Wall clock time and date at job start Tue Mar 31 2020 22:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 110.37215 * 2 1 4 4 C 1.34774 * 119.99695 * 299.27368 * 3 2 1 5 5 O 1.21282 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99560 * 179.97438 * 4 3 2 7 7 S 1.81005 * 109.47019 * 179.97438 * 6 4 3 8 8 C 1.76197 * 100.00054 * 179.97438 * 7 6 4 9 9 H 1.08001 * 119.99816 * 359.97438 * 8 7 6 10 10 C 1.38796 * 119.99916 * 180.02562 * 8 7 6 11 11 N 1.31635 * 119.99810 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00201 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46858 * 90.00708 * 12 10 8 14 14 H 1.48500 * 109.47517 * 210.00563 * 12 10 8 15 15 H 1.48502 * 109.47300 * 330.00699 * 12 10 8 16 16 C 1.54261 * 110.32649 * 237.81691 * 2 1 3 17 17 C 1.54383 * 105.06074 * 241.10805 * 16 2 1 18 18 N 1.48555 * 104.59356 * 336.14828 * 17 16 2 19 19 C 1.38997 * 111.00026 * 159.04175 * 18 17 16 20 20 C 1.39075 * 119.68703 * 59.87264 * 19 18 17 21 21 C 1.38372 * 119.15371 * 179.97438 * 20 19 18 22 22 C 1.38763 * 118.53664 * 359.97438 * 21 20 19 23 23 C 1.38366 * 119.30661 * 0.02562 * 22 21 20 24 24 F 1.35090 * 119.60570 * 180.02562 * 23 22 21 25 25 N 1.32141 * 120.78989 * 0.02562 * 23 22 21 26 26 C 1.48560 * 104.22638 * 39.48156 * 18 17 16 27 27 H 1.08996 * 109.47576 * 180.72401 * 1 2 3 28 28 H 1.08998 * 109.47228 * 300.73082 * 1 2 3 29 29 H 1.09010 * 109.46993 * 60.72786 * 1 2 3 30 30 H 0.96996 * 119.99798 * 119.26388 * 3 2 1 31 31 H 1.09000 * 109.47262 * 299.99251 * 6 4 3 32 32 H 1.08997 * 109.47432 * 59.99893 * 6 4 3 33 33 H 0.97007 * 119.99912 * 179.97438 * 11 10 8 34 34 H 1.08992 * 110.32760 * 122.20965 * 16 2 1 35 35 H 1.09007 * 110.32142 * 359.97438 * 16 2 1 36 36 H 1.08999 * 110.41121 * 217.36334 * 17 16 2 37 37 H 1.09000 * 110.51118 * 94.97352 * 17 16 2 38 38 H 1.07995 * 120.42144 * 359.69766 * 20 19 18 39 39 H 1.08002 * 120.73373 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.34794 * 180.02562 * 22 21 20 41 41 H 1.08996 * 110.40664 * 79.29738 * 26 18 17 42 42 H 1.08997 * 110.41187 * 201.73868 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0400 1.3734 0.0000 4 6 1.7395 2.2037 -1.0182 5 8 1.0473 1.8139 -1.9346 6 6 2.2636 3.6166 -1.0178 7 16 1.6922 4.4725 -2.5069 8 6 2.4287 6.0529 -2.2532 9 1 3.0229 6.2362 -1.3701 10 6 2.2444 7.0625 -3.1876 11 7 2.7943 8.2433 -2.9978 12 14 1.2161 6.7456 -4.7145 13 1 -0.2023 7.0855 -4.4353 14 1 1.7160 7.5868 -5.8315 15 1 1.3169 5.3125 -5.0907 16 6 2.0658 -0.7705 -1.2243 17 6 2.8806 -1.9423 -0.6357 18 7 3.2692 -1.4829 0.7226 19 6 3.5884 -2.5605 1.5405 20 6 4.6273 -3.4130 1.1823 21 6 4.9360 -4.4820 2.0049 22 6 4.1934 -4.6635 3.1629 23 6 3.1729 -3.7772 3.4590 24 9 2.4464 -3.9479 4.5850 25 7 2.9005 -2.7658 2.6534 26 6 2.0661 -0.7711 1.2253 27 1 -0.3634 -1.0275 0.0130 28 1 -0.3633 0.5251 0.8833 29 1 -0.3633 0.5025 -0.8965 30 1 2.5937 1.6850 0.7328 31 1 1.8974 4.1399 -0.1346 32 1 3.3534 3.5999 -1.0045 33 1 2.6658 8.9488 -3.6511 34 1 2.7082 -0.1269 -1.8252 35 1 1.2388 -1.1491 -1.8250 36 1 3.7670 -2.1310 -1.2413 37 1 2.2664 -2.8405 -0.5720 38 1 5.1829 -3.2455 0.2716 39 1 5.7374 -5.1602 1.7512 40 1 4.4096 -5.4880 3.8263 41 1 1.3228 -1.4848 1.5804 42 1 2.3393 -0.0779 2.0209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110722691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:25 Heat of formation + Delta-G solvation = -20.150199 kcal Electronic energy + Delta-G solvation = -26357.838120 eV Core-core repulsion = 22379.347122 eV Total energy + Delta-G solvation = -3978.490998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.41041 -41.34235 -39.91655 -38.14322 -34.88261 -33.17734 -32.43225 -32.16628 -30.36820 -29.52454 -28.59715 -26.43416 -25.60136 -23.98097 -23.63665 -21.90500 -21.16541 -19.50505 -18.43855 -17.88671 -17.67117 -16.82186 -16.58961 -16.45628 -16.33037 -15.97203 -15.13804 -15.03932 -14.92496 -14.49623 -14.18398 -13.87290 -13.74322 -13.42248 -13.26096 -13.21313 -12.96650 -12.79868 -12.72069 -12.43595 -12.32707 -12.07092 -11.70576 -11.25903 -11.20001 -11.03900 -10.99697 -10.61641 -10.57798 -10.23352 -10.09216 -9.84861 -9.37267 -9.01673 -8.96413 -8.67734 -8.49214 -6.90444 -6.28104 -3.99540 0.44535 0.63924 2.76564 2.77966 2.98356 3.07191 3.29852 3.34089 3.44983 3.50271 3.66332 4.00998 4.06986 4.33479 4.42344 4.44239 4.55525 4.63783 4.75702 4.77913 4.84857 5.07542 5.10969 5.16153 5.20102 5.28386 5.32467 5.40269 5.47615 5.57445 5.58946 5.65003 5.77276 5.79680 5.94554 5.99504 6.02584 6.06482 6.26996 6.59288 6.66000 7.19892 7.66466 7.95021 8.42970 8.52618 9.18037 10.81177 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.002121 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.744200 B =13198.701457 C =13243.279198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 N -0.723 5.723 4 C 0.534 3.466 5 O -0.516 6.516 6 C -0.125 4.125 7 S -0.141 6.141 8 C -0.521 4.521 9 H 0.088 0.912 10 C 0.095 3.905 11 N -0.881 5.881 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.235 1.235 16 C -0.123 4.123 17 C 0.042 3.958 18 N -0.452 5.452 19 C 0.342 3.658 20 C -0.192 4.192 21 C -0.027 4.027 22 C -0.223 4.223 23 C 0.333 3.667 24 F -0.112 7.112 25 N -0.550 5.550 26 C 0.045 3.955 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.400 0.600 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.270 0.730 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -28.678 11.286 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 N -0.378 5.378 4 C 0.320 3.680 5 O -0.391 6.391 6 C -0.275 4.275 7 S 0.085 5.915 8 C -0.669 4.669 9 H 0.106 0.894 10 C -0.114 4.114 11 N -0.517 5.517 12 Si 0.682 3.318 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.159 1.159 16 C -0.162 4.162 17 C -0.083 4.083 18 N -0.169 5.169 19 C 0.110 3.890 20 C -0.214 4.214 21 C -0.053 4.053 22 C -0.246 4.246 23 C 0.179 3.821 24 F -0.091 7.091 25 N -0.270 5.270 26 C -0.082 4.082 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.235 0.765 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.695 -28.200 9.898 29.935 hybrid contribution 0.754 -0.126 1.066 1.312 sum 2.449 -28.326 10.964 30.473 Atomic orbital electron populations 1.22206 0.93116 1.02194 1.04221 1.20951 0.94297 0.82085 0.94063 1.46116 1.54814 1.11476 1.25392 1.20214 0.79697 0.86657 0.81399 1.90663 1.36828 1.76604 1.34989 1.23291 1.04544 0.94546 1.05153 1.84733 1.69860 1.11735 1.25145 1.22325 1.37339 0.95020 1.12166 0.89419 1.24724 0.94811 0.93992 0.97864 1.69946 1.42959 1.02676 1.36151 0.86724 0.81072 0.81180 0.82791 1.19247 1.19997 1.15927 1.22763 1.00135 0.95869 0.97442 1.23328 1.00195 0.97811 0.87012 1.62556 1.34293 1.17163 1.02905 1.19671 0.91043 0.88900 0.89411 1.21657 0.99851 0.96613 1.03326 1.21363 0.96812 0.95587 0.91513 1.21709 0.98705 1.02911 1.01236 1.17866 0.89351 0.91523 0.83397 1.91639 1.76517 1.94126 1.46867 1.66813 1.30932 1.22066 1.07173 1.23358 0.90584 0.97703 0.96552 0.92041 0.92205 0.89563 0.76469 0.88612 0.88534 0.91967 0.89364 0.89523 0.88739 0.92402 0.83599 0.83395 0.83547 0.89704 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.17 37.16 0.30 -1.50 16 2 C 0.17 1.91 1.01 -130.44 -0.13 1.78 16 3 N -0.72 -9.05 5.10 -46.33 -0.24 -9.29 16 4 C 0.53 8.99 7.01 -10.99 -0.08 8.92 16 5 O -0.52 -10.18 13.16 5.56 0.07 -10.11 16 6 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 7 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 8 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 9 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 10 C 0.09 2.77 5.50 -17.43 -0.10 2.67 16 11 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 12 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 16 C -0.12 -1.32 5.49 -25.35 -0.14 -1.45 16 17 C 0.04 0.35 5.89 -2.18 -0.01 0.34 16 18 N -0.45 -4.30 5.41 -168.80 -0.91 -5.22 16 19 C 0.34 3.21 6.23 -155.01 -0.97 2.24 16 20 C -0.19 -1.33 9.40 -39.22 -0.37 -1.69 16 21 C -0.03 -0.14 10.16 -39.34 -0.40 -0.54 16 22 C -0.22 -1.43 10.08 -39.34 -0.40 -1.83 16 23 C 0.33 3.11 8.40 -17.37 -0.15 2.96 16 24 F -0.11 -1.11 17.29 2.25 0.04 -1.08 16 25 N -0.55 -5.82 8.50 -12.78 -0.11 -5.92 16 26 C 0.05 0.44 5.06 -2.18 -0.01 0.43 16 27 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.22 6.32 -51.92 -0.33 0.89 16 30 H 0.40 4.22 8.26 -40.82 -0.34 3.88 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 32 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.09 1.14 7.31 -51.93 -0.38 0.76 16 35 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.09 0.66 7.99 -51.93 -0.41 0.25 16 37 H 0.06 0.44 7.97 -51.93 -0.41 0.02 16 38 H 0.15 0.77 7.85 -52.49 -0.41 0.36 16 39 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 16 40 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.08 0.86 6.95 -51.93 -0.36 0.50 16 42 H 0.09 0.93 7.75 -51.93 -0.40 0.53 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -33.81 362.38 -9.09 -42.89 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.56 Total: 2.08 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.91 Total: -4.48 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.48 Total: -46.26 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.81 -9.09 -42.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.745 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds