Wall clock time and date at job start Tue Mar 31 2020 22:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 110.28654 * 2 1 4 4 C 1.34776 * 119.99874 * 59.30556 * 3 2 1 5 5 O 1.21282 * 119.99694 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99997 * 179.97438 * 4 3 2 7 7 S 1.81001 * 109.47040 * 179.97438 * 6 4 3 8 8 C 1.76194 * 99.99885 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00456 * 359.97438 * 8 7 6 10 10 C 1.38804 * 119.99784 * 180.02562 * 8 7 6 11 11 N 1.31632 * 119.99563 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00157 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47031 * 90.00112 * 12 10 8 14 14 H 1.48503 * 109.47048 * 210.00017 * 12 10 8 15 15 H 1.48498 * 109.46938 * 330.00191 * 12 10 8 16 16 C 1.54260 * 110.32807 * 122.13018 * 2 1 3 17 17 C 1.54381 * 105.06213 * 118.89636 * 16 2 1 18 18 N 1.48553 * 104.59389 * 23.85245 * 17 16 2 19 19 C 1.39000 * 110.99940 * 200.95843 * 18 17 16 20 20 C 1.39062 * 119.69177 * 300.12954 * 19 18 17 21 21 C 1.38377 * 119.15976 * 179.97438 * 20 19 18 22 22 C 1.38759 * 118.53109 * 0.02562 * 21 20 19 23 23 C 1.38364 * 119.30579 * 359.97438 * 22 21 20 24 24 F 1.35103 * 119.60219 * 179.97438 * 23 22 21 25 25 N 1.32134 * 120.79693 * 359.75125 * 23 22 21 26 26 C 1.48558 * 104.22588 * 320.52051 * 18 17 16 27 27 H 1.09002 * 109.47153 * 299.32281 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.32472 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.32453 * 1 2 3 30 30 H 0.97000 * 120.00378 * 239.29473 * 3 2 1 31 31 H 1.09000 * 109.46558 * 299.99542 * 6 4 3 32 32 H 1.08999 * 109.46703 * 59.99540 * 6 4 3 33 33 H 0.97006 * 119.99824 * 179.97438 * 11 10 8 34 34 H 1.09002 * 110.32312 * 237.79553 * 16 2 1 35 35 H 1.09002 * 110.32032 * 359.97438 * 16 2 1 36 36 H 1.08996 * 110.41313 * 142.63749 * 17 16 2 37 37 H 1.09001 * 110.40788 * 265.07948 * 17 16 2 38 38 H 1.08003 * 120.42002 * 359.95181 * 20 19 18 39 39 H 1.08001 * 120.73240 * 179.97438 * 21 20 19 40 40 H 1.08003 * 120.34339 * 180.02562 * 22 21 20 41 41 H 1.08997 * 110.40899 * 280.70312 * 26 18 17 42 42 H 1.09006 * 110.41652 * 158.26330 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3742 0.0000 4 6 1.7127 2.2128 1.0037 5 8 0.9992 1.8300 1.9066 6 6 2.2357 3.6262 1.0040 7 16 1.6270 4.4943 2.4710 8 6 2.3685 6.0731 2.2217 9 1 2.9848 6.2492 1.3525 10 6 2.1613 7.0903 3.1431 11 7 2.7156 8.2697 2.9571 12 14 1.0959 6.7857 4.6469 13 1 1.9424 6.2872 5.7606 14 1 0.4394 8.0542 5.0537 15 1 0.0589 5.7737 4.3221 16 6 2.0659 -0.7693 1.2250 17 6 2.8807 -1.9416 0.6375 18 7 3.2693 -1.4835 -0.7212 19 6 3.5887 -2.5618 -1.5380 20 6 4.6274 -3.4139 -1.1792 21 6 4.9356 -4.4843 -2.0002 22 6 4.1923 -4.6674 -3.1576 23 6 3.1720 -3.7813 -3.4544 24 9 2.4448 -3.9536 -4.5800 25 7 2.8973 -2.7712 -2.6482 26 6 2.0662 -0.7721 -1.2246 27 1 -0.3633 0.5033 0.8960 28 1 -0.3633 -1.0276 -0.0121 29 1 -0.3634 0.5243 -0.8839 30 1 2.6084 1.6804 -0.7222 31 1 3.3255 3.6102 1.0169 32 1 1.8903 4.1415 0.1078 33 1 2.5706 8.9807 3.6009 34 1 2.7082 -0.1250 1.8253 35 1 1.2388 -1.1466 1.8265 36 1 3.7671 -2.1297 1.2433 37 1 2.2648 -2.8387 0.5745 38 1 5.1867 -3.2423 -0.2714 39 1 5.7375 -5.1618 -1.7462 40 1 4.4075 -5.4935 -3.8192 41 1 1.3229 -1.4862 -1.5790 42 1 2.3393 -0.0796 -2.0209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110722694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:28 Heat of formation + Delta-G solvation = -43.376143 kcal Electronic energy + Delta-G solvation = -26354.337579 eV Core-core repulsion = 22374.839429 eV Total energy + Delta-G solvation = -3979.498150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.06030 -42.06941 -40.90589 -39.12516 -35.85454 -34.66527 -33.77927 -33.18574 -31.25519 -30.21352 -29.91868 -27.84196 -27.21834 -24.60112 -24.28604 -22.62112 -22.29798 -20.57123 -19.86935 -19.07300 -18.35545 -17.80119 -17.70415 -17.12373 -17.08875 -17.04809 -16.70171 -16.37883 -16.15098 -15.53641 -15.21184 -14.98767 -14.81115 -14.62705 -14.33073 -14.23727 -14.06582 -13.70405 -13.58906 -13.34763 -13.22369 -13.17699 -13.05888 -12.99456 -12.71483 -12.52507 -12.07194 -11.95562 -11.85293 -11.16327 -11.14112 -10.84538 -10.74528 -10.72532 -10.52433 -10.12159 -9.29670 -8.97326 -8.50874 -6.21031 -0.11093 0.13518 1.00199 1.32066 1.47438 1.56872 1.61697 2.18114 2.22394 2.26758 2.51398 2.72587 2.81434 2.87289 3.25737 3.46078 3.71289 3.85734 3.93183 3.96012 4.04529 4.13906 4.20293 4.23285 4.29164 4.47403 4.51439 4.63089 4.65746 4.69763 4.72539 4.73462 4.89469 4.93042 5.11950 5.13517 5.20347 5.35636 5.42335 5.59218 5.71248 5.96389 6.12153 6.51199 6.60405 6.94116 7.24004 8.61675 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.027889 B = 0.002117 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.741673 B =13225.430519 C =13270.174263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.171 3.829 3 N -0.703 5.703 4 C 0.541 3.459 5 O -0.547 6.547 6 C -0.113 4.113 7 S -0.167 6.167 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.043 3.957 11 N -0.918 5.918 12 Si 0.917 3.083 13 H -0.261 1.261 14 H -0.260 1.260 15 H -0.235 1.235 16 C -0.122 4.122 17 C 0.050 3.950 18 N -0.458 5.458 19 C 0.319 3.681 20 C -0.188 4.188 21 C -0.018 4.018 22 C -0.211 4.211 23 C 0.301 3.699 24 F -0.125 7.125 25 N -0.578 5.578 26 C 0.057 3.943 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.412 0.588 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.277 0.723 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.165 0.835 39 H 0.188 0.812 40 H 0.172 0.828 41 H 0.082 0.918 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 -31.561 -11.300 33.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 N -0.357 5.357 4 C 0.326 3.674 5 O -0.424 6.424 6 C -0.264 4.264 7 S 0.060 5.940 8 C -0.678 4.678 9 H 0.078 0.922 10 C -0.162 4.162 11 N -0.556 5.556 12 Si 0.738 3.262 13 H -0.186 1.186 14 H -0.185 1.185 15 H -0.159 1.159 16 C -0.161 4.161 17 C -0.075 4.075 18 N -0.176 5.176 19 C 0.087 3.913 20 C -0.210 4.210 21 C -0.043 4.043 22 C -0.233 4.233 23 C 0.148 3.852 24 F -0.105 7.105 25 N -0.298 5.298 26 C -0.071 4.071 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.183 0.817 39 H 0.205 0.795 40 H 0.189 0.811 41 H 0.100 0.900 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.715 -31.094 -9.983 32.770 hybrid contribution 0.643 0.607 -1.146 1.447 sum 3.359 -30.487 -11.128 32.628 Atomic orbital electron populations 1.22157 0.93259 1.03076 1.02889 1.21101 0.94243 0.80980 0.95227 1.45930 1.52649 1.11430 1.25734 1.19779 0.79718 0.86068 0.81803 1.90658 1.37611 1.77287 1.36850 1.23286 1.05202 0.95496 1.02458 1.84595 1.67941 1.09564 1.31949 1.22489 1.35552 0.97126 1.12626 0.92231 1.25607 0.96181 0.93817 1.00598 1.70027 1.44196 1.03507 1.37898 0.85834 0.80765 0.79732 0.79823 1.18598 1.18477 1.15918 1.22697 1.00032 0.96438 0.96953 1.23310 1.00682 0.96867 0.86662 1.62637 1.33833 1.17817 1.03292 1.19854 0.92203 0.89732 0.89498 1.21963 0.98823 0.96143 1.04066 1.21840 0.96926 0.95294 0.90233 1.22057 0.97124 1.02359 1.01712 1.18242 0.90766 0.92617 0.83571 1.91606 1.77037 1.94238 1.47577 1.66664 1.32064 1.23101 1.08010 1.23164 0.90971 0.97390 0.95562 0.92201 0.90169 0.92079 0.75094 0.87306 0.87366 0.91403 0.91530 0.89638 0.86970 0.91438 0.81740 0.79475 0.81062 0.89952 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.14 71.98 0.59 -2.87 16 2 C 0.17 3.62 1.01 4.50 0.00 3.62 16 3 N -0.70 -16.98 5.09 -418.87 -2.13 -19.11 16 4 C 0.54 17.94 7.03 87.66 0.62 18.56 16 5 O -0.55 -21.57 13.16 -3.04 -0.04 -21.61 16 6 C -0.11 -4.27 6.16 71.24 0.44 -3.83 16 7 S -0.17 -8.35 18.55 -56.49 -1.05 -9.40 16 8 C -0.53 -31.00 10.04 67.96 0.68 -30.31 16 9 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 10 C 0.04 2.54 5.50 84.86 0.47 3.01 16 11 N -0.92 -56.24 13.97 21.65 0.30 -55.94 16 12 Si 0.92 44.99 27.74 68.60 1.90 46.89 16 13 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 16 C -0.12 -2.48 5.53 31.49 0.17 -2.30 16 17 C 0.05 0.73 5.89 86.45 0.51 1.24 16 18 N -0.46 -7.90 5.41 -687.96 -3.72 -11.62 16 19 C 0.32 5.36 6.23 133.03 0.83 6.19 16 20 C -0.19 -1.98 9.40 22.50 0.21 -1.76 16 21 C -0.02 -0.12 10.16 22.43 0.23 0.11 16 22 C -0.21 -2.09 10.08 22.42 0.23 -1.86 16 23 C 0.30 5.28 8.40 84.68 0.71 5.99 16 24 F -0.13 -2.46 17.29 44.97 0.78 -1.68 16 25 N -0.58 -11.64 8.49 -194.34 -1.65 -13.29 16 26 C 0.06 1.05 5.06 86.45 0.44 1.49 16 27 H 0.06 1.71 6.21 -2.39 -0.01 1.70 16 28 H 0.08 1.45 8.12 -2.39 -0.02 1.43 16 29 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.41 8.14 8.28 -92.71 -0.77 7.37 16 31 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 33 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 34 H 0.07 1.66 7.41 -2.39 -0.02 1.64 16 35 H 0.09 1.74 7.71 -2.39 -0.02 1.72 16 36 H 0.11 1.25 8.00 -2.39 -0.02 1.23 16 37 H 0.07 0.87 7.97 -2.39 -0.02 0.85 16 38 H 0.17 1.07 7.86 -2.91 -0.02 1.04 16 39 H 0.19 -0.24 8.06 -2.91 -0.02 -0.27 16 40 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.08 1.61 6.95 -2.39 -0.02 1.59 16 42 H 0.09 1.74 7.76 -2.38 -0.02 1.72 16 Total: -1.00 -74.93 362.43 0.76 -74.17 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.25 Total: 14.34 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.12 Total: -2.74 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -7.20 Total: -99.97 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.04 Total: -21.61 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.78 Total: -1.68 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.05 Total: -9.40 kcal Total: -74.93 0.76 -74.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.793 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds