Wall clock time and date at job start Tue Mar 31 2020 22:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 110.37215 * 2 1 4 4 C 1.34774 * 119.99695 * 299.27368 * 3 2 1 5 5 O 1.21282 * 120.00232 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99560 * 179.97438 * 4 3 2 7 7 S 1.81005 * 109.47019 * 179.97438 * 6 4 3 8 8 C 1.76197 * 100.00054 * 179.97438 * 7 6 4 9 9 H 1.08001 * 119.99816 * 359.97438 * 8 7 6 10 10 C 1.38796 * 119.99916 * 180.02562 * 8 7 6 11 11 N 1.31635 * 119.99810 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00201 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46858 * 90.00708 * 12 10 8 14 14 H 1.48500 * 109.47517 * 210.00563 * 12 10 8 15 15 H 1.48502 * 109.47300 * 330.00699 * 12 10 8 16 16 C 1.54261 * 110.32649 * 237.81691 * 2 1 3 17 17 C 1.54383 * 105.06074 * 241.10805 * 16 2 1 18 18 N 1.48555 * 104.59356 * 336.14828 * 17 16 2 19 19 C 1.38997 * 111.00026 * 159.04175 * 18 17 16 20 20 C 1.39075 * 119.68703 * 59.87264 * 19 18 17 21 21 C 1.38372 * 119.15371 * 179.97438 * 20 19 18 22 22 C 1.38763 * 118.53664 * 359.97438 * 21 20 19 23 23 C 1.38366 * 119.30661 * 0.02562 * 22 21 20 24 24 F 1.35090 * 119.60570 * 180.02562 * 23 22 21 25 25 N 1.32141 * 120.78989 * 0.02562 * 23 22 21 26 26 C 1.48560 * 104.22638 * 39.48156 * 18 17 16 27 27 H 1.08996 * 109.47576 * 180.72401 * 1 2 3 28 28 H 1.08998 * 109.47228 * 300.73082 * 1 2 3 29 29 H 1.09010 * 109.46993 * 60.72786 * 1 2 3 30 30 H 0.96996 * 119.99798 * 119.26388 * 3 2 1 31 31 H 1.09000 * 109.47262 * 299.99251 * 6 4 3 32 32 H 1.08997 * 109.47432 * 59.99893 * 6 4 3 33 33 H 0.97007 * 119.99912 * 179.97438 * 11 10 8 34 34 H 1.08992 * 110.32760 * 122.20965 * 16 2 1 35 35 H 1.09007 * 110.32142 * 359.97438 * 16 2 1 36 36 H 1.08999 * 110.41121 * 217.36334 * 17 16 2 37 37 H 1.09000 * 110.51118 * 94.97352 * 17 16 2 38 38 H 1.07995 * 120.42144 * 359.69766 * 20 19 18 39 39 H 1.08002 * 120.73373 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.34794 * 180.02562 * 22 21 20 41 41 H 1.08996 * 110.40664 * 79.29738 * 26 18 17 42 42 H 1.08997 * 110.41187 * 201.73868 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0400 1.3734 0.0000 4 6 1.7395 2.2037 -1.0182 5 8 1.0473 1.8139 -1.9346 6 6 2.2636 3.6166 -1.0178 7 16 1.6922 4.4725 -2.5069 8 6 2.4287 6.0529 -2.2532 9 1 3.0229 6.2362 -1.3701 10 6 2.2444 7.0625 -3.1876 11 7 2.7943 8.2433 -2.9978 12 14 1.2161 6.7456 -4.7145 13 1 -0.2023 7.0855 -4.4353 14 1 1.7160 7.5868 -5.8315 15 1 1.3169 5.3125 -5.0907 16 6 2.0658 -0.7705 -1.2243 17 6 2.8806 -1.9423 -0.6357 18 7 3.2692 -1.4829 0.7226 19 6 3.5884 -2.5605 1.5405 20 6 4.6273 -3.4130 1.1823 21 6 4.9360 -4.4820 2.0049 22 6 4.1934 -4.6635 3.1629 23 6 3.1729 -3.7772 3.4590 24 9 2.4464 -3.9479 4.5850 25 7 2.9005 -2.7658 2.6534 26 6 2.0661 -0.7711 1.2253 27 1 -0.3634 -1.0275 0.0130 28 1 -0.3633 0.5251 0.8833 29 1 -0.3633 0.5025 -0.8965 30 1 2.5937 1.6850 0.7328 31 1 1.8974 4.1399 -0.1346 32 1 3.3534 3.5999 -1.0045 33 1 2.6658 8.9488 -3.6511 34 1 2.7082 -0.1269 -1.8252 35 1 1.2388 -1.1491 -1.8250 36 1 3.7670 -2.1310 -1.2413 37 1 2.2664 -2.8405 -0.5720 38 1 5.1829 -3.2455 0.2716 39 1 5.7374 -5.1602 1.7512 40 1 4.4096 -5.4880 3.8263 41 1 1.3228 -1.4848 1.5804 42 1 2.3393 -0.0779 2.0209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110722691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:25 Heat of formation + Delta-G solvation = -43.534354 kcal Electronic energy + Delta-G solvation = -26358.852133 eV Core-core repulsion = 22379.347122 eV Total energy + Delta-G solvation = -3979.505011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.06311 -42.06960 -40.90418 -39.12186 -35.85690 -34.66505 -33.77983 -33.18401 -31.25058 -30.21369 -29.92530 -27.84264 -27.21660 -24.60403 -24.28276 -22.62803 -22.29518 -20.56821 -19.86790 -19.07241 -18.35418 -17.79577 -17.70537 -17.12434 -17.08711 -17.04927 -16.70842 -16.37506 -16.15125 -15.53942 -15.20776 -14.98696 -14.81083 -14.62795 -14.33434 -14.23152 -14.06561 -13.70211 -13.58697 -13.34584 -13.22286 -13.18147 -13.05494 -13.00980 -12.70024 -12.53136 -12.07222 -11.95371 -11.84955 -11.16434 -11.14347 -10.84400 -10.75251 -10.72636 -10.52427 -10.12181 -9.29439 -8.97316 -8.50857 -6.21052 -0.11058 0.13546 1.00171 1.32219 1.47356 1.56875 1.61873 2.18077 2.22449 2.26779 2.51475 2.72572 2.81412 2.87307 3.25586 3.46111 3.71299 3.85792 3.93173 3.96013 4.04643 4.13943 4.20330 4.23223 4.29221 4.47420 4.51391 4.63097 4.65717 4.69728 4.72565 4.73476 4.89407 4.93032 5.11983 5.13690 5.20022 5.35327 5.42396 5.59266 5.71244 5.96434 6.12127 6.51104 6.60461 6.94131 7.24033 8.61682 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.002121 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.744200 B =13198.701457 C =13243.279198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 N -0.703 5.703 4 C 0.541 3.459 5 O -0.547 6.547 6 C -0.114 4.114 7 S -0.167 6.167 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.043 3.957 11 N -0.918 5.918 12 Si 0.917 3.083 13 H -0.263 1.263 14 H -0.260 1.260 15 H -0.234 1.234 16 C -0.122 4.122 17 C 0.050 3.950 18 N -0.458 5.458 19 C 0.319 3.681 20 C -0.188 4.188 21 C -0.018 4.018 22 C -0.211 4.211 23 C 0.301 3.699 24 F -0.125 7.125 25 N -0.578 5.578 26 C 0.057 3.943 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.412 0.588 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.277 0.723 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.165 0.835 39 H 0.188 0.812 40 H 0.172 0.828 41 H 0.082 0.918 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 -31.537 11.379 33.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.084 3.916 3 N -0.357 5.357 4 C 0.326 3.674 5 O -0.424 6.424 6 C -0.264 4.264 7 S 0.059 5.941 8 C -0.678 4.678 9 H 0.078 0.922 10 C -0.162 4.162 11 N -0.556 5.556 12 Si 0.738 3.262 13 H -0.188 1.188 14 H -0.184 1.184 15 H -0.158 1.158 16 C -0.161 4.161 17 C -0.075 4.075 18 N -0.176 5.176 19 C 0.087 3.913 20 C -0.210 4.210 21 C -0.043 4.043 22 C -0.233 4.233 23 C 0.148 3.852 24 F -0.104 7.104 25 N -0.298 5.298 26 C -0.071 4.071 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.182 0.818 39 H 0.205 0.795 40 H 0.189 0.811 41 H 0.101 0.899 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.605 -31.081 10.036 32.765 hybrid contribution 0.557 0.641 1.196 1.467 sum 3.162 -30.440 11.232 32.600 Atomic orbital electron populations 1.22145 0.93231 1.03099 1.02826 1.21103 0.94231 0.81000 0.95233 1.45930 1.53843 1.11694 1.24275 1.19775 0.79518 0.86077 0.81996 1.90662 1.38401 1.76917 1.36430 1.23287 1.05301 0.95559 1.02301 1.84595 1.70053 1.10157 1.29246 1.22488 1.36948 0.97155 1.11193 0.92235 1.25605 0.95947 0.93811 1.00840 1.70029 1.44377 1.03657 1.37573 0.85834 0.79571 0.81217 0.79531 1.18752 1.18417 1.15824 1.22686 1.00030 0.96392 0.96944 1.23311 1.00691 0.96875 0.86665 1.62633 1.33851 1.17818 1.03286 1.19854 0.92220 0.89752 0.89449 1.21963 0.98803 0.96191 1.04066 1.21838 0.96928 0.95275 0.90250 1.22057 0.97096 1.02402 1.01712 1.18238 0.90790 0.92575 0.83576 1.91602 1.77056 1.94258 1.47526 1.66656 1.32128 1.23100 1.07947 1.23167 0.90957 0.97401 0.95555 0.90128 0.91997 0.92341 0.75094 0.87395 0.87287 0.91404 0.91571 0.89637 0.87031 0.91409 0.81765 0.79485 0.81061 0.89938 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.17 71.98 0.59 -2.82 16 2 C 0.17 3.61 1.01 4.50 0.00 3.62 16 3 N -0.70 -16.97 5.10 -418.87 -2.13 -19.11 16 4 C 0.54 17.94 7.01 87.66 0.61 18.56 16 5 O -0.55 -21.57 13.16 -3.03 -0.04 -21.61 16 6 C -0.11 -4.27 6.16 71.24 0.44 -3.83 16 7 S -0.17 -8.35 18.55 -56.49 -1.05 -9.40 16 8 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 9 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 10 C 0.04 2.54 5.50 84.86 0.47 3.01 16 11 N -0.92 -56.25 13.97 21.65 0.30 -55.95 16 12 Si 0.92 44.99 27.74 68.60 1.90 46.89 16 13 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.23 -11.39 6.74 99.48 0.67 -10.72 16 16 C -0.12 -2.48 5.49 31.49 0.17 -2.31 16 17 C 0.05 0.73 5.89 86.45 0.51 1.24 16 18 N -0.46 -7.94 5.41 -687.95 -3.72 -11.66 16 19 C 0.32 5.37 6.23 133.04 0.83 6.20 16 20 C -0.19 -1.99 9.40 22.50 0.21 -1.78 16 21 C -0.02 -0.12 10.16 22.43 0.23 0.11 16 22 C -0.21 -2.10 10.08 22.43 0.23 -1.87 16 23 C 0.30 5.28 8.40 84.68 0.71 5.99 16 24 F -0.13 -2.45 17.29 44.97 0.78 -1.67 16 25 N -0.58 -11.64 8.50 -194.34 -1.65 -13.29 16 26 C 0.06 1.05 5.06 86.45 0.44 1.49 16 27 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.65 6.32 -2.38 -0.02 1.64 16 30 H 0.41 8.13 8.26 -92.71 -0.77 7.36 16 31 H 0.11 3.80 8.14 -2.39 -0.02 3.79 16 32 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 33 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 34 H 0.07 1.67 7.31 -2.39 -0.02 1.65 16 35 H 0.09 1.75 7.71 -2.38 -0.02 1.73 16 36 H 0.11 1.26 7.99 -2.39 -0.02 1.24 16 37 H 0.07 0.87 7.97 -2.39 -0.02 0.86 16 38 H 0.16 1.08 7.85 -2.91 -0.02 1.06 16 39 H 0.19 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.08 1.60 6.95 -2.39 -0.02 1.59 16 42 H 0.09 1.74 7.75 -2.39 -0.02 1.72 16 Total: -1.00 -74.93 362.38 0.76 -74.17 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.25 Total: 14.33 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.12 Total: -2.71 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -7.21 Total: -100.01 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.04 Total: -21.61 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.78 Total: -1.67 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.05 Total: -9.40 kcal Total: -74.93 0.76 -74.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.640 kcal (2) G-P(sol) polarization free energy of solvation -74.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds