Wall clock time and date at job start Tue Mar 31 2020 23:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.88475 * 2 1 4 4 C 1.54908 * 111.00553 * 236.11522 * 2 1 3 5 5 N 1.47426 * 104.83176 * 204.91634 * 4 2 1 6 6 C 1.34778 * 125.64903 * 204.08949 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99999 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00046 * 14 12 10 18 18 C 1.47021 * 108.70439 * 24.36014 * 5 4 2 19 19 C 1.54340 * 107.26360 * 358.58153 * 18 5 4 20 20 H 1.09000 * 111.00235 * 219.60023 * 19 18 5 21 21 N 1.46498 * 110.51563 * 96.45507 * 19 18 5 22 22 C 1.39001 * 119.99990 * 91.49677 * 21 19 18 23 23 C 1.39074 * 119.68839 * 0.02562 * 22 21 19 24 24 C 1.38374 * 119.15117 * 179.97438 * 23 22 21 25 25 C 1.38756 * 118.54002 * 0.02562 * 24 23 22 26 26 C 1.38367 * 119.30477 * 359.97438 * 25 24 23 27 27 F 1.35102 * 119.60471 * 180.02562 * 26 25 24 28 28 N 1.32144 * 120.79182 * 359.74378 * 26 25 24 29 29 H 1.09005 * 109.46721 * 182.42685 * 1 2 3 30 30 H 1.08995 * 109.47223 * 302.42827 * 1 2 3 31 31 H 1.08998 * 109.46583 * 62.43312 * 1 2 3 32 32 H 1.09000 * 110.36335 * 86.08217 * 4 2 1 33 33 H 1.09004 * 110.45693 * 323.80235 * 4 2 1 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.88705 * 118.12543 * 18 5 4 38 38 H 1.09003 * 109.87834 * 239.29619 * 18 5 4 39 39 H 0.97002 * 119.99858 * 271.50209 * 21 19 18 40 40 H 1.08000 * 120.41780 * 359.97438 * 23 22 21 41 41 H 1.08008 * 120.72617 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.35001 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4272 -1.2428 -0.7736 6 6 4.4478 -1.5611 -1.5944 7 8 4.3010 -1.4991 -2.7967 8 6 5.7712 -1.9941 -1.0183 9 16 6.9281 -2.3491 -2.3643 10 6 8.3480 -2.8169 -1.4318 11 1 8.3090 -2.8182 -0.3525 12 6 9.5149 -3.1897 -2.0845 13 7 9.5623 -3.1886 -3.4000 14 14 11.0179 -3.6932 -1.0961 15 1 10.7077 -3.6096 0.3537 16 1 11.3941 -5.0873 -1.4427 17 1 12.1470 -2.7823 -1.4135 18 6 3.4658 -1.2797 0.6956 19 6 2.0861 -0.8083 1.2020 20 1 2.1892 -0.1714 2.0805 21 7 1.2268 -1.9579 1.4956 22 6 1.2054 -2.5009 2.7750 23 6 2.0021 -1.9474 3.7715 24 6 1.9718 -2.4964 5.0413 25 6 1.1432 -3.5850 5.2733 26 6 0.3767 -4.0859 4.2360 27 9 -0.4325 -5.1453 4.4552 28 7 0.4225 -3.5370 3.0348 29 1 -0.3633 -1.0268 0.0435 30 1 -0.3633 0.5510 0.8674 31 1 -0.3632 0.4756 -0.9110 32 1 2.1561 -0.1713 -2.0836 33 1 1.4525 -1.6700 -1.4048 34 1 5.6289 -2.8908 -0.4150 35 1 6.1741 -1.1965 -0.3941 36 1 10.3779 -3.4489 -3.8560 37 1 3.6601 -2.2967 1.0360 38 1 4.2424 -0.6088 1.0629 39 1 0.6727 -2.3401 0.7971 40 1 2.6362 -1.0999 3.5570 41 1 2.5803 -2.0871 5.8342 42 1 1.0971 -4.0367 6.2532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112306302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:59 Heat of formation + Delta-G solvation = -25.759693 kcal Electronic energy + Delta-G solvation = -26274.580116 eV Core-core repulsion = 22295.845872 eV Total energy + Delta-G solvation = -3978.734244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.25670 -40.88140 -39.85594 -37.97800 -34.96991 -33.10786 -32.80553 -32.45042 -29.95283 -29.54037 -28.58891 -26.24694 -25.44244 -24.08370 -23.69985 -22.70219 -20.37747 -19.49180 -18.73771 -17.94386 -17.69203 -16.75852 -16.51874 -16.34528 -16.33133 -15.78748 -15.34709 -15.18680 -14.82594 -14.38171 -14.37397 -13.95843 -13.80902 -13.71711 -13.45794 -13.22360 -13.01714 -12.78417 -12.67259 -12.44882 -12.34098 -11.97707 -11.74646 -11.37700 -11.13639 -11.08772 -11.03364 -10.77643 -10.73140 -10.05669 -10.03588 -9.83116 -9.47822 -9.09531 -8.61694 -8.26298 -8.17664 -6.53117 -6.24009 -3.94885 0.73419 0.96154 2.42265 2.83458 2.99899 3.20022 3.23932 3.29411 3.35537 3.54730 3.59483 3.88647 4.15580 4.18299 4.26251 4.41167 4.49018 4.75213 4.80003 4.87029 4.88859 4.98616 5.00094 5.11316 5.25335 5.32637 5.36422 5.38765 5.47679 5.49397 5.56429 5.65271 5.71053 5.80998 5.84439 5.87950 6.09192 6.13886 6.29731 6.52496 7.03485 7.55681 7.56944 7.58109 8.33106 8.48458 9.21437 10.83506 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.002714 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.710492 B =10315.049641 C =12094.868088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.103 0.897 4 C 0.109 3.891 5 N -0.625 5.625 6 C 0.549 3.451 7 O -0.513 6.513 8 C -0.147 4.147 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.086 3.914 19 C 0.144 3.856 20 H 0.109 0.891 21 N -0.707 5.707 22 C 0.443 3.557 23 C -0.251 4.251 24 C -0.005 4.005 25 C -0.257 4.257 26 C 0.356 3.644 27 F -0.114 7.114 28 N -0.577 5.577 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.409 0.591 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 6.762 18.021 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.121 0.879 4 C -0.014 4.014 5 N -0.363 5.363 6 C 0.338 3.662 7 O -0.387 6.387 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.040 4.040 19 C 0.037 3.963 20 H 0.127 0.873 21 N -0.339 5.339 22 C 0.207 3.793 23 C -0.276 4.276 24 C -0.031 4.031 25 C -0.281 4.281 26 C 0.202 3.798 27 F -0.093 7.093 28 N -0.301 5.301 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.247 0.753 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -20.159 6.569 15.331 26.165 hybrid contribution 1.278 -0.614 2.431 2.814 sum -18.881 5.955 17.762 26.598 Atomic orbital electron populations 1.21650 0.93072 1.02439 1.02599 1.22694 0.96950 0.99813 0.93509 0.87870 1.22254 0.83570 0.98101 0.97495 1.48439 1.12204 1.69457 1.06173 1.20037 0.84035 0.76051 0.86061 1.90717 1.82288 1.51384 1.14277 1.23507 0.96240 1.03828 1.06152 1.85412 1.05056 1.87344 1.05585 1.22890 0.98037 1.52551 0.94801 0.90890 1.25001 0.98512 0.94931 0.95155 1.70031 1.28121 1.45011 1.07076 0.86110 0.81304 0.78325 0.79722 1.19606 1.20536 1.20538 1.22594 0.97319 1.02598 0.81443 1.22065 0.88800 0.86551 0.98836 0.87284 1.44629 1.47630 1.33512 1.08158 1.17777 0.88242 0.87089 0.86237 1.21491 1.06447 1.05919 0.93704 1.21207 0.93593 0.92004 0.96251 1.21496 1.03665 1.02612 1.00356 1.17651 0.88563 0.84499 0.89043 1.91630 1.70746 1.52763 1.94148 1.66201 1.26789 1.14214 1.22915 0.92212 0.91842 0.91637 0.89855 0.91703 0.89395 0.89278 0.92210 0.90596 0.90104 0.75318 0.84088 0.83765 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.98 37.16 0.33 -0.44 16 2 C -0.11 -0.73 3.51 -88.47 -0.31 -1.04 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.11 1.15 6.33 -2.53 -0.02 1.13 16 5 N -0.62 -8.37 3.33 -170.51 -0.57 -8.93 16 6 C 0.55 10.37 7.87 -10.99 -0.09 10.28 16 7 O -0.51 -11.73 16.12 5.56 0.09 -11.64 16 8 C -0.15 -2.98 5.35 36.00 0.19 -2.78 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.53 -15.18 9.50 30.94 0.29 -14.88 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.11 13.22 55.49 0.73 -25.37 16 14 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 C 0.09 0.83 6.23 -3.06 -0.02 0.81 16 19 C 0.14 0.97 2.80 -66.09 -0.19 0.78 16 20 H 0.11 0.50 6.34 -51.93 -0.33 0.17 16 21 N -0.71 -5.65 4.57 -52.16 -0.24 -5.89 16 22 C 0.44 4.14 7.65 -155.01 -1.19 2.96 16 23 C -0.25 -1.82 9.24 -39.22 -0.36 -2.19 16 24 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 25 C -0.26 -2.02 10.08 -39.34 -0.40 -2.41 16 26 C 0.36 3.77 8.41 -17.37 -0.15 3.63 16 27 F -0.11 -1.27 17.29 2.25 0.04 -1.23 16 28 N -0.58 -6.64 10.40 -12.77 -0.13 -6.77 16 29 H 0.06 0.35 6.27 -51.93 -0.33 0.03 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 33 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.41 3.44 7.17 -40.82 -0.29 3.15 16 40 H 0.14 0.72 6.17 -52.49 -0.32 0.40 16 41 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -35.61 369.12 -9.58 -45.19 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.45 Total: -0.75 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.38 Total: -2.60 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.20 Total: -46.96 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.61 -9.58 -45.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.432 kcal (2) G-P(sol) polarization free energy of solvation -35.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds