Wall clock time and date at job start Tue Mar 31 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86794 * 120.00215 * 2 1 4 4 H 1.48506 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47414 * 300.00163 * 3 2 1 6 6 H 1.48503 * 109.47055 * 60.00042 * 3 2 1 7 7 C 1.38804 * 119.99398 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99253 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00371 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99984 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47309 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99674 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00590 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00509 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.46593 * 324.99907 * 14 13 11 16 16 C 1.52998 * 109.47003 * 204.99732 * 14 13 11 17 17 N 1.46500 * 109.47071 * 55.00255 * 16 14 13 18 18 C 1.39001 * 120.00058 * 180.02562 * 17 16 14 19 19 C 1.39068 * 119.68766 * 359.97438 * 18 17 16 20 20 C 1.38377 * 119.15660 * 179.97438 * 19 18 17 21 21 C 1.38752 * 118.53527 * 0.02562 * 20 19 18 22 22 C 1.38374 * 119.30692 * 0.02562 * 21 20 19 23 23 F 1.35100 * 119.60498 * 179.97438 * 22 21 20 24 24 N 1.32139 * 120.78951 * 359.74205 * 22 21 20 25 25 C 1.52996 * 109.47073 * 84.99721 * 14 13 11 26 26 C 1.53002 * 117.49888 * 231.25527 * 25 14 13 27 27 C 1.53000 * 117.50107 * 299.91289 * 25 14 13 28 28 H 0.96998 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00479 * 10 9 7 30 30 H 1.09000 * 109.46852 * 300.00005 * 10 9 7 31 31 H 0.97006 * 119.99568 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.47096 * 174.99683 * 16 14 13 33 33 H 1.08996 * 109.47337 * 294.99987 * 16 14 13 34 34 H 0.96999 * 120.00125 * 359.97438 * 17 16 14 35 35 H 1.08005 * 120.42147 * 359.96153 * 19 18 17 36 36 H 1.08003 * 120.72912 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.34779 * 179.97438 * 21 20 19 38 38 H 1.09002 * 115.54951 * 85.58501 * 25 14 13 39 39 H 1.09000 * 117.49996 * 215.00804 * 26 25 14 40 40 H 1.08999 * 117.49664 * 0.02562 * 26 25 14 41 41 H 1.09008 * 117.49673 * 359.97438 * 27 25 14 42 42 H 1.08999 * 117.49959 * 144.99502 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 2.3300 -7.7152 -0.0019 15 1 1.4137 -7.7604 0.5865 16 6 3.3749 -8.6516 0.6083 17 7 3.7455 -8.1677 1.9405 18 6 4.6860 -8.8599 2.6945 19 6 5.2707 -10.0112 2.1782 20 6 6.2060 -10.6913 2.9380 21 6 6.5265 -10.1960 4.1939 22 6 5.9056 -9.0453 4.6469 23 9 6.2127 -8.5581 5.8690 24 7 5.0193 -8.4148 3.8965 25 6 2.0349 -8.1480 -1.4394 26 6 0.6530 -8.7368 -1.7303 27 6 1.0067 -7.3324 -2.2258 28 1 -0.4850 0.8400 -0.0004 29 1 3.1242 -3.7315 0.8895 30 1 3.1242 -3.7314 -0.8905 31 1 3.8006 -6.1837 -0.0004 32 1 2.9595 -9.6560 0.6892 33 1 4.2589 -8.6741 -0.0290 34 1 3.3351 -7.3640 2.2961 35 1 4.9980 -10.3700 1.1966 36 1 6.6763 -11.5878 2.5617 37 1 7.2522 -10.7038 4.8118 38 1 2.8820 -8.5559 -1.9909 39 1 0.5910 -9.5321 -2.4731 40 1 -0.0460 -8.8154 -0.8977 41 1 0.5401 -6.4876 -1.7189 42 1 1.1774 -7.2036 -3.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109763268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:23 Heat of formation + Delta-G solvation = -33.242178 kcal Electronic energy + Delta-G solvation = -25851.084785 eV Core-core repulsion = 21872.026077 eV Total energy + Delta-G solvation = -3979.058709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.00196 -41.34055 -40.83934 -38.48080 -36.84468 -34.93076 -34.60170 -33.54185 -31.81724 -30.35987 -28.89732 -27.66546 -25.14339 -24.33030 -23.22334 -22.91160 -22.13713 -21.36270 -19.87790 -19.06998 -18.72779 -17.95588 -17.35572 -17.09309 -16.99925 -16.90134 -16.82247 -16.30457 -16.27716 -16.01103 -15.65653 -15.12664 -14.82343 -14.70819 -14.49563 -14.32091 -14.02825 -13.72849 -13.49239 -13.18199 -13.09256 -12.96981 -12.93922 -12.70237 -12.53326 -12.24348 -11.73026 -11.32279 -11.28387 -11.17639 -11.14083 -10.82628 -10.69180 -10.60954 -10.28839 -10.06537 -8.77188 -8.66935 -8.37141 -6.13965 0.11738 0.40806 1.25251 1.38931 1.44742 1.55829 1.59971 1.85106 2.20316 2.26234 2.76392 2.95157 2.97137 2.99382 3.31540 3.48661 3.78432 3.86176 3.95516 3.99964 4.12031 4.21750 4.22786 4.28530 4.30897 4.37913 4.44353 4.49518 4.61975 4.82211 4.85084 4.87591 5.01310 5.09266 5.27335 5.30131 5.37510 5.39974 5.49793 5.56283 5.93526 6.17726 6.36075 6.48242 6.95107 7.04740 7.25818 8.72191 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010146 B = 0.002655 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.086142 B =10542.074230 C =12863.408882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.080 0.920 9 S -0.144 6.144 10 C -0.132 4.132 11 C 0.540 3.460 12 O -0.550 6.550 13 N -0.708 5.708 14 C 0.167 3.833 15 H 0.071 0.929 16 C 0.133 3.867 17 N -0.725 5.725 18 C 0.421 3.579 19 C -0.241 4.241 20 C 0.000 4.000 21 C -0.251 4.251 22 C 0.319 3.681 23 F -0.130 7.130 24 N -0.621 5.621 25 C -0.151 4.151 26 C -0.157 4.157 27 C -0.208 4.208 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.413 0.587 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.172 0.828 36 H 0.186 0.814 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.431 -27.721 -0.549 31.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.098 0.902 9 S 0.083 5.917 10 C -0.284 4.284 11 C 0.326 3.674 12 O -0.428 6.428 13 N -0.361 5.361 14 C 0.063 3.937 15 H 0.089 0.911 16 C 0.009 3.991 17 N -0.356 5.356 18 C 0.185 3.815 19 C -0.266 4.266 20 C -0.025 4.025 21 C -0.275 4.275 22 C 0.166 3.834 23 F -0.110 7.110 24 N -0.346 5.346 25 C -0.171 4.171 26 C -0.195 4.195 27 C -0.245 4.245 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.250 0.750 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.189 0.811 36 H 0.203 0.797 37 H 0.182 0.818 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.891 -27.305 -0.376 30.198 hybrid contribution 1.789 1.789 0.447 2.569 sum 14.680 -25.517 0.071 29.438 Atomic orbital electron populations 1.70180 1.07895 1.28531 1.48104 1.26105 0.95970 1.03264 0.93795 0.84930 0.78574 0.76480 0.78126 1.18193 1.19753 1.20001 1.23230 0.95248 0.92254 1.58693 0.90234 1.85487 1.10225 0.98944 1.97000 1.23383 1.03618 0.95076 1.06283 1.19870 0.86365 0.86326 0.74833 1.90652 1.17033 1.85741 1.49371 1.45804 1.10097 1.04667 1.75576 1.20770 0.97613 0.80233 0.95120 0.91100 1.21837 0.98221 0.97750 0.81257 1.44718 1.43435 1.30127 1.17356 1.18148 0.88089 0.89389 0.85882 1.21829 1.03158 0.96952 1.04613 1.21708 0.91914 0.98269 0.90589 1.21813 1.06968 0.97906 1.00780 1.18110 0.93005 0.91298 0.80938 1.91581 1.90863 1.88414 1.40112 1.66080 1.21443 1.38197 1.08861 1.22617 0.94564 1.04580 0.95312 1.22992 0.96886 0.96107 1.03487 1.23172 1.04774 0.96453 1.00152 0.91991 0.87997 0.87584 0.74984 0.87573 0.87930 0.76564 0.81059 0.79678 0.81841 0.84280 0.86384 0.89762 0.90129 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -31.44 9.50 67.96 0.65 -30.79 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 9 S -0.14 -7.93 20.57 -56.49 -1.16 -9.09 16 10 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 11 C 0.54 18.50 7.18 87.66 0.63 19.13 16 12 O -0.55 -23.41 12.89 -3.06 -0.04 -23.45 16 13 N -0.71 -15.47 4.50 -442.54 -1.99 -17.46 16 14 C 0.17 2.90 2.43 44.99 0.11 3.01 16 15 H 0.07 1.67 7.33 -2.39 -0.02 1.65 16 16 C 0.13 1.31 4.43 86.38 0.38 1.69 16 17 N -0.72 -11.91 5.56 -345.11 -1.92 -13.82 16 18 C 0.42 7.72 7.65 133.04 1.02 8.74 16 19 C -0.24 -2.53 9.33 22.50 0.21 -2.32 16 20 C 0.00 0.00 10.16 22.43 0.23 0.23 16 21 C -0.25 -3.38 10.08 22.43 0.23 -3.16 16 22 C 0.32 7.09 8.41 84.68 0.71 7.80 16 23 F -0.13 -3.23 17.29 44.97 0.78 -2.45 16 24 N -0.62 -15.55 10.40 -194.33 -2.02 -17.57 16 25 C -0.15 -2.40 5.36 -10.79 -0.06 -2.46 16 26 C -0.16 -2.76 10.18 30.62 0.31 -2.45 16 27 C -0.21 -5.08 9.73 30.62 0.30 -4.78 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 31 H 0.41 6.91 8.60 -92.70 -0.80 6.11 16 32 H 0.11 0.64 7.93 -2.39 -0.02 0.63 16 33 H 0.10 0.50 7.93 -2.39 -0.02 0.48 16 34 H 0.40 8.49 8.26 -92.71 -0.77 7.72 16 35 H 0.17 0.62 6.70 -2.91 -0.02 0.60 16 36 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 37 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.14 1.34 8.11 -2.39 -0.02 1.32 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.67 8.05 -2.39 -0.02 1.65 16 41 H 0.08 2.79 5.03 -2.38 -0.01 2.78 16 42 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -81.38 374.12 1.09 -80.29 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -0.49 Total: 22.17 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.62 Total: -8.86 kcal Atomic # 7 Polarization: -99.16 SS G_CDS: -5.64 Total: -104.81 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -81.38 1.09 -80.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109763268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.048 kcal (2) G-P(sol) polarization free energy of solvation -81.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds