Wall clock time and date at job start Tue Mar 31 2020 22:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 110.28654 * 2 1 4 4 C 1.34776 * 119.99874 * 59.30556 * 3 2 1 5 5 O 1.21282 * 119.99694 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99997 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.47040 * 179.97438 * 6 4 3 8 8 C 1.76194 * 99.99885 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00456 * 359.97438 * 8 7 6 10 10 C 1.38804 * 119.99784 * 180.02562 * 8 7 6 11 11 N 1.31632 * 119.99563 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00157 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47031 * 90.00112 * 12 10 8 14 14 H 1.48503 * 109.47048 * 210.00017 * 12 10 8 15 15 H 1.48498 * 109.46938 * 330.00191 * 12 10 8 16 16 C 1.54260 * 110.32807 * 122.13018 * 2 1 3 17 17 C 1.54381 * 105.06213 * 118.89636 * 16 2 1 18 18 N 1.48553 * 104.59389 * 23.85245 * 17 16 2 19 19 C 1.39000 * 110.99940 * 200.95843 * 18 17 16 20 20 C 1.39062 * 119.69177 * 300.12954 * 19 18 17 21 21 C 1.38377 * 119.15976 * 179.97438 * 20 19 18 22 22 C 1.38759 * 118.53109 * 0.02562 * 21 20 19 23 23 C 1.38364 * 119.30579 * 359.97438 * 22 21 20 24 24 F 1.35103 * 119.60219 * 179.97438 * 23 22 21 25 25 N 1.32134 * 120.79693 * 359.75125 * 23 22 21 26 26 C 1.48558 * 104.22588 * 320.52051 * 18 17 16 27 27 H 1.09002 * 109.47153 * 299.32281 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.32472 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.32453 * 1 2 3 30 30 H 0.97000 * 120.00378 * 239.29473 * 3 2 1 31 31 H 1.09000 * 109.46558 * 299.99542 * 6 4 3 32 32 H 1.08999 * 109.46703 * 59.99540 * 6 4 3 33 33 H 0.97006 * 119.99824 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.32312 * 237.79553 * 16 2 1 35 35 H 1.09002 * 110.32032 * 359.97438 * 16 2 1 36 36 H 1.08996 * 110.41313 * 142.63749 * 17 16 2 37 37 H 1.09001 * 110.40788 * 265.07948 * 17 16 2 38 38 H 1.08003 * 120.42002 * 359.95181 * 20 19 18 39 39 H 1.08001 * 120.73240 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.34339 * 180.02562 * 22 21 20 41 41 H 1.08997 * 110.40899 * 280.70312 * 26 18 17 42 42 H 1.09006 * 110.41652 * 158.26330 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3742 0.0000 4 6 1.7127 2.2128 1.0037 5 8 0.9992 1.8300 1.9066 6 6 2.2357 3.6262 1.0040 7 16 1.6270 4.4943 2.4710 8 6 2.3685 6.0731 2.2217 9 1 2.9848 6.2492 1.3525 10 6 2.1613 7.0903 3.1431 11 7 2.7156 8.2697 2.9571 12 14 1.0959 6.7857 4.6469 13 1 1.9424 6.2872 5.7606 14 1 0.4394 8.0542 5.0537 15 1 0.0589 5.7737 4.3221 16 6 2.0659 -0.7693 1.2250 17 6 2.8807 -1.9416 0.6375 18 7 3.2693 -1.4835 -0.7212 19 6 3.5887 -2.5618 -1.5380 20 6 4.6274 -3.4139 -1.1792 21 6 4.9356 -4.4843 -2.0002 22 6 4.1923 -4.6674 -3.1576 23 6 3.1720 -3.7813 -3.4544 24 9 2.4448 -3.9536 -4.5800 25 7 2.8973 -2.7712 -2.6482 26 6 2.0662 -0.7721 -1.2246 27 1 -0.3633 0.5033 0.8960 28 1 -0.3633 -1.0276 -0.0121 29 1 -0.3634 0.5243 -0.8839 30 1 2.6084 1.6804 -0.7222 31 1 3.3255 3.6102 1.0169 32 1 1.8903 4.1415 0.1078 33 1 2.5706 8.9807 3.6009 34 1 2.7082 -0.1250 1.8253 35 1 1.2388 -1.1466 1.8265 36 1 3.7671 -2.1297 1.2433 37 1 2.2648 -2.8387 0.5745 38 1 5.1867 -3.2423 -0.2714 39 1 5.7375 -5.1618 -1.7462 40 1 4.4075 -5.4935 -3.8192 41 1 1.3229 -1.4862 -1.5790 42 1 2.3393 -0.0796 -2.0209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110722694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:28 Heat of formation + Delta-G solvation = -20.003493 kcal Electronic energy + Delta-G solvation = -26353.324065 eV Core-core repulsion = 22374.839429 eV Total energy + Delta-G solvation = -3978.484636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.40805 -41.34354 -39.91737 -38.14812 -34.88002 -33.17814 -32.43260 -32.16755 -30.37216 -29.52643 -28.59014 -26.43328 -25.60120 -23.98019 -23.64067 -21.90280 -21.16543 -19.50724 -18.44089 -17.88825 -17.67301 -16.82098 -16.59278 -16.45933 -16.33173 -15.97049 -15.13503 -15.03446 -14.93159 -14.49884 -14.18636 -13.87244 -13.74303 -13.42316 -13.26249 -13.21320 -12.96634 -12.79626 -12.71901 -12.43465 -12.33343 -12.06247 -11.71100 -11.26330 -11.19582 -11.03983 -10.99550 -10.61603 -10.57686 -10.23815 -10.09264 -9.84891 -9.36434 -9.01740 -8.96402 -8.68046 -8.49234 -6.90465 -6.28132 -3.99531 0.44342 0.63728 2.76513 2.77911 2.98166 3.06964 3.29869 3.33890 3.44914 3.50379 3.66317 4.00864 4.07039 4.33483 4.42128 4.44201 4.55359 4.63643 4.75677 4.77713 4.84875 5.07545 5.10954 5.16021 5.19868 5.28115 5.32371 5.40414 5.47862 5.57317 5.58870 5.65488 5.77393 5.79618 5.94379 5.99542 6.02257 6.06398 6.28363 6.59095 6.66093 7.19686 7.66580 7.95006 8.42989 8.52626 9.18007 10.81160 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.002117 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.741673 B =13225.430519 C =13270.174263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.174 3.826 3 N -0.723 5.723 4 C 0.534 3.466 5 O -0.516 6.516 6 C -0.125 4.125 7 S -0.141 6.141 8 C -0.521 4.521 9 H 0.088 0.912 10 C 0.095 3.905 11 N -0.881 5.881 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.235 1.235 16 C -0.124 4.124 17 C 0.042 3.958 18 N -0.452 5.452 19 C 0.342 3.658 20 C -0.192 4.192 21 C -0.027 4.027 22 C -0.223 4.223 23 C 0.333 3.667 24 F -0.113 7.113 25 N -0.550 5.550 26 C 0.045 3.955 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.401 0.599 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.270 0.730 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 -28.710 -11.216 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.086 3.914 3 N -0.378 5.378 4 C 0.320 3.680 5 O -0.391 6.391 6 C -0.275 4.275 7 S 0.085 5.915 8 C -0.669 4.669 9 H 0.106 0.894 10 C -0.114 4.114 11 N -0.517 5.517 12 Si 0.682 3.318 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.159 1.159 16 C -0.163 4.163 17 C -0.083 4.083 18 N -0.169 5.169 19 C 0.110 3.890 20 C -0.214 4.214 21 C -0.053 4.053 22 C -0.245 4.245 23 C 0.179 3.821 24 F -0.092 7.092 25 N -0.270 5.270 26 C -0.082 4.082 27 H 0.106 0.894 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.235 0.765 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.799 -28.221 -9.853 29.946 hybrid contribution 0.833 -0.154 -1.019 1.325 sum 2.631 -28.375 -10.873 30.501 Atomic orbital electron populations 1.22220 0.93077 1.02191 1.04329 1.20951 0.94357 0.82054 0.94021 1.46116 1.53585 1.11224 1.26876 1.20217 0.79900 0.86632 0.81215 1.90658 1.36051 1.76976 1.35395 1.23291 1.04509 0.94522 1.05208 1.84732 1.67614 1.11077 1.28041 1.22326 1.35943 0.95005 1.13585 0.89418 1.24726 0.94932 0.94006 0.97728 1.69944 1.42743 1.02539 1.36498 0.86725 0.82342 0.79366 0.83340 1.19244 1.19995 1.15927 1.22772 1.00125 0.95913 0.97474 1.23323 1.00171 0.97817 0.87014 1.62560 1.34302 1.17169 1.02907 1.19669 0.91026 0.88879 0.89454 1.21657 0.99877 0.96574 1.03336 1.21364 0.96808 0.95605 0.91500 1.21709 0.98734 1.02866 1.01236 1.17868 0.89322 0.91557 0.83390 1.91643 1.76494 1.94105 1.46912 1.66821 1.30857 1.22067 1.07230 1.23358 0.90589 0.97699 0.96560 0.89401 0.92079 0.92221 0.76468 0.88575 0.88569 0.91966 0.89414 0.89518 0.88722 0.92398 0.83596 0.83392 0.83544 0.89685 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.14 37.16 0.30 -1.52 16 2 C 0.17 1.91 1.01 -130.44 -0.13 1.78 16 3 N -0.72 -9.06 5.09 -46.33 -0.24 -9.30 16 4 C 0.53 8.99 7.03 -10.98 -0.08 8.92 16 5 O -0.52 -10.18 13.16 5.56 0.07 -10.11 16 6 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 7 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 8 C -0.52 -14.97 10.04 30.94 0.31 -14.65 16 9 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 10 C 0.09 2.77 5.50 -17.43 -0.10 2.67 16 11 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 12 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 13 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 16 C -0.12 -1.32 5.53 -25.35 -0.14 -1.46 16 17 C 0.04 0.35 5.89 -2.19 -0.01 0.34 16 18 N -0.45 -4.29 5.41 -168.80 -0.91 -5.20 16 19 C 0.34 3.20 6.23 -155.01 -0.97 2.23 16 20 C -0.19 -1.32 9.40 -39.22 -0.37 -1.69 16 21 C -0.03 -0.14 10.16 -39.34 -0.40 -0.54 16 22 C -0.22 -1.43 10.08 -39.34 -0.40 -1.83 16 23 C 0.33 3.11 8.40 -17.38 -0.15 2.96 16 24 F -0.11 -1.12 17.29 2.25 0.04 -1.08 16 25 N -0.55 -5.81 8.49 -12.78 -0.11 -5.92 16 26 C 0.04 0.44 5.06 -2.18 -0.01 0.43 16 27 H 0.09 1.25 6.21 -51.93 -0.32 0.93 16 28 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.40 4.23 8.28 -40.82 -0.34 3.89 16 31 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 32 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.09 1.12 7.41 -51.93 -0.38 0.73 16 35 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.09 0.66 8.00 -51.93 -0.42 0.24 16 37 H 0.06 0.44 7.97 -51.93 -0.41 0.02 16 38 H 0.15 0.76 7.86 -52.48 -0.41 0.35 16 39 H 0.15 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.15 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.09 0.87 6.95 -51.93 -0.36 0.51 16 42 H 0.09 0.94 7.76 -51.93 -0.40 0.53 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -33.80 362.43 -9.09 -42.89 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.56 Total: 2.09 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -1.91 Total: -4.50 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.48 Total: -46.24 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.80 -9.09 -42.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.885 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds