Wall clock time and date at job start Tue Mar 31 2020 22:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48500 * 109.47406 * 270.00175 * 3 2 1 5 5 H 1.48501 * 109.47491 * 30.00646 * 3 2 1 6 6 H 1.48509 * 109.47034 * 150.00490 * 3 2 1 7 7 C 1.38796 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00248 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99998 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00178 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47458 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00089 * 5.19857 * 11 10 9 13 13 N 1.34780 * 120.00458 * 185.19818 * 11 10 9 14 14 C 1.46494 * 120.00174 * 185.03928 * 13 11 10 15 15 C 1.53000 * 109.47080 * 174.87391 * 14 13 11 16 16 N 1.46498 * 112.85353 * 312.82764 * 15 14 13 17 17 C 1.38993 * 120.00067 * 294.37629 * 16 15 14 18 18 C 1.39077 * 119.68714 * 357.07161 * 17 16 15 19 19 C 1.38375 * 119.15900 * 180.30199 * 18 17 16 20 20 C 1.38766 * 118.53072 * 359.48296 * 19 18 17 21 21 C 1.38369 * 119.30538 * 0.49724 * 20 19 18 22 22 F 1.35095 * 119.60244 * 179.74318 * 21 20 19 23 23 N 1.32137 * 120.79276 * 359.76729 * 21 20 19 24 24 C 1.53792 * 113.60931 * 84.02009 * 15 14 13 25 25 C 1.54052 * 86.98022 * 140.02316 * 24 15 14 26 26 C 1.53776 * 113.61486 * 181.62502 * 15 14 13 27 27 H 0.96993 * 120.00351 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47164 * 59.99556 * 10 9 7 29 29 H 1.09003 * 109.46644 * 300.00010 * 10 9 7 30 30 H 0.96999 * 119.99350 * 5.04097 * 13 11 10 31 31 H 1.09004 * 109.46863 * 54.87764 * 14 13 11 32 32 H 1.08991 * 109.47457 * 294.87914 * 14 13 11 33 33 H 0.97001 * 120.00134 * 114.37054 * 16 15 14 34 34 H 1.08003 * 120.41874 * 0.03081 * 18 17 16 35 35 H 1.07996 * 120.73541 * 179.73235 * 19 18 17 36 36 H 1.08003 * 120.34607 * 180.24643 * 20 19 18 37 37 H 1.08997 * 113.60920 * 254.61257 * 24 15 14 38 38 H 1.08999 * 113.61385 * 25.51940 * 24 15 14 39 39 H 1.09008 * 113.61539 * 220.02217 * 25 24 15 40 40 H 1.09003 * 113.69536 * 89.12998 * 25 24 15 41 41 H 1.08998 * 113.61585 * 334.48885 * 26 15 14 42 42 H 1.09002 * 113.60949 * 105.30848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0868 -2.9843 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3435 -2.3003 0.0933 13 7 6.0468 -4.4896 -0.1093 14 6 7.4855 -4.7423 0.0013 15 6 7.7421 -6.2504 -0.0268 16 7 6.8545 -6.9953 0.8695 17 6 6.9447 -6.8150 2.2447 18 6 7.9203 -5.9723 2.7664 19 6 8.0044 -5.8056 4.1375 20 6 7.0996 -6.4813 4.9440 21 6 6.1535 -7.3039 4.3586 22 9 5.2730 -7.9687 5.1384 23 7 6.1011 -7.4476 3.0461 24 6 7.8166 -6.8362 -1.4468 25 6 8.9776 -7.7111 -0.9372 26 6 9.2257 -6.6257 0.1237 27 1 -0.4850 0.8400 0.0004 28 1 3.6435 -3.4308 -0.8926 29 1 3.6442 -3.4320 0.8874 30 1 5.4349 -5.2271 -0.2594 31 1 7.8561 -4.3281 0.9391 32 1 8.0027 -4.2701 -0.8338 33 1 6.2037 -7.6144 0.5032 34 1 8.6066 -5.4579 2.1099 35 1 8.7549 -5.1607 4.5701 36 1 7.1361 -6.3693 6.0176 37 1 6.9315 -7.4052 -1.7313 38 1 8.1159 -6.1107 -2.2032 39 1 9.7925 -7.8158 -1.6535 40 1 8.6564 -8.6651 -0.5191 41 1 9.9096 -5.8429 -0.2042 42 1 9.4778 -7.0237 1.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111765419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:03 Heat of formation + Delta-G solvation = -9.384446 kcal Electronic energy + Delta-G solvation = -26650.849674 eV Core-core repulsion = 22672.825514 eV Total energy + Delta-G solvation = -3978.024160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.15974 -41.21311 -39.61920 -38.83884 -34.63620 -34.12201 -32.67747 -32.43823 -30.14785 -29.52947 -27.53310 -26.31751 -25.60372 -23.76327 -23.60094 -22.56353 -20.54500 -19.81450 -18.35340 -18.00834 -17.66755 -16.77421 -16.58494 -16.40052 -16.21818 -15.73610 -15.47909 -15.25752 -15.13694 -14.94428 -14.02003 -13.97157 -13.85657 -13.77060 -13.43326 -13.37056 -13.06180 -12.88439 -12.79523 -12.44436 -12.30357 -11.90637 -11.46394 -11.39444 -11.26730 -11.01243 -10.78560 -10.65857 -10.47829 -9.99200 -9.92689 -9.85045 -9.54795 -9.02921 -8.97333 -8.51046 -8.12327 -6.92030 -6.28680 -4.00610 0.82938 1.04766 2.38072 2.75635 2.94843 3.27892 3.32895 3.44573 3.50064 3.61785 3.63158 3.88073 4.08952 4.23443 4.27694 4.33033 4.39540 4.55389 4.74157 4.78843 4.87653 4.98892 5.10267 5.16953 5.21541 5.26514 5.29359 5.42102 5.43011 5.46564 5.53351 5.61989 5.62443 5.75662 5.76286 5.92633 6.01565 6.21971 6.45499 6.61844 7.05483 7.56717 7.63338 7.94416 8.42201 8.45685 9.17310 10.80677 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.003031 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.908915 B = 9235.391003 C =10657.742176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.730 5.730 14 C 0.117 3.883 15 C 0.144 3.856 16 N -0.698 5.698 17 C 0.446 3.554 18 C -0.247 4.247 19 C -0.008 4.008 20 C -0.253 4.253 21 C 0.354 3.646 22 F -0.113 7.113 23 N -0.575 5.575 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.147 4.147 27 H 0.271 0.729 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.249 -18.651 2.433 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.384 5.384 14 C -0.009 4.009 15 C 0.056 3.944 16 N -0.331 5.331 17 C 0.210 3.790 18 C -0.272 4.272 19 C -0.034 4.034 20 C -0.277 4.277 21 C 0.200 3.800 22 F -0.092 7.092 23 N -0.299 5.299 24 C -0.170 4.170 25 C -0.174 4.174 26 C -0.186 4.186 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.233 0.767 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.832 -17.442 2.106 28.023 hybrid contribution -1.156 -0.578 0.331 1.334 sum 20.676 -18.020 2.437 27.535 Atomic orbital electron populations 1.69936 1.05926 1.27772 1.48062 1.24711 0.94445 0.98952 0.93175 0.86736 0.81924 0.83288 0.79911 1.19206 1.19911 1.15909 1.22317 0.88261 0.97550 1.58788 0.89421 1.84737 1.09322 0.99979 1.97425 1.23265 0.94046 1.04385 1.05713 1.20266 0.90567 0.82144 0.75239 1.90695 1.58794 1.42204 1.47752 1.45763 1.07650 1.08989 1.76000 1.21765 0.82882 0.93194 1.03068 1.21630 0.91164 0.90386 0.91257 1.44096 1.40747 1.47311 1.00901 1.17639 0.88048 0.88630 0.84682 1.21677 1.03355 1.05640 0.96504 1.21230 0.95608 0.94079 0.92471 1.21514 0.99897 1.04008 1.02234 1.17621 0.87049 0.90286 0.84997 1.91628 1.67177 1.78712 1.71711 1.66165 1.29278 1.30152 1.04281 1.23292 0.99794 0.99689 0.94253 1.22852 0.98542 0.97650 0.98311 1.23428 0.94647 0.99641 1.00862 0.91930 0.88756 0.88489 0.76739 0.90696 0.90329 0.75405 0.83837 0.83795 0.83858 0.90389 0.87893 0.90731 0.89929 0.88341 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.81 13.97 55.49 0.78 -26.03 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.86 21.88 27.74 -169.99 -4.71 17.17 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.21 10.04 30.94 0.31 -14.90 16 8 H 0.09 2.68 8.03 -52.49 -0.42 2.25 16 9 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.43 6.16 36.00 0.22 -2.21 16 11 C 0.53 9.35 7.84 -10.99 -0.09 9.27 16 12 O -0.52 -10.96 15.88 5.55 0.09 -10.88 16 13 N -0.73 -8.98 5.37 -60.30 -0.32 -9.30 16 14 C 0.12 1.14 4.80 -4.04 -0.02 1.12 16 15 C 0.14 0.96 0.56 -131.00 -0.07 0.89 16 16 N -0.70 -5.55 4.64 -46.98 -0.22 -5.76 16 17 C 0.45 4.64 7.37 -155.02 -1.14 3.50 16 18 C -0.25 -2.29 7.51 -39.22 -0.29 -2.59 16 19 C -0.01 -0.07 10.16 -39.34 -0.40 -0.47 16 20 C -0.25 -2.44 10.08 -39.34 -0.40 -2.83 16 21 C 0.35 4.28 8.40 -17.37 -0.15 4.14 16 22 F -0.11 -1.42 17.29 2.25 0.04 -1.38 16 23 N -0.58 -7.21 10.40 -12.78 -0.13 -7.34 16 24 C -0.13 -0.68 7.38 -25.77 -0.19 -0.87 16 25 C -0.14 -0.64 8.00 -25.78 -0.21 -0.84 16 26 C -0.15 -0.77 6.08 -25.92 -0.16 -0.93 16 27 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.86 8.14 -51.91 -0.42 1.44 16 30 H 0.40 4.18 8.07 -40.82 -0.33 3.85 16 31 H 0.07 0.82 5.92 -51.93 -0.31 0.51 16 32 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 33 H 0.41 2.99 8.78 -40.82 -0.36 2.63 16 34 H 0.14 1.13 4.31 -52.48 -0.23 0.90 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.10 0.51 7.94 -51.93 -0.41 0.09 16 39 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.43 8.10 -51.93 -0.42 0.00 16 42 H 0.08 0.47 6.74 -51.93 -0.35 0.12 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -35.25 365.58 -9.00 -44.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.35 Total: 3.37 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.68 Total: -4.00 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.10 Total: -48.44 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.25 -9.00 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111765419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.864 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds