Wall clock time and date at job start Tue Mar 31 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86795 * 119.99896 * 2 1 4 4 H 1.48499 * 109.47112 * 240.00124 * 3 2 1 5 5 H 1.48504 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47109 * 119.99779 * 3 2 1 7 7 C 1.38801 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00087 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00442 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99936 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64376 * 4.97303 * 13 11 10 15 15 C 1.54908 * 104.83001 * 204.09085 * 14 13 11 16 16 C 1.55404 * 101.66912 * 323.07979 * 15 14 13 17 17 C 1.47013 * 125.64794 * 184.93331 * 13 11 10 18 18 H 1.08996 * 109.88537 * 59.40401 * 17 13 11 19 19 C 1.52994 * 109.88432 * 298.39194 * 17 13 11 20 20 N 1.46499 * 109.47672 * 175.29864 * 19 17 13 21 21 C 1.38993 * 120.00554 * 175.06997 * 20 19 17 22 22 C 1.39072 * 119.68726 * 359.97438 * 21 20 19 23 23 C 1.38374 * 119.15637 * 180.02562 * 22 21 20 24 24 C 1.38762 * 118.53822 * 359.74766 * 23 22 21 25 25 C 1.38377 * 119.29781 * 0.52037 * 24 23 22 26 26 F 1.35097 * 119.60082 * 179.74890 * 25 24 23 27 27 N 1.32138 * 120.79645 * 359.46909 * 25 24 23 28 28 H 0.97003 * 120.00446 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47057 * 59.99666 * 10 9 7 30 30 H 1.09002 * 109.46669 * 299.99674 * 10 9 7 31 31 H 1.08992 * 110.37361 * 322.93148 * 14 13 11 32 32 H 1.09004 * 110.36381 * 85.26008 * 14 13 11 33 33 H 1.09003 * 111.00272 * 81.06922 * 15 14 13 34 34 H 1.09005 * 111.00582 * 204.91681 * 15 14 13 35 35 H 1.08998 * 110.69269 * 277.04822 * 16 15 14 36 36 H 1.08991 * 110.85759 * 153.69734 * 16 15 14 37 37 H 1.09000 * 109.47271 * 55.29983 * 19 17 13 38 38 H 1.09003 * 109.47538 * 295.30494 * 19 17 13 39 39 H 0.97008 * 119.99337 * 355.07212 * 20 19 17 40 40 H 1.08001 * 120.42303 * 359.97438 * 22 21 20 41 41 H 1.08002 * 120.73164 * 180.02562 * 23 22 21 42 42 H 1.07992 * 120.35118 * 180.24473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3432 0.0008 14 6 4.3118 -6.2476 0.1036 15 6 4.8405 -7.5504 -0.5466 16 6 3.7750 -8.5850 -0.0889 17 6 2.4700 -7.7612 -0.1014 18 1 1.9303 -7.9360 -1.0321 19 6 1.5944 -8.1554 1.0896 20 7 1.1346 -9.5363 0.9219 21 6 0.4053 -10.1535 1.9314 22 6 0.1162 -9.4543 3.0983 23 6 -0.6102 -10.0795 4.0964 24 6 -1.0294 -11.3864 3.8918 25 6 -0.7019 -12.0251 2.7087 26 9 -1.1026 -13.2992 2.5052 27 7 -0.0068 -11.4022 1.7735 28 1 -0.4851 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1244 -3.7313 -0.8895 31 1 4.6745 -5.3769 -0.4425 32 1 4.6161 -6.1948 1.1489 33 1 4.8581 -7.4655 -1.6332 34 1 5.8268 -7.8075 -0.1604 35 1 3.9944 -8.9446 0.9164 36 1 3.7135 -9.4156 -0.7918 37 1 0.7329 -7.4898 1.1434 38 1 2.1739 -8.0746 2.0092 39 1 1.3393 -10.0199 0.1063 40 1 0.4549 -8.4365 3.2242 41 1 -0.8494 -9.5603 5.0127 42 1 -1.6013 -11.9010 4.6496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110531280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:14 Heat of formation + Delta-G solvation = -53.223720 kcal Electronic energy + Delta-G solvation = -25961.826307 eV Core-core repulsion = 21981.901133 eV Total energy + Delta-G solvation = -3979.925173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.04566 -41.48360 -40.95511 -38.67195 -36.71808 -34.58551 -33.68101 -33.03483 -31.82221 -30.44981 -29.37225 -27.66029 -26.56197 -24.62167 -24.05448 -23.27403 -22.02923 -20.54021 -19.64636 -19.08572 -18.68354 -18.12883 -17.42344 -17.13489 -17.02785 -16.87822 -16.56696 -16.35230 -16.14167 -15.68737 -15.63960 -15.31167 -14.68822 -14.55923 -14.37111 -14.13715 -14.07213 -14.01613 -13.65841 -13.53445 -13.21353 -13.14139 -12.89611 -12.85047 -12.63776 -12.14940 -12.08146 -11.74351 -11.65770 -11.33939 -11.12790 -10.94695 -10.80530 -10.66622 -10.28042 -9.78143 -8.84015 -8.67495 -8.34595 -6.12938 0.03845 0.31497 1.20867 1.42015 1.44036 1.50983 1.54105 1.72928 2.18983 2.27730 2.67747 2.91043 2.99619 3.22984 3.47177 3.52637 3.69248 3.76237 3.88664 3.91937 4.07365 4.19144 4.21949 4.25650 4.27916 4.38959 4.46828 4.58758 4.72098 4.72914 4.82103 4.92351 4.93015 4.98940 5.11223 5.21435 5.30177 5.36467 5.41557 5.48161 5.83678 6.19455 6.34496 6.36642 6.86784 7.06645 7.09284 8.74246 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002292 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.659749 B =12213.680766 C =13525.559170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.120 4.120 11 C 0.548 3.452 12 O -0.558 6.558 13 N -0.610 5.610 14 C 0.087 3.913 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.127 3.873 18 H 0.070 0.930 19 C 0.126 3.874 20 N -0.708 5.708 21 C 0.426 3.574 22 C -0.255 4.255 23 C 0.000 4.000 24 C -0.248 4.248 25 C 0.329 3.671 26 F -0.122 7.122 27 N -0.605 5.605 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.143 0.857 41 H 0.178 0.822 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.922 -21.877 6.031 25.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.271 4.271 11 C 0.336 3.664 12 O -0.435 6.435 13 N -0.345 5.345 14 C -0.034 4.034 15 C -0.159 4.159 16 C -0.155 4.155 17 C 0.023 3.977 18 H 0.088 0.912 19 C 0.000 4.000 20 N -0.341 5.341 21 C 0.189 3.811 22 C -0.281 4.281 23 C -0.025 4.025 24 C -0.272 4.272 25 C 0.176 3.824 26 F -0.101 7.101 27 N -0.330 5.330 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.161 0.839 41 H 0.195 0.805 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.207 -22.276 5.294 24.679 hybrid contribution 0.950 1.272 0.036 1.588 sum 10.157 -21.005 5.330 23.933 Atomic orbital electron populations 1.70176 1.07979 1.28674 1.47956 1.26124 0.95949 1.03315 0.93750 0.85018 0.77818 0.75718 0.79547 1.18675 1.20532 1.18520 1.23153 0.95330 0.91913 1.58929 0.89860 1.85587 1.10426 0.99215 1.97037 1.23311 1.03431 0.93966 1.06415 1.19797 0.85497 0.85908 0.75216 1.90699 1.16921 1.85572 1.50339 1.48428 1.08475 1.04520 1.73097 1.22724 0.77313 1.00862 1.02532 1.22833 0.99613 0.92030 1.01424 1.22791 0.91052 0.97565 1.04058 1.21748 0.97694 0.81076 0.97157 0.91231 1.21693 0.98204 0.80795 0.99269 1.44303 1.57613 1.13564 1.18590 1.17961 0.88465 0.86329 0.88299 1.21718 1.08401 1.02894 0.95040 1.21631 0.89791 0.92487 0.98629 1.21785 1.09343 0.97650 0.98417 1.17986 0.93442 0.80018 0.90993 1.91593 1.87664 1.35358 1.95454 1.66104 1.20327 1.11560 1.35003 0.92008 0.87398 0.87632 0.89729 0.89519 0.90223 0.86852 0.89161 0.88127 0.93247 0.90132 0.75439 0.83912 0.80481 0.81269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.45 13.22 21.65 0.29 -55.16 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 42.78 29.55 68.60 2.03 44.81 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.55 -30.54 9.50 67.95 0.65 -29.89 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.16 20.57 -56.49 -1.16 -9.33 16 10 C -0.12 -4.62 5.09 71.24 0.36 -4.26 16 11 C 0.55 19.53 7.68 87.66 0.67 20.20 16 12 O -0.56 -24.86 14.66 -3.02 -0.04 -24.90 16 13 N -0.61 -14.73 3.06 -788.08 -2.42 -17.14 16 14 C 0.09 1.34 6.74 86.85 0.59 1.92 16 15 C -0.12 -1.14 7.09 32.07 0.23 -0.91 16 16 C -0.12 -1.26 6.23 31.87 0.20 -1.06 16 17 C 0.13 2.50 2.94 45.34 0.13 2.63 16 18 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 19 C 0.13 2.71 4.33 86.38 0.37 3.08 16 20 N -0.71 -14.58 5.53 -345.11 -1.91 -16.48 16 21 C 0.43 9.98 7.65 133.04 1.02 11.00 16 22 C -0.26 -5.20 9.31 22.50 0.21 -4.99 16 23 C 0.00 0.00 10.16 22.43 0.23 0.22 16 24 C -0.25 -4.21 10.08 22.43 0.23 -3.99 16 25 C 0.33 7.59 8.40 84.68 0.71 8.31 16 26 F -0.12 -2.84 17.29 44.97 0.78 -2.06 16 27 N -0.60 -15.61 10.40 -194.33 -2.02 -17.63 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 30 H 0.11 3.70 7.95 -2.39 -0.02 3.68 16 31 H 0.08 1.30 7.47 -2.39 -0.02 1.28 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.09 0.86 7.77 -2.39 -0.02 0.84 16 36 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 1.48 6.54 -2.39 -0.02 1.46 16 38 H 0.08 1.52 7.55 -2.39 -0.02 1.51 16 39 H 0.41 7.52 8.52 -92.70 -0.79 6.73 16 40 H 0.14 2.78 6.69 -2.91 -0.02 2.76 16 41 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -78.23 369.89 1.86 -76.37 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.27 Total: 18.05 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.06 Total: 3.49 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -6.06 Total: -106.42 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.04 Total: -24.90 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -78.23 1.86 -76.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110531280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.147 kcal (2) G-P(sol) polarization free energy of solvation -78.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds