Wall clock time and date at job start Tue Mar 31 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00331 * 2 1 4 4 H 1.48504 * 109.47018 * 240.00099 * 3 2 1 5 5 H 1.48507 * 109.46750 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47168 * 119.99831 * 3 2 1 7 7 C 1.38800 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00211 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99547 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99763 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99995 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99703 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99726 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47007 * 34.99037 * 14 13 11 16 16 C 1.52996 * 109.47012 * 154.99585 * 14 13 11 17 17 N 1.46498 * 109.47059 * 304.99483 * 16 14 13 18 18 C 1.39001 * 119.99905 * 179.72491 * 17 16 14 19 19 C 1.39067 * 119.68850 * 0.27756 * 18 17 16 20 20 C 1.38374 * 119.16020 * 179.97438 * 19 18 17 21 21 C 1.38762 * 118.53054 * 0.02562 * 20 19 18 22 22 C 1.38369 * 119.30799 * 359.97438 * 21 20 19 23 23 F 1.35096 * 119.60589 * 180.02562 * 22 21 20 24 24 N 1.32140 * 120.78945 * 359.74452 * 22 21 20 25 25 C 1.53003 * 109.46609 * 274.99704 * 14 13 11 26 26 C 1.52996 * 117.49852 * 128.74926 * 25 14 13 27 27 C 1.52995 * 117.50233 * 60.08634 * 25 14 13 28 28 H 0.97002 * 119.99419 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47644 * 60.00206 * 10 9 7 30 30 H 1.09006 * 109.47075 * 299.99844 * 10 9 7 31 31 H 0.97000 * 119.99883 * 359.97438 * 13 11 10 32 32 H 1.09004 * 109.47066 * 184.99751 * 16 14 13 33 33 H 1.08994 * 109.46974 * 64.99899 * 16 14 13 34 34 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.42417 * 359.95510 * 19 18 17 36 36 H 1.07996 * 120.73592 * 180.02562 * 20 19 18 37 37 H 1.08003 * 120.34424 * 179.97438 * 21 20 19 38 38 H 1.09006 * 115.54473 * 274.41180 * 25 14 13 39 39 H 1.08997 * 117.49676 * 359.97438 * 26 25 14 40 40 H 1.08999 * 117.49788 * 145.01561 * 26 25 14 41 41 H 1.09001 * 117.49820 * 214.97543 * 27 25 14 42 42 H 1.09004 * 117.49643 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9872 -5.3027 0.0017 12 8 0.7909 -5.5022 0.0009 13 7 2.8440 -6.3432 0.0033 14 6 2.3301 -7.7152 0.0034 15 1 1.4149 -7.7604 -0.5869 16 6 3.3762 -8.6515 -0.6046 17 7 3.7495 -8.1678 -1.9361 18 6 4.6954 -8.8571 -2.6860 19 6 5.2789 -10.0084 -2.1684 20 6 6.2189 -10.6863 -2.9245 21 6 6.5457 -10.1882 -4.1777 22 6 5.9264 -9.0371 -4.6316 23 9 6.2397 -8.5472 -5.8510 24 7 5.0283 -8.4144 -3.8890 25 6 2.0320 -8.1478 1.4404 26 6 0.6496 -8.7366 1.7285 27 6 1.0022 -7.3321 2.2246 28 1 -0.4849 0.8401 -0.0004 29 1 3.1237 -3.7310 0.8925 30 1 3.1250 -3.7317 -0.8875 31 1 3.8007 -6.1835 0.0043 32 1 2.9610 -9.6561 -0.6862 33 1 4.2588 -8.6741 0.0345 34 1 3.3399 -7.3641 -2.2926 35 1 5.0023 -10.3688 -1.1885 36 1 6.6877 -11.5832 -2.5476 37 1 7.2758 -10.6938 -4.7924 38 1 2.8781 -8.5557 1.9936 39 1 -0.0476 -8.8154 0.8944 40 1 0.5860 -9.5315 2.4715 41 1 1.1705 -7.2037 3.2939 42 1 0.5374 -6.4869 1.7169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109763269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:26 Heat of formation + Delta-G solvation = -9.933450 kcal Electronic energy + Delta-G solvation = -25850.634441 eV Core-core repulsion = 21872.586475 eV Total energy + Delta-G solvation = -3978.047966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.21952 -40.57270 -39.82636 -37.44515 -36.13890 -33.89299 -32.89504 -32.44371 -30.80373 -29.31641 -27.97048 -25.50440 -24.42806 -23.70646 -22.41529 -22.18896 -21.01085 -20.36958 -18.46555 -18.09854 -17.72640 -16.73674 -16.43508 -16.30705 -16.14010 -15.99831 -15.50269 -15.37822 -14.81820 -14.77085 -14.56144 -13.95736 -13.84145 -13.70614 -13.44203 -13.22757 -13.06143 -12.58222 -12.55753 -12.21838 -12.10373 -11.76024 -11.30707 -11.05883 -11.04479 -10.79277 -10.72795 -10.43855 -10.30969 -10.00963 -9.97151 -9.83898 -9.45203 -9.07790 -8.96694 -8.27583 -8.15383 -6.52155 -6.23317 -3.94027 0.75704 0.97813 2.47474 2.89213 2.98128 3.22914 3.25608 3.28605 3.39420 3.55029 3.64010 3.88911 4.19017 4.22014 4.30038 4.52173 4.66350 4.78517 4.80589 4.88419 4.96352 5.02336 5.07590 5.11615 5.12166 5.23825 5.38107 5.46454 5.53959 5.62883 5.69768 5.81331 5.84424 5.94439 6.07572 6.10605 6.13713 6.39909 6.50825 6.57042 7.09037 7.57244 7.59069 7.62126 8.33466 8.51089 9.22245 10.84013 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010138 B = 0.002657 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.280140 B =10535.495091 C =12860.431419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.155 4.155 11 C 0.537 3.463 12 O -0.512 6.512 13 N -0.733 5.733 14 C 0.168 3.832 15 H 0.097 0.903 16 C 0.124 3.876 17 N -0.717 5.717 18 C 0.442 3.558 19 C -0.252 4.252 20 C -0.007 4.007 21 C -0.260 4.260 22 C 0.358 3.642 23 F -0.113 7.113 24 N -0.576 5.576 25 C -0.174 4.174 26 C -0.171 4.171 27 C -0.174 4.174 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.260 -24.974 -0.716 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.306 4.306 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.388 5.388 14 C 0.062 3.938 15 H 0.115 0.885 16 C -0.001 4.001 17 N -0.350 5.350 18 C 0.205 3.795 19 C -0.277 4.277 20 C -0.032 4.032 21 C -0.284 4.284 22 C 0.204 3.796 23 F -0.092 7.092 24 N -0.300 5.300 25 C -0.193 4.193 26 C -0.209 4.209 27 C -0.211 4.211 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.233 0.767 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.250 0.750 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.648 -24.509 -0.896 26.355 hybrid contribution 2.791 1.093 -0.046 2.998 sum 12.439 -23.416 -0.942 26.532 Atomic orbital electron populations 1.70004 1.05941 1.27593 1.46763 1.24985 0.95028 0.99022 0.94488 0.86233 0.79258 0.81244 0.78828 1.19911 1.20792 1.19940 1.22822 0.94867 0.91675 1.59114 0.91004 1.85349 1.04691 0.96283 1.96731 1.23545 1.06723 0.95328 1.04954 1.20302 0.86534 0.86224 0.74523 1.90640 1.15314 1.85401 1.47270 1.46105 1.10074 1.04843 1.77755 1.20635 0.97376 0.81183 0.94599 0.88478 1.21739 0.98093 0.98091 0.82149 1.44616 1.43004 1.30527 1.16822 1.17797 0.87327 0.88207 0.86168 1.21430 1.04194 0.98556 1.03560 1.21175 0.92748 0.97515 0.91767 1.21479 1.07690 0.99316 0.99927 1.17670 0.91288 0.89633 0.81030 1.91634 1.90425 1.87835 1.39312 1.66236 1.19784 1.36577 1.07358 1.22526 0.93844 1.06697 0.96279 1.22944 0.96916 0.97374 1.03649 1.23347 1.01613 0.96253 0.99888 0.92112 0.89214 0.89253 0.76667 0.89934 0.90861 0.75045 0.84276 0.83901 0.83959 0.87750 0.88641 0.89004 0.89293 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.54 9.03 7.18 -10.98 -0.08 8.95 16 12 O -0.51 -10.31 12.89 5.56 0.07 -10.24 16 13 N -0.73 -8.44 4.50 -53.80 -0.24 -8.68 16 14 C 0.17 1.61 2.43 -67.93 -0.17 1.44 16 15 H 0.10 1.15 7.34 -51.93 -0.38 0.77 16 16 C 0.12 0.84 4.43 -4.04 -0.02 0.83 16 17 N -0.72 -6.54 5.56 -60.43 -0.34 -6.87 16 18 C 0.44 4.46 7.65 -155.01 -1.19 3.28 16 19 C -0.25 -1.85 9.32 -39.22 -0.37 -2.22 16 20 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 21 C -0.26 -2.06 10.08 -39.34 -0.40 -2.46 16 22 C 0.36 4.00 8.40 -17.37 -0.15 3.85 16 23 F -0.11 -1.34 17.29 2.25 0.04 -1.30 16 24 N -0.58 -7.21 10.40 -12.78 -0.13 -7.34 16 25 C -0.17 -1.62 5.36 -90.62 -0.49 -2.10 16 26 C -0.17 -1.65 10.18 -26.70 -0.27 -1.93 16 27 C -0.17 -2.14 9.74 -26.70 -0.26 -2.40 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 31 H 0.40 3.80 8.60 -40.82 -0.35 3.45 16 32 H 0.08 0.46 7.93 -51.93 -0.41 0.04 16 33 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 34 H 0.41 4.43 8.26 -40.82 -0.34 4.09 16 35 H 0.14 0.69 6.70 -52.48 -0.35 0.34 16 36 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.12 2.03 5.02 -51.93 -0.26 1.77 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -33.97 374.12 -10.24 -44.22 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.42 Total: 6.03 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -3.35 Total: -8.82 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.02 Total: -48.18 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.97 -10.24 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109763269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.282 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds