Wall clock time and date at job start Tue Mar 31 2020 23:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.88475 * 2 1 4 4 C 1.54908 * 111.00553 * 236.11522 * 2 1 3 5 5 N 1.47426 * 104.83176 * 204.91634 * 4 2 1 6 6 C 1.34778 * 125.64903 * 204.08949 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48496 * 109.47187 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99999 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00046 * 14 12 10 18 18 C 1.47021 * 108.70439 * 24.36014 * 5 4 2 19 19 C 1.54340 * 107.26360 * 358.58153 * 18 5 4 20 20 H 1.09000 * 111.00235 * 219.60023 * 19 18 5 21 21 N 1.46498 * 110.51563 * 96.45507 * 19 18 5 22 22 C 1.39001 * 119.99990 * 91.49677 * 21 19 18 23 23 C 1.39074 * 119.68839 * 0.02562 * 22 21 19 24 24 C 1.38374 * 119.15117 * 179.97438 * 23 22 21 25 25 C 1.38756 * 118.54002 * 0.02562 * 24 23 22 26 26 C 1.38367 * 119.30477 * 359.97438 * 25 24 23 27 27 F 1.35102 * 119.60471 * 180.02562 * 26 25 24 28 28 N 1.32144 * 120.79182 * 359.74378 * 26 25 24 29 29 H 1.09005 * 109.46721 * 182.42685 * 1 2 3 30 30 H 1.08995 * 109.47223 * 302.42827 * 1 2 3 31 31 H 1.08998 * 109.46583 * 62.43312 * 1 2 3 32 32 H 1.09000 * 110.36335 * 86.08217 * 4 2 1 33 33 H 1.09004 * 110.45693 * 323.80235 * 4 2 1 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.88705 * 118.12543 * 18 5 4 38 38 H 1.09003 * 109.87834 * 239.29619 * 18 5 4 39 39 H 0.97002 * 119.99858 * 271.50209 * 21 19 18 40 40 H 1.08000 * 120.41780 * 359.97438 * 23 22 21 41 41 H 1.08008 * 120.72617 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.35001 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4272 -1.2428 -0.7736 6 6 4.4478 -1.5611 -1.5944 7 8 4.3010 -1.4991 -2.7967 8 6 5.7712 -1.9941 -1.0183 9 16 6.9281 -2.3491 -2.3643 10 6 8.3480 -2.8169 -1.4318 11 1 8.3090 -2.8182 -0.3525 12 6 9.5149 -3.1897 -2.0845 13 7 9.5623 -3.1886 -3.4000 14 14 11.0179 -3.6932 -1.0961 15 1 10.7077 -3.6096 0.3537 16 1 11.3941 -5.0873 -1.4427 17 1 12.1470 -2.7823 -1.4135 18 6 3.4658 -1.2797 0.6956 19 6 2.0861 -0.8083 1.2020 20 1 2.1892 -0.1714 2.0805 21 7 1.2268 -1.9579 1.4956 22 6 1.2054 -2.5009 2.7750 23 6 2.0021 -1.9474 3.7715 24 6 1.9718 -2.4964 5.0413 25 6 1.1432 -3.5850 5.2733 26 6 0.3767 -4.0859 4.2360 27 9 -0.4325 -5.1453 4.4552 28 7 0.4225 -3.5370 3.0348 29 1 -0.3633 -1.0268 0.0435 30 1 -0.3633 0.5510 0.8674 31 1 -0.3632 0.4756 -0.9110 32 1 2.1561 -0.1713 -2.0836 33 1 1.4525 -1.6700 -1.4048 34 1 5.6289 -2.8908 -0.4150 35 1 6.1741 -1.1965 -0.3941 36 1 10.3779 -3.4489 -3.8560 37 1 3.6601 -2.2967 1.0360 38 1 4.2424 -0.6088 1.0629 39 1 0.6727 -2.3401 0.7971 40 1 2.6362 -1.0999 3.5570 41 1 2.5803 -2.0871 5.8342 42 1 1.0971 -4.0367 6.2532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112306302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:58 Heat of formation + Delta-G solvation = -49.440621 kcal Electronic energy + Delta-G solvation = -26275.606998 eV Core-core repulsion = 22295.845872 eV Total energy + Delta-G solvation = -3979.761126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.00175 -41.63640 -40.78254 -39.12160 -35.81112 -34.60033 -33.91480 -33.44319 -30.98737 -30.61180 -29.29208 -27.77347 -26.96073 -24.80828 -24.33190 -23.44455 -21.03173 -20.79564 -19.68528 -19.24531 -18.64469 -18.01917 -17.44968 -17.08434 -16.95201 -16.89681 -16.67727 -16.48256 -16.14330 -15.74879 -15.29158 -15.03838 -14.73225 -14.54721 -14.46481 -14.07196 -14.03967 -13.78043 -13.51437 -13.46807 -13.28118 -13.16463 -12.92280 -12.89377 -12.63799 -12.40963 -11.95870 -11.76548 -11.68143 -11.33900 -11.17138 -11.01167 -10.70094 -10.65484 -10.30053 -9.75504 -8.78524 -8.70038 -8.36220 -6.15078 0.10899 0.40032 1.22443 1.41114 1.44073 1.52668 1.56294 1.83028 2.06364 2.25786 2.74036 2.94749 2.98225 3.14242 3.34111 3.46487 3.74923 3.80821 3.86519 3.93916 4.16882 4.19081 4.25760 4.28686 4.37341 4.41021 4.48018 4.59721 4.65719 4.74680 4.78646 4.81303 5.01402 5.02414 5.14341 5.24909 5.29810 5.39399 5.40498 5.56406 5.94408 6.18498 6.31696 6.39826 6.94214 7.05059 7.07699 8.73369 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011208 B = 0.002714 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.710492 B =10315.049641 C =12094.868088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 H 0.122 0.878 4 C 0.100 3.900 5 N -0.614 5.614 6 C 0.546 3.454 7 O -0.567 6.567 8 C -0.119 4.119 9 S -0.153 6.153 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.272 1.272 18 C 0.075 3.925 19 C 0.156 3.844 20 H 0.147 0.853 21 N -0.708 5.708 22 C 0.426 3.574 23 C -0.244 4.244 24 C -0.001 4.001 25 C -0.251 4.251 26 C 0.321 3.679 27 F -0.129 7.129 28 N -0.614 5.614 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.403 0.597 40 H 0.170 0.830 41 H 0.182 0.818 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.385 8.316 21.805 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.140 0.860 4 C -0.022 4.022 5 N -0.348 5.348 6 C 0.334 3.666 7 O -0.445 6.445 8 C -0.270 4.270 9 S 0.074 5.926 10 C -0.692 4.692 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.178 1.178 16 H -0.201 1.201 17 H -0.198 1.198 18 C -0.048 4.048 19 C 0.050 3.950 20 H 0.164 0.836 21 N -0.340 5.340 22 C 0.190 3.810 23 C -0.269 4.269 24 C -0.027 4.027 25 C -0.275 4.275 26 C 0.169 3.831 27 F -0.108 7.108 28 N -0.338 5.338 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.122 0.878 39 H 0.240 0.760 40 H 0.187 0.813 41 H 0.199 0.801 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -19.882 8.134 19.182 28.799 hybrid contribution 1.042 -1.072 1.310 1.987 sum -18.840 7.062 20.491 28.717 Atomic orbital electron populations 1.21625 0.91962 1.02326 1.03403 1.22649 0.97580 0.99836 0.91082 0.86044 1.22501 0.82094 0.98482 0.99112 1.48345 1.11795 1.66957 1.07739 1.19764 0.84718 0.76366 0.85755 1.90693 1.83217 1.54142 1.16468 1.23292 0.95363 1.05066 1.03275 1.85611 1.07973 1.87923 1.11056 1.23213 0.98266 1.52538 0.95180 0.89867 1.26155 1.02158 0.94598 0.96290 1.70196 1.29250 1.46155 1.09220 0.84887 0.76503 0.77867 0.78584 1.17848 1.20080 1.19774 1.22978 1.00194 1.02971 0.78695 1.22151 0.86657 0.86271 0.99951 0.83589 1.44703 1.47652 1.33872 1.07788 1.18091 0.88729 0.87110 0.87094 1.21864 1.05561 1.06135 0.93326 1.21687 0.92989 0.91003 0.96973 1.21806 1.02684 1.02676 1.00353 1.18047 0.90000 0.85185 0.89901 1.91583 1.71404 1.53566 1.94244 1.66078 1.28277 1.15575 1.23913 0.92892 0.90384 0.91403 0.91341 0.91932 0.88231 0.87048 0.91975 0.91427 0.87849 0.75956 0.81284 0.80096 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.98 71.98 0.65 -0.50 16 2 C -0.09 -0.95 3.51 -9.40 -0.03 -0.98 16 3 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 4 C 0.10 2.03 6.33 86.85 0.55 2.58 16 5 N -0.61 -15.73 3.33 -811.77 -2.70 -18.43 16 6 C 0.55 20.74 7.87 87.66 0.69 21.43 16 7 O -0.57 -27.01 16.12 -3.02 -0.05 -27.06 16 8 C -0.12 -4.79 5.35 71.23 0.38 -4.41 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.54 -31.05 9.50 67.96 0.65 -30.40 16 11 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 14 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 15 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 16 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 C 0.08 1.22 6.23 86.73 0.54 1.76 16 19 C 0.16 1.52 2.80 46.19 0.13 1.65 16 20 H 0.15 0.47 6.34 -2.39 -0.02 0.46 16 21 N -0.71 -9.78 4.57 -318.92 -1.46 -11.24 16 22 C 0.43 7.08 7.65 133.04 1.02 8.09 16 23 C -0.24 -2.60 9.24 22.50 0.21 -2.39 16 24 C 0.00 -0.01 10.16 22.43 0.23 0.21 16 25 C -0.25 -3.38 10.08 22.42 0.23 -3.16 16 26 C 0.32 6.68 8.41 84.68 0.71 7.39 16 27 F -0.13 -2.95 17.29 44.97 0.78 -2.18 16 28 N -0.61 -13.85 10.40 -194.33 -2.02 -15.87 16 29 H 0.05 0.54 6.27 -2.38 -0.01 0.53 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 33 H 0.06 1.31 8.04 -2.38 -0.02 1.29 16 34 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 37 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.40 6.40 7.17 -92.71 -0.66 5.73 16 40 H 0.17 0.74 6.17 -2.91 -0.02 0.73 16 41 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -83.00 369.12 2.50 -80.50 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.39 Total: 11.98 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.41 Total: 2.47 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.89 Total: -101.36 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -83.00 2.50 -80.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.061 kcal (2) G-P(sol) polarization free energy of solvation -83.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds