Wall clock time and date at job start Tue Mar 31 2020 23:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.63826 * 2 1 4 4 C 1.54318 * 110.71741 * 123.14308 * 2 1 3 5 5 N 1.47027 * 107.26661 * 140.55763 * 4 2 1 6 6 C 1.34776 * 125.64365 * 181.02168 * 5 4 2 7 7 O 1.21280 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99564 * 180.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47420 * 108.70504 * 1.28739 * 5 4 2 19 19 C 1.55132 * 104.72197 * 335.55391 * 18 5 4 20 20 H 1.09003 * 111.18764 * 279.19099 * 19 18 5 21 21 N 1.46497 * 110.93821 * 155.28937 * 19 18 5 22 22 C 1.38995 * 120.00021 * 92.95812 * 21 19 18 23 23 C 1.39071 * 119.68756 * 359.97438 * 22 21 19 24 24 C 1.38383 * 119.15711 * 179.97438 * 23 22 21 25 25 C 1.38759 * 118.53327 * 359.97438 * 24 23 22 26 26 C 1.38372 * 119.30417 * 0.02562 * 25 24 23 27 27 F 1.35102 * 119.60333 * 179.97438 * 26 25 24 28 28 N 1.32138 * 120.79409 * 359.74634 * 26 25 24 29 29 H 1.09003 * 109.47351 * 298.30992 * 1 2 3 30 30 H 1.09008 * 109.47251 * 58.30756 * 1 2 3 31 31 H 1.08992 * 109.47292 * 178.30948 * 1 2 3 32 32 H 1.08996 * 109.88275 * 21.14280 * 4 2 1 33 33 H 1.08999 * 109.88502 * 259.97203 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.09000 * 110.36756 * 94.48477 * 18 5 4 38 38 H 1.08995 * 110.36742 * 216.80663 * 18 5 4 39 39 H 0.97001 * 119.99845 * 272.95155 * 21 19 18 40 40 H 1.08001 * 120.42686 * 359.95320 * 23 22 21 41 41 H 1.08000 * 120.73278 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.34551 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2445 -1.5495 0.7415 6 6 3.9922 -2.3810 1.4937 7 8 3.7197 -2.5513 2.6631 8 6 5.1678 -3.0985 0.8818 9 16 5.9628 -4.1332 2.1363 10 6 7.2629 -4.8342 1.1757 11 1 7.3662 -4.5715 0.1333 12 6 8.1544 -5.7241 1.7588 13 7 8.0288 -6.0439 3.0294 14 14 9.5331 -6.4668 0.7406 15 1 9.4565 -5.9490 -0.6492 16 1 9.3963 -7.9454 0.7256 17 1 10.8425 -6.0969 1.3356 18 6 3.4666 -1.2466 -0.6841 19 6 2.0789 -0.7974 -1.2125 20 1 1.4452 -1.6559 -1.4348 21 7 2.2206 0.0656 -2.3878 22 6 2.1853 -0.4859 -3.6632 23 6 2.0156 -1.8578 -3.8160 24 6 1.9814 -2.3951 -5.0908 25 6 2.1181 -1.5394 -6.1746 26 6 2.2838 -0.1840 -5.9507 27 9 2.4180 0.6545 -7.0015 28 7 2.3080 0.3006 -4.7217 29 1 -0.3634 0.4874 0.9048 30 1 -0.3634 0.5399 -0.8745 31 1 -0.3633 -1.0271 -0.0303 32 1 1.3129 -1.4732 1.5799 33 1 2.3740 -0.0991 1.9979 34 1 5.8840 -2.3679 0.5059 35 1 4.8229 -3.7256 0.0596 36 1 7.3131 -5.6580 3.5583 37 1 4.1947 -0.4427 -0.7921 38 1 3.8031 -2.1381 -1.2133 39 1 2.3390 1.0218 -2.2760 40 1 1.9121 -2.4958 -2.9507 41 1 1.8513 -3.4569 -5.2389 42 1 2.0953 -1.9273 -7.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112306303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:02 Heat of formation + Delta-G solvation = -35.135167 kcal Electronic energy + Delta-G solvation = -26166.775041 eV Core-core repulsion = 22187.634246 eV Total energy + Delta-G solvation = -3979.140795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.29901 -40.83422 -39.95037 -38.01347 -35.26492 -33.20589 -32.87772 -32.56606 -30.13996 -29.67136 -28.37121 -26.28472 -24.84437 -24.15186 -23.85583 -22.31472 -20.92551 -19.58079 -18.62911 -18.27600 -17.96636 -16.84427 -16.81994 -16.39798 -16.36783 -15.79912 -15.48731 -15.14307 -14.56793 -14.36792 -14.27053 -13.89061 -13.83513 -13.67404 -13.64687 -13.47250 -13.21742 -12.81719 -12.56120 -12.43857 -12.40973 -12.04952 -11.92774 -11.82668 -11.51765 -11.16476 -10.92690 -10.71806 -10.23172 -10.10877 -10.07368 -9.64295 -9.61476 -9.04676 -8.73753 -8.26735 -8.22817 -6.72132 -6.65840 -4.04395 0.69622 0.92194 2.26412 2.74187 2.86470 3.29290 3.31533 3.38079 3.38263 3.51518 3.55156 3.87631 4.10640 4.20849 4.22558 4.35334 4.44455 4.66232 4.77318 4.81937 4.83986 4.86409 4.93840 5.18704 5.23142 5.27982 5.32713 5.34661 5.42154 5.44407 5.46809 5.60294 5.61440 5.70847 5.79206 5.82660 5.94213 6.08301 6.19077 6.46527 6.97091 7.42244 7.50916 7.89518 8.34248 8.46682 9.23253 10.78219 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.002796 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.426629 B =10012.746453 C =12294.682602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.093 0.907 4 C 0.115 3.885 5 N -0.624 5.624 6 C 0.549 3.451 7 O -0.512 6.512 8 C -0.125 4.125 9 S -0.116 6.116 10 C -0.607 4.607 11 H 0.067 0.933 12 C 0.036 3.964 13 N -0.885 5.885 14 Si 1.090 2.910 15 H -0.288 1.288 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.086 3.914 19 C 0.144 3.856 20 H 0.107 0.893 21 N -0.706 5.706 22 C 0.441 3.559 23 C -0.249 4.249 24 C -0.004 4.004 25 C -0.254 4.254 26 C 0.355 3.645 27 F -0.114 7.114 28 N -0.577 5.577 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.278 0.722 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.409 0.591 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 12.539 -16.308 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.111 0.889 4 C -0.009 4.009 5 N -0.362 5.362 6 C 0.337 3.663 7 O -0.385 6.385 8 C -0.276 4.276 9 S 0.110 5.890 10 C -0.755 4.755 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.916 3.084 15 H -0.214 1.214 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.040 4.040 19 C 0.037 3.963 20 H 0.125 0.875 21 N -0.338 5.338 22 C 0.205 3.795 23 C -0.274 4.274 24 C -0.030 4.030 25 C -0.278 4.278 26 C 0.201 3.799 27 F -0.093 7.093 28 N -0.301 5.301 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.246 0.754 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.010 11.971 -14.191 24.516 hybrid contribution -0.809 1.090 -1.979 2.400 sum -16.819 13.061 -16.171 26.739 Atomic orbital electron populations 1.21768 0.92920 1.02713 1.02577 1.22500 0.97180 0.99808 0.93224 0.88918 1.21947 0.88168 0.94751 0.96010 1.48350 1.30917 1.46191 1.10779 1.20021 0.82674 0.77758 0.85854 1.90722 1.69671 1.62276 1.15853 1.23301 0.97517 1.02286 1.04492 1.84835 1.35381 1.53840 1.14918 1.23746 1.17072 1.34893 0.99789 0.91519 1.26060 1.00026 0.94164 0.97247 1.70740 1.32699 1.41583 1.06850 0.83252 0.74770 0.76292 0.74094 1.21381 1.20842 1.20848 1.22809 0.97314 1.01929 0.81928 1.22316 0.96096 0.93952 0.83900 0.87515 1.44364 1.78450 1.10321 1.00669 1.17758 0.88979 0.88127 0.84633 1.21533 1.12367 0.94135 0.99328 1.21244 0.90609 1.00307 0.90821 1.21521 1.12609 0.91905 1.01781 1.17638 0.94902 0.85407 0.81964 1.91629 1.92460 1.72342 1.52837 1.66182 1.24721 1.41236 0.97923 0.91657 0.91915 0.91950 0.90777 0.90971 0.89028 0.89003 0.90916 0.90637 0.89785 0.75396 0.84089 0.83621 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.13 37.16 0.34 -0.44 16 2 C -0.11 -0.71 3.19 -88.79 -0.28 -0.99 16 3 H 0.09 0.53 8.01 -51.93 -0.42 0.12 16 4 C 0.11 1.16 6.46 -3.06 -0.02 1.14 16 5 N -0.62 -8.12 3.32 -170.39 -0.57 -8.69 16 6 C 0.55 10.07 7.87 -10.98 -0.09 9.98 16 7 O -0.51 -11.39 16.19 5.56 0.09 -11.30 16 8 C -0.12 -2.50 5.16 36.01 0.19 -2.31 16 9 S -0.12 -3.09 19.60 -107.50 -2.11 -5.20 16 10 C -0.61 -17.31 9.50 30.94 0.29 -17.02 16 11 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 12 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 13 N -0.88 -27.32 13.67 55.49 0.76 -26.57 16 14 Si 1.09 24.84 29.92 -169.99 -5.09 19.75 16 15 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.09 0.83 6.40 -2.41 -0.02 0.82 16 19 C 0.14 1.02 2.59 -65.66 -0.17 0.85 16 20 H 0.11 0.71 6.22 -51.93 -0.32 0.38 16 21 N -0.71 -5.16 5.37 -51.75 -0.28 -5.44 16 22 C 0.44 4.03 7.65 -155.02 -1.19 2.84 16 23 C -0.25 -1.95 9.24 -39.22 -0.36 -2.32 16 24 C 0.00 -0.03 10.16 -39.34 -0.40 -0.43 16 25 C -0.25 -1.99 10.08 -39.34 -0.40 -2.39 16 26 C 0.35 3.63 8.40 -17.37 -0.15 3.48 16 27 F -0.11 -1.21 17.29 2.25 0.04 -1.17 16 28 N -0.58 -6.30 10.40 -12.78 -0.13 -6.44 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 32 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.69 7.85 -51.92 -0.41 1.28 16 36 H 0.28 8.78 7.13 -40.82 -0.29 8.49 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 39 H 0.41 2.74 8.69 -40.82 -0.35 2.38 16 40 H 0.14 0.92 6.16 -52.49 -0.32 0.60 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -35.46 370.50 -9.54 -45.00 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.50 Total: 0.30 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -2.34 Total: -5.85 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.22 Total: -47.12 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.46 -9.54 -45.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.862 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds