Wall clock time and date at job start Tue Mar 31 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47112 * 240.00124 * 3 2 1 5 5 H 1.48504 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47109 * 119.99779 * 3 2 1 7 7 C 1.38801 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00087 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00442 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99936 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64376 * 4.97303 * 13 11 10 15 15 C 1.54908 * 104.83001 * 204.09085 * 14 13 11 16 16 C 1.55404 * 101.66912 * 323.07979 * 15 14 13 17 17 C 1.47013 * 125.64794 * 184.93331 * 13 11 10 18 18 H 1.08996 * 109.88537 * 59.40401 * 17 13 11 19 19 C 1.52994 * 109.88432 * 298.39194 * 17 13 11 20 20 N 1.46499 * 109.47672 * 175.29864 * 19 17 13 21 21 C 1.38993 * 120.00554 * 175.06997 * 20 19 17 22 22 C 1.39072 * 119.68726 * 359.97438 * 21 20 19 23 23 C 1.38374 * 119.15637 * 180.02562 * 22 21 20 24 24 C 1.38762 * 118.53822 * 359.74766 * 23 22 21 25 25 C 1.38377 * 119.29781 * 0.52037 * 24 23 22 26 26 F 1.35097 * 119.60082 * 179.74890 * 25 24 23 27 27 N 1.32138 * 120.79645 * 359.46909 * 25 24 23 28 28 H 0.97003 * 120.00446 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47057 * 59.99666 * 10 9 7 30 30 H 1.09002 * 109.46669 * 299.99674 * 10 9 7 31 31 H 1.08992 * 110.37361 * 322.93148 * 14 13 11 32 32 H 1.09004 * 110.36381 * 85.26008 * 14 13 11 33 33 H 1.09003 * 111.00272 * 81.06922 * 15 14 13 34 34 H 1.09005 * 111.00582 * 204.91681 * 15 14 13 35 35 H 1.08998 * 110.69269 * 277.04822 * 16 15 14 36 36 H 1.08991 * 110.85759 * 153.69734 * 16 15 14 37 37 H 1.09000 * 109.47271 * 55.29983 * 19 17 13 38 38 H 1.09003 * 109.47538 * 295.30494 * 19 17 13 39 39 H 0.97008 * 119.99337 * 355.07212 * 20 19 17 40 40 H 1.08001 * 120.42303 * 359.97438 * 22 21 20 41 41 H 1.08002 * 120.73164 * 180.02562 * 23 22 21 42 42 H 1.07992 * 120.35118 * 180.24473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3432 0.0008 14 6 4.3118 -6.2476 0.1036 15 6 4.8405 -7.5504 -0.5466 16 6 3.7750 -8.5850 -0.0889 17 6 2.4700 -7.7612 -0.1014 18 1 1.9303 -7.9360 -1.0321 19 6 1.5944 -8.1554 1.0896 20 7 1.1346 -9.5363 0.9219 21 6 0.4053 -10.1535 1.9314 22 6 0.1162 -9.4543 3.0983 23 6 -0.6102 -10.0795 4.0964 24 6 -1.0294 -11.3864 3.8918 25 6 -0.7019 -12.0251 2.7087 26 9 -1.1026 -13.2992 2.5052 27 7 -0.0068 -11.4022 1.7735 28 1 -0.4851 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1244 -3.7313 -0.8895 31 1 4.6745 -5.3769 -0.4425 32 1 4.6161 -6.1948 1.1489 33 1 4.8581 -7.4655 -1.6332 34 1 5.8268 -7.8075 -0.1604 35 1 3.9944 -8.9446 0.9164 36 1 3.7135 -9.4156 -0.7918 37 1 0.7329 -7.4898 1.1434 38 1 2.1739 -8.0746 2.0092 39 1 1.3393 -10.0199 0.1063 40 1 0.4549 -8.4365 3.2242 41 1 -0.8494 -9.5603 5.0127 42 1 -1.6013 -11.9010 4.6496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110531280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:15 Heat of formation + Delta-G solvation = -31.211761 kcal Electronic energy + Delta-G solvation = -25960.871796 eV Core-core repulsion = 21981.901133 eV Total energy + Delta-G solvation = -3978.970663 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.17659 -40.55126 -39.98366 -37.50860 -35.86841 -32.86360 -32.47478 -31.96906 -31.02519 -29.26322 -28.38304 -25.76813 -25.52081 -23.79293 -23.13338 -22.44130 -21.26512 -19.37624 -18.29505 -17.92725 -17.61017 -16.97786 -16.41769 -16.25836 -16.20790 -15.68983 -15.03127 -15.02324 -14.84441 -14.79245 -14.40956 -13.95610 -13.74575 -13.65071 -13.35088 -13.34819 -13.04828 -12.75821 -12.59926 -12.47878 -12.21864 -11.84757 -11.53333 -11.37609 -11.09532 -11.08523 -11.06841 -10.80967 -10.53060 -9.95461 -9.88223 -9.84928 -9.49244 -9.10304 -8.71423 -8.30082 -8.01227 -6.56034 -6.25967 -3.97394 0.87086 1.08909 2.41860 2.87912 2.96182 3.20157 3.22545 3.26018 3.50207 3.52514 3.75231 4.13655 4.18735 4.24072 4.40796 4.48826 4.68008 4.78032 4.92241 4.94678 4.98182 5.01709 5.05579 5.09223 5.30607 5.40752 5.48983 5.52092 5.53357 5.57409 5.60750 5.69493 5.69756 5.83859 5.89413 5.97431 6.06017 6.20450 6.33112 6.65194 7.17613 7.50468 7.54993 7.69854 8.30379 8.40851 9.19198 10.81349 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002292 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.659749 B =12213.680766 C =13525.559170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.510 6.510 13 N -0.620 5.620 14 C 0.100 3.900 15 C -0.132 4.132 16 C -0.129 4.129 17 C 0.131 3.869 18 H 0.082 0.918 19 C 0.113 3.887 20 N -0.713 5.713 21 C 0.443 3.557 22 C -0.246 4.246 23 C -0.006 4.006 24 C -0.259 4.259 25 C 0.353 3.647 26 F -0.116 7.116 27 N -0.580 5.580 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.405 0.595 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.084 -21.304 5.102 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.298 4.298 11 C 0.338 3.662 12 O -0.383 6.383 13 N -0.358 5.358 14 C -0.023 4.023 15 C -0.171 4.171 16 C -0.167 4.167 17 C 0.027 3.973 18 H 0.100 0.900 19 C -0.013 4.013 20 N -0.344 5.344 21 C 0.206 3.794 22 C -0.271 4.271 23 C -0.031 4.031 24 C -0.283 4.283 25 C 0.199 3.801 26 F -0.095 7.095 27 N -0.304 5.304 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.241 0.759 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.314 -21.650 4.367 22.971 hybrid contribution 1.810 1.238 0.301 2.213 sum 8.124 -20.412 4.667 22.460 Atomic orbital electron populations 1.70003 1.05954 1.27642 1.46630 1.24993 0.95034 0.99039 0.94476 0.86222 0.79246 0.81214 0.78813 1.19928 1.20788 1.19910 1.22804 0.94844 0.91566 1.59248 0.90961 1.85409 1.04754 0.96361 1.96736 1.23517 1.06616 0.94750 1.04883 1.20128 0.85696 0.85479 0.74911 1.90712 1.14897 1.84987 1.47743 1.48524 1.07201 1.04579 1.75511 1.22337 0.79916 0.99056 1.01000 1.22827 0.98699 0.94118 1.01412 1.22798 0.93405 0.97667 1.02799 1.21559 0.95727 0.82063 0.97992 0.90039 1.21939 0.99558 0.81257 0.98499 1.44411 1.57542 1.13970 1.18520 1.17744 0.87824 0.86300 0.87530 1.21522 1.07996 1.02716 0.94849 1.21215 0.91196 0.92710 0.98023 1.21464 1.10290 0.97592 0.98972 1.17628 0.92540 0.79886 0.90056 1.91613 1.87531 1.34999 1.95328 1.66188 1.19402 1.10889 1.33943 0.92074 0.89229 0.89183 0.89939 0.91190 0.90364 0.89694 0.90207 0.89905 0.89399 0.91279 0.75891 0.84119 0.83776 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.84 5.09 36.01 0.18 -2.65 16 11 C 0.55 9.67 7.68 -10.98 -0.08 9.59 16 12 O -0.51 -10.83 14.66 5.56 0.08 -10.75 16 13 N -0.62 -7.81 3.06 -163.03 -0.50 -8.31 16 14 C 0.10 0.91 6.74 -2.53 -0.02 0.89 16 15 C -0.13 -0.87 7.09 -24.45 -0.17 -1.05 16 16 C -0.13 -0.89 6.23 -24.76 -0.15 -1.04 16 17 C 0.13 1.35 2.94 -66.96 -0.20 1.15 16 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 19 C 0.11 1.21 4.33 -4.05 -0.02 1.20 16 20 N -0.71 -7.34 5.53 -60.43 -0.33 -7.67 16 21 C 0.44 5.20 7.65 -155.02 -1.19 4.01 16 22 C -0.25 -2.57 9.31 -39.22 -0.36 -2.94 16 23 C -0.01 -0.05 10.16 -39.34 -0.40 -0.45 16 24 C -0.26 -2.42 10.08 -39.34 -0.40 -2.82 16 25 C 0.35 4.15 8.40 -17.37 -0.15 4.00 16 26 F -0.12 -1.36 17.29 2.25 0.04 -1.32 16 27 N -0.58 -7.46 10.40 -12.78 -0.13 -7.59 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.09 1.62 7.95 -51.91 -0.41 1.21 16 31 H 0.08 0.75 7.47 -51.93 -0.39 0.36 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.53 7.77 -51.93 -0.40 0.12 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 1.24 6.54 -51.93 -0.34 0.90 16 38 H 0.07 0.68 7.55 -51.93 -0.39 0.29 16 39 H 0.41 3.75 8.52 -40.82 -0.35 3.41 16 40 H 0.14 1.39 6.69 -52.49 -0.35 1.03 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -34.00 369.89 -10.09 -44.09 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.56 Total: 1.52 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.75 Total: -2.73 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.23 Total: -48.56 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.00 -10.09 -44.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110531280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.877 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds