119.60498 * 179.97438 * 22 21 20 24 24 N 1.32139 * 120.78951 * 359.74205 * 22 21 20 25 25 C 1.52996 * 109.47073 * 84.99721 * 14 13 11 26 26 C 1.53002 * 117.49888 * 231.25527 * 25 14 13 27 27 C 1.53000 * 117.50107 * 299.91289 * 25 14 13 28 28 H 0.96998 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00479 * 10 9 7 30 30 H 1.09000 * 109.46852 * 300.00005 * 10 9 7 31 31 H 0.97006 * 119.99568 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.47096 * 174.99683 * 16 14 13 33 33 H 1.08996 * 109.47337 * 294.99987 * 16 14 13 34 34 H 0.96999 * 120.00125 * 359.97438 * 17 16 14 35 35 H 1.08005 * 120.42147 * 359.96153 * 19 18 17 36 36 H 1.08003 * 120.72912 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.34779 * 179.97438 * 21 20 19 38 38 H 1.09002 * 115.54951 * 85.58501 * 25 14 13 39 39 H 1.09000 * 117.49996 * 215.00804 * 26 25 14 40 40 H 1.08999 * 117.49664 * 0.02562 * 26 25 14 41 41 H 1.09008 * 117.49673 * 359.97438 * 27 25 14 42 42 H 1.08999 * 117.49959 * 144.99502 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 2.3300 -7.7152 -0.0019 15 1 1.4137 -7.7604 0.5865 16 6 3.3749 -8.6516 0.6083 17 7 3.7455 -8.1677 1.9405 18 6 4.6860 -8.8599 2.6945 19 6 5.2707 -10.0112 2.1782 20 6 6.2060 -10.6913 2.9380 21 6 6.5265 -10.1960 4.1939 22 6 5.9056 -9.0453 4.6469 23 9 6.2127 -8.5581 5.8690 24 7 5.0193 -8.4148 3.8965 25 6 2.0349 -8.1480 -1.4394 26 6 0.6530 -8.7368 -1.7303 27 6 1.0067 -7.3324 -2.2258 28 1 -0.4850 0.8400 -0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1242 -3.7314 -0.8905 31 1 3.8006 -6.1837 -0.0004 32 1 2.9595 -9.6560 0.6892 33 1 4.2589 -8.6741 -0.0290 34 1 3.3351 -7.3640 2.2961 35 1 4.9980 -10.3700 1.1966 36 1 6.6763 -11.5878 2.5617 37 1 7.2522 -10.7038 4.8118 38 1 2.8820 -8.5559 -1.9909 39 1 0.5910 -9.5321 -2.4731 40 1 -0.0460 -8.8154 -0.8977 41 1 0.5401 -6.4876 -1.7189 42 1 1.1774 -7.2036 -3.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109763268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:24 Heat of formation + Delta-G solvation = -10.042391 kcal Electronic energy + Delta-G solvation = -25850.078767 eV Core-core repulsion = 21872.026077 eV Total energy + Delta-G solvation = -3978.052690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.21894 -40.57254 -39.82609 -37.44451 -36.13884 -33.89283 -32.89516 -32.44603 -30.80395 -29.31675 -27.97093 -25.50862 -24.42862 -23.70628 -22.41566 -22.18932 -21.01169 -20.36995 -18.46566 -18.09911 -17.72872 -16.73578 -16.43812 -16.30412 -16.14189 -15.99831 -15.50318 -15.37877 -14.82095 -14.76991 -14.56373 -13.95954 -13.84103 -13.70687 -13.44257 -13.22709 -13.06132 -12.58495 -12.55847 -12.21954 -12.10412 -11.75998 -11.30803 -11.07916 -11.03461 -10.78284 -10.72783 -10.43856 -10.31049 -10.00780 -9.97322 -9.82195 -9.45224 -9.09438 -8.96793 -8.26782 -8.15369 -6.52267 -6.23873 -3.94276 0.75688 0.97836 2.47459 2.89277 2.98021 3.20714 3.25861 3.30542 3.39433 3.55150 3.64004 3.88870 4.18537 4.21980 4.30011 4.52174 4.66307 4.78543 4.80604 4.88408 4.96261 5.02279 5.07575 5.11511 5.11916 5.23763 5.38106 5.46438 5.53908 5.62841 5.69749 5.81345 5.84418 5.94371 6.07501 6.10611 6.13707 6.39823 6.50747 6.57038 7.09058 7.57470 7.59253 7.62125 8.33642 8.51085 9.22050 10.83601 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.002655 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.086142 B =10542.074230 C =12863.408882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.733 5.733 14 C 0.168 3.832 15 H 0.097 0.903 16 C 0.124 3.876 17 N -0.717 5.717 18 C 0.442 3.558 19 C -0.252 4.252 20 C -0.007 4.007 21 C -0.260 4.260 22 C 0.358 3.642 23 F -0.113 7.113 24 N -0.576 5.576 25 C -0.174 4.174 26 C -0.171 4.171 27 C -0.174 4.174 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.254 -25.008 0.742 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.388 5.388 14 C 0.062 3.938 15 H 0.115 0.885 16 C -0.001 4.001 17 N -0.350 5.350 18 C 0.205 3.795 19 C -0.277 4.277 20 C -0.032 4.032 21 C -0.284 4.284 22 C 0.204 3.796 23 F -0.092 7.092 24 N -0.300 5.300 25 C -0.193 4.193 26 C -0.209 4.209 27 C -0.211 4.211 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.143 0.857 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.661 -24.539 0.915 26.388 hybrid contribution 2.764 1.093 0.050 2.973 sum 12.425 -23.446 0.965 26.552 Atomic orbital electron populations 1.70023 1.05941 1.27373 1.46952 1.24993 0.95032 0.99053 0.94514 0.86118 0.79608 0.81874 0.77913 1.19611 1.20560 1.20548 1.22903 0.94928 0.91636 1.58851 0.90908 1.85355 1.04721 0.96336 1.96717 1.23542 1.06713 0.95321 1.04959 1.20302 0.86536 0.86225 0.74524 1.90643 1.15310 1.85408 1.47279 1.46102 1.10077 1.04842 1.77744 1.20632 0.97396 0.81184 0.94580 0.88477 1.21739 0.98122 0.98088 0.82122 1.44616 1.43317 1.30401 1.16634 1.17798 0.87340 0.88160 0.86202 1.21431 1.04230 0.98584 1.03496 1.21174 0.92767 0.97501 0.91764 1.21477 1.07650 0.99428 0.99854 1.17673 0.91430 0.89593 0.80928 1.91635 1.90570 1.87946 1.39055 1.66237 1.20071 1.36383 1.07260 1.22527 0.93866 1.06698 0.96259 1.22945 0.96911 0.97374 1.03653 1.23346 1.01621 0.96251 0.99878 0.92226 0.89242 0.89220 0.76665 0.89937 0.90858 0.75045 0.84275 0.83902 0.83960 0.87747 0.89004 0.88643 0.85721 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 10 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 11 C 0.54 9.02 7.18 -10.99 -0.08 8.94 16 12 O -0.51 -10.31 12.89 5.55 0.07 -10.24 16 13 N -0.73 -8.44 4.50 -53.81 -0.24 -8.68 16 14 C 0.17 1.61 2.43 -67.93 -0.17 1.44 16 15 H 0.10 1.15 7.33 -51.93 -0.38 0.77 16 16 C 0.12 0.84 4.43 -4.04 -0.02 0.83 16 17 N -0.72 -6.54 5.56 -60.43 -0.34 -6.87 16 18 C 0.44 4.46 7.65 -155.01 -1.19 3.28 16 19 C -0.25 -1.85 9.33 -39.22 -0.37 -2.22 16 20 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 21 C -0.26 -2.06 10.08 -39.34 -0.40 -2.46 16 22 C 0.36 4.00 8.41 -17.37 -0.15 3.85 16 23 F -0.11 -1.34 17.29 2.25 0.04 -1.30 16 24 N -0.58 -7.20 10.40 -12.77 -0.13 -7.34 16 25 C -0.17 -1.62 5.36 -90.62 -0.49 -2.10 16 26 C -0.17 -1.65 10.18 -26.69 -0.27 -1.93 16 27 C -0.17 -2.14 9.73 -26.70 -0.26 -2.40 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 32 H 0.08 0.46 7.93 -51.93 -0.41 0.04 16 33 H 0.07 0.39 7.93 -51.93 -0.41 -0.02 16 34 H 0.41 4.43 8.26 -40.82 -0.34 4.09 16 35 H 0.14 0.69 6.70 -52.48 -0.35 0.34 16 36 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 41 H 0.12 2.03 5.03 -51.92 -0.26 1.77 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -34.01 374.12 -10.24 -44.25 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.42 Total: 5.95 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.35 Total: -8.78 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.02 Total: -48.16 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.01 -10.24 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109763268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.209 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds