Wall clock time and date at job start Tue Mar 31 2020 22:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99616 * 2 1 4 4 H 1.48500 * 109.47406 * 270.00175 * 3 2 1 5 5 H 1.48501 * 109.47491 * 30.00646 * 3 2 1 6 6 H 1.48509 * 109.47034 * 150.00490 * 3 2 1 7 7 C 1.38796 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00248 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99998 * 179.97438 * 7 2 1 10 10 C 1.81001 * 100.00178 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47458 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00089 * 5.19857 * 11 10 9 13 13 N 1.34780 * 120.00458 * 185.19818 * 11 10 9 14 14 C 1.46494 * 120.00174 * 185.03928 * 13 11 10 15 15 C 1.53000 * 109.47080 * 174.87391 * 14 13 11 16 16 N 1.46498 * 112.85353 * 312.82764 * 15 14 13 17 17 C 1.38993 * 120.00067 * 294.37629 * 16 15 14 18 18 C 1.39077 * 119.68714 * 357.07161 * 17 16 15 19 19 C 1.38375 * 119.15900 * 180.30199 * 18 17 16 20 20 C 1.38766 * 118.53072 * 359.48296 * 19 18 17 21 21 C 1.38369 * 119.30538 * 0.49724 * 20 19 18 22 22 F 1.35095 * 119.60244 * 179.74318 * 21 20 19 23 23 N 1.32137 * 120.79276 * 359.76729 * 21 20 19 24 24 C 1.53792 * 113.60931 * 84.02009 * 15 14 13 25 25 C 1.54052 * 86.98022 * 140.02316 * 24 15 14 26 26 C 1.53776 * 113.61486 * 181.62502 * 15 14 13 27 27 H 0.96993 * 120.00351 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47164 * 59.99556 * 10 9 7 29 29 H 1.09003 * 109.46644 * 300.00010 * 10 9 7 30 30 H 0.96999 * 119.99350 * 5.04097 * 13 11 10 31 31 H 1.09004 * 109.46863 * 54.87764 * 14 13 11 32 32 H 1.08991 * 109.47457 * 294.87914 * 14 13 11 33 33 H 0.97001 * 120.00134 * 114.37054 * 16 15 14 34 34 H 1.08003 * 120.41874 * 0.03081 * 18 17 16 35 35 H 1.07996 * 120.73541 * 179.73235 * 19 18 17 36 36 H 1.08003 * 120.34607 * 180.24643 * 20 19 18 37 37 H 1.08997 * 113.60920 * 254.61257 * 24 15 14 38 38 H 1.08999 * 113.61385 * 25.51940 * 24 15 14 39 39 H 1.09008 * 113.61539 * 220.02217 * 25 24 15 40 40 H 1.09003 * 113.69536 * 89.12998 * 25 24 15 41 41 H 1.08998 * 113.61585 * 334.48885 * 26 15 14 42 42 H 1.09002 * 113.60949 * 105.30848 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0014 9 16 3.7723 -1.2019 -0.0012 10 6 4.0868 -2.9843 -0.0025 11 6 5.5732 -3.2323 -0.0026 12 8 6.3435 -2.3003 0.0933 13 7 6.0468 -4.4896 -0.1093 14 6 7.4855 -4.7423 0.0013 15 6 7.7421 -6.2504 -0.0268 16 7 6.8545 -6.9953 0.8695 17 6 6.9447 -6.8150 2.2447 18 6 7.9203 -5.9723 2.7664 19 6 8.0044 -5.8056 4.1375 20 6 7.0996 -6.4813 4.9440 21 6 6.1535 -7.3039 4.3586 22 9 5.2730 -7.9687 5.1384 23 7 6.1011 -7.4476 3.0461 24 6 7.8166 -6.8362 -1.4468 25 6 8.9776 -7.7111 -0.9372 26 6 9.2257 -6.6257 0.1237 27 1 -0.4850 0.8400 0.0004 28 1 3.6435 -3.4308 -0.8926 29 1 3.6442 -3.4320 0.8874 30 1 5.4349 -5.2271 -0.2594 31 1 7.8561 -4.3281 0.9391 32 1 8.0027 -4.2701 -0.8338 33 1 6.2037 -7.6144 0.5032 34 1 8.6066 -5.4579 2.1099 35 1 8.7549 -5.1607 4.5701 36 1 7.1361 -6.3693 6.0176 37 1 6.9315 -7.4052 -1.7313 38 1 8.1159 -6.1107 -2.2032 39 1 9.7925 -7.8158 -1.6535 40 1 8.6564 -8.6651 -0.5191 41 1 9.9096 -5.8429 -0.2042 42 1 9.4778 -7.0237 1.1067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111765419.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:02 Heat of formation + Delta-G solvation = -33.780991 kcal Electronic energy + Delta-G solvation = -26651.907588 eV Core-core repulsion = 22672.825514 eV Total energy + Delta-G solvation = -3979.082073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.04732 -41.89758 -40.60325 -39.84500 -35.55629 -34.99016 -34.69464 -33.43677 -31.51617 -30.25348 -28.53345 -27.83542 -26.77203 -24.53245 -24.31884 -23.20523 -21.81214 -20.45444 -19.92373 -19.04545 -18.52970 -17.95384 -17.53738 -17.41442 -17.12375 -17.08665 -16.63118 -16.45179 -16.16205 -15.81083 -15.63873 -14.98870 -14.85670 -14.83302 -14.57797 -14.53673 -14.11530 -13.99442 -13.55584 -13.36656 -13.29765 -13.04194 -12.95177 -12.85115 -12.65727 -12.01520 -11.88296 -11.77555 -11.28820 -11.23017 -11.18847 -10.97956 -10.78600 -10.64966 -10.58055 -10.11589 -9.02028 -8.82937 -8.53469 -6.24997 0.04227 0.33017 0.96349 1.30442 1.45098 1.52465 1.54180 1.73373 2.21374 2.25621 2.67910 2.69155 2.84704 2.88354 3.33390 3.56644 3.62879 3.72719 3.83023 3.88404 3.93302 4.14244 4.15521 4.21310 4.40918 4.44450 4.54749 4.64786 4.78535 4.83276 4.84654 4.92922 5.04653 5.09134 5.13937 5.21141 5.30201 5.40543 5.56787 5.68225 5.94362 6.08772 6.34981 6.40442 6.90869 6.91124 7.14200 8.59314 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011497 B = 0.003031 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.908915 B = 9235.391003 C =10657.742176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.917 3.083 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.533 4.533 8 H 0.058 0.942 9 S -0.166 6.166 10 C -0.113 4.113 11 C 0.537 3.463 12 O -0.557 6.557 13 N -0.706 5.706 14 C 0.113 3.887 15 C 0.145 3.855 16 N -0.692 5.692 17 C 0.433 3.567 18 C -0.250 4.250 19 C -0.008 4.008 20 C -0.251 4.251 21 C 0.323 3.677 22 F -0.126 7.126 23 N -0.604 5.604 24 C -0.128 4.128 25 C -0.130 4.130 26 C -0.141 4.141 27 H 0.278 0.722 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.410 0.590 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.411 0.589 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.812 -18.755 1.878 30.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.159 1.159 7 C -0.681 4.681 8 H 0.076 0.924 9 S 0.061 5.939 10 C -0.264 4.264 11 C 0.322 3.678 12 O -0.435 6.435 13 N -0.359 5.359 14 C -0.012 4.012 15 C 0.057 3.943 16 N -0.325 5.325 17 C 0.197 3.803 18 C -0.274 4.274 19 C -0.033 4.033 20 C -0.275 4.275 21 C 0.170 3.830 22 F -0.105 7.105 23 N -0.329 5.329 24 C -0.165 4.165 25 C -0.167 4.167 26 C -0.180 4.180 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.246 0.754 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.249 0.751 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.181 0.819 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.131 0.869 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.395 -17.607 1.540 30.125 hybrid contribution -1.915 -0.710 0.488 2.100 sum 22.479 -18.317 2.028 29.068 Atomic orbital electron populations 1.70019 1.07427 1.29126 1.49027 1.25605 0.95295 1.02396 0.92724 0.85838 0.80661 0.79307 0.80392 1.18364 1.18289 1.15947 1.22473 0.90462 0.96619 1.58538 0.92405 1.84577 1.06174 1.05625 1.97559 1.23262 0.96474 0.99931 1.06774 1.19819 0.89090 0.83381 0.75504 1.90684 1.59091 1.43649 1.50109 1.45565 1.09343 1.07374 1.73608 1.22028 0.80632 0.95469 1.03032 1.21715 0.92086 0.88238 0.92286 1.44169 1.40939 1.47180 1.00221 1.17926 0.88177 0.88846 0.85365 1.21956 1.03071 1.05147 0.97233 1.21666 0.95689 0.93763 0.92222 1.21791 0.99151 1.03089 1.03448 1.18003 0.88095 0.91662 0.85235 1.91587 1.67756 1.79171 1.71975 1.66102 1.30567 1.31388 1.04851 1.23328 1.00295 0.99789 0.93104 1.22800 0.98631 0.97104 0.98161 1.23458 0.93370 1.00164 1.01007 0.91301 0.87111 0.88095 0.75444 0.91482 0.89473 0.75138 0.82361 0.80627 0.81946 0.89903 0.87108 0.89520 0.90413 0.86902 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.58 13.97 21.65 0.30 -56.28 16 2 C 0.05 2.68 5.50 84.86 0.47 3.14 16 3 Si 0.92 45.07 27.74 68.60 1.90 46.98 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 7 C -0.53 -31.58 10.04 67.95 0.68 -30.90 16 8 H 0.06 3.64 8.03 -2.91 -0.02 3.62 16 9 S -0.17 -8.43 18.55 -56.49 -1.05 -9.48 16 10 C -0.11 -4.39 6.16 71.23 0.44 -3.95 16 11 C 0.54 18.13 7.84 87.66 0.69 18.81 16 12 O -0.56 -22.85 15.88 -3.05 -0.05 -22.90 16 13 N -0.71 -15.97 5.37 -463.07 -2.49 -18.46 16 14 C 0.11 1.93 4.80 86.38 0.41 2.34 16 15 C 0.14 1.57 0.56 4.13 0.00 1.57 16 16 N -0.69 -9.91 4.64 -302.56 -1.40 -11.31 16 17 C 0.43 8.56 7.37 133.04 0.98 9.54 16 18 C -0.25 -4.17 7.51 22.50 0.17 -4.00 16 19 C -0.01 -0.13 10.16 22.43 0.23 0.10 16 20 C -0.25 -4.57 10.08 22.43 0.23 -4.35 16 21 C 0.32 7.85 8.40 84.68 0.71 8.56 16 22 F -0.13 -3.27 17.29 44.97 0.78 -2.49 16 23 N -0.60 -15.12 10.40 -194.34 -2.02 -17.15 16 24 C -0.13 -0.93 7.38 31.22 0.23 -0.70 16 25 C -0.13 -0.83 8.00 31.21 0.25 -0.58 16 26 C -0.14 -1.08 6.08 31.12 0.19 -0.89 16 27 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 29 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.41 7.71 8.07 -92.71 -0.75 6.96 16 31 H 0.07 1.31 5.92 -2.38 -0.01 1.30 16 32 H 0.09 1.42 7.91 -2.39 -0.02 1.41 16 33 H 0.41 5.48 8.78 -92.71 -0.81 4.66 16 34 H 0.16 2.08 4.31 -2.91 -0.01 2.07 16 35 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 38 H 0.11 0.70 7.94 -2.39 -0.02 0.69 16 39 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.57 8.10 -2.39 -0.02 0.56 16 42 H 0.08 0.70 6.74 -2.39 -0.02 0.68 16 Total: -1.00 -77.49 365.58 1.13 -76.35 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.52 Total: 16.02 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.68 Total: -1.29 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -5.61 Total: -103.20 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.78 Total: -2.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.05 Total: -9.48 kcal Total: -77.49 1.13 -76.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111765419.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.572 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds