Wall clock time and date at job start Tue Mar 31 2020 23:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.63826 * 2 1 4 4 C 1.54318 * 110.71741 * 123.14308 * 2 1 3 5 5 N 1.47027 * 107.26661 * 140.55763 * 4 2 1 6 6 C 1.34776 * 125.64365 * 181.02168 * 5 4 2 7 7 O 1.21280 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99564 * 180.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47420 * 108.70504 * 1.28739 * 5 4 2 19 19 C 1.55132 * 104.72197 * 335.55391 * 18 5 4 20 20 H 1.09003 * 111.18764 * 279.19099 * 19 18 5 21 21 N 1.46497 * 110.93821 * 155.28937 * 19 18 5 22 22 C 1.38995 * 120.00021 * 92.95812 * 21 19 18 23 23 C 1.39071 * 119.68756 * 359.97438 * 22 21 19 24 24 C 1.38383 * 119.15711 * 179.97438 * 23 22 21 25 25 C 1.38759 * 118.53327 * 359.97438 * 24 23 22 26 26 C 1.38372 * 119.30417 * 0.02562 * 25 24 23 27 27 F 1.35102 * 119.60333 * 179.97438 * 26 25 24 28 28 N 1.32138 * 120.79409 * 359.74634 * 26 25 24 29 29 H 1.09003 * 109.47351 * 298.30992 * 1 2 3 30 30 H 1.09008 * 109.47251 * 58.30756 * 1 2 3 31 31 H 1.08992 * 109.47292 * 178.30948 * 1 2 3 32 32 H 1.08996 * 109.88275 * 21.14280 * 4 2 1 33 33 H 1.08999 * 109.88502 * 259.97203 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.09000 * 110.36756 * 94.48477 * 18 5 4 38 38 H 1.08995 * 110.36742 * 216.80663 * 18 5 4 39 39 H 0.97001 * 119.99845 * 272.95155 * 21 19 18 40 40 H 1.08001 * 120.42686 * 359.95320 * 23 22 21 41 41 H 1.08000 * 120.73278 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.34551 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2445 -1.5495 0.7415 6 6 3.9922 -2.3810 1.4937 7 8 3.7197 -2.5513 2.6631 8 6 5.1678 -3.0985 0.8818 9 16 5.9628 -4.1332 2.1363 10 6 7.2629 -4.8342 1.1757 11 1 7.3662 -4.5715 0.1333 12 6 8.1544 -5.7241 1.7588 13 7 8.0288 -6.0439 3.0294 14 14 9.5331 -6.4668 0.7406 15 1 9.4565 -5.9490 -0.6492 16 1 9.3963 -7.9454 0.7256 17 1 10.8425 -6.0969 1.3356 18 6 3.4666 -1.2466 -0.6841 19 6 2.0789 -0.7974 -1.2125 20 1 1.4452 -1.6559 -1.4348 21 7 2.2206 0.0656 -2.3878 22 6 2.1853 -0.4859 -3.6632 23 6 2.0156 -1.8578 -3.8160 24 6 1.9814 -2.3951 -5.0908 25 6 2.1181 -1.5394 -6.1746 26 6 2.2838 -0.1840 -5.9507 27 9 2.4180 0.6545 -7.0015 28 7 2.3080 0.3006 -4.7217 29 1 -0.3634 0.4874 0.9048 30 1 -0.3634 0.5399 -0.8745 31 1 -0.3633 -1.0271 -0.0303 32 1 1.3129 -1.4732 1.5799 33 1 2.3740 -0.0991 1.9979 34 1 5.8840 -2.3679 0.5059 35 1 4.8229 -3.7256 0.0596 36 1 7.3131 -5.6580 3.5583 37 1 4.1947 -0.4427 -0.7921 38 1 3.8031 -2.1381 -1.2133 39 1 2.3390 1.0218 -2.2760 40 1 1.9121 -2.4958 -2.9507 41 1 1.8513 -3.4569 -5.2389 42 1 2.0953 -1.9273 -7.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112306303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:02 Heat of formation + Delta-G solvation = -58.441080 kcal Electronic energy + Delta-G solvation = -26167.785662 eV Core-core repulsion = 22187.634246 eV Total energy + Delta-G solvation = -3980.151415 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02447 -41.61181 -40.89016 -39.12960 -36.06190 -34.76018 -34.06029 -33.51583 -31.11723 -30.78224 -29.11124 -27.37521 -26.81009 -24.88537 -24.51252 -23.04201 -21.58588 -20.93997 -20.17022 -19.25054 -18.68796 -18.12357 -17.70806 -17.10775 -17.03523 -16.98766 -16.51895 -16.20598 -16.08274 -15.71269 -15.13476 -15.02034 -14.73960 -14.63024 -14.48141 -14.39096 -14.22029 -14.06993 -13.95031 -13.62305 -13.38817 -13.21195 -12.94825 -12.76648 -12.49939 -12.15384 -11.93279 -11.76903 -11.57534 -11.34542 -11.12506 -11.11423 -10.76357 -10.70653 -10.34134 -9.85384 -8.93469 -8.89290 -8.84526 -6.29169 0.05276 0.33787 1.10184 1.41163 1.50650 1.61669 1.63107 1.78173 2.04760 2.32214 2.68096 2.87850 3.01672 3.07108 3.24416 3.38609 3.63613 3.70810 3.78383 3.86981 4.03526 4.08455 4.12565 4.24884 4.28313 4.28586 4.39799 4.53094 4.65147 4.70832 4.74496 4.79386 4.96049 4.96490 5.07288 5.19316 5.25439 5.33688 5.50018 5.63911 5.87367 6.14248 6.19958 6.36950 6.88870 6.96501 7.05180 8.50184 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.002796 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.426629 B =10012.746453 C =12294.682602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.107 0.893 4 C 0.108 3.892 5 N -0.611 5.611 6 C 0.548 3.452 7 O -0.562 6.562 8 C -0.102 4.102 9 S -0.193 6.193 10 C -0.612 4.612 11 H 0.074 0.926 12 C -0.018 4.018 13 N -0.913 5.913 14 Si 1.141 2.859 15 H -0.263 1.263 16 H -0.273 1.273 17 H -0.275 1.275 18 C 0.077 3.923 19 C 0.158 3.842 20 H 0.119 0.881 21 N -0.699 5.699 22 C 0.428 3.572 23 C -0.250 4.250 24 C -0.002 4.002 25 C -0.248 4.248 26 C 0.326 3.674 27 F -0.125 7.125 28 N -0.604 5.604 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.412 0.588 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.753 12.688 -18.816 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.125 0.875 4 C -0.014 4.014 5 N -0.346 5.346 6 C 0.336 3.664 7 O -0.440 6.440 8 C -0.253 4.253 9 S 0.034 5.966 10 C -0.759 4.759 11 H 0.092 0.908 12 C -0.221 4.221 13 N -0.549 5.549 14 Si 0.959 3.041 15 H -0.187 1.187 16 H -0.199 1.199 17 H -0.201 1.201 18 C -0.047 4.047 19 C 0.051 3.949 20 H 0.137 0.863 21 N -0.331 5.331 22 C 0.192 3.808 23 C -0.275 4.275 24 C -0.028 4.028 25 C -0.272 4.272 26 C 0.173 3.827 27 F -0.104 7.104 28 N -0.329 5.329 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.250 0.750 40 H 0.174 0.826 41 H 0.194 0.806 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.789 12.176 -16.755 26.662 hybrid contribution -0.691 1.146 -1.263 1.839 sum -17.479 13.322 -18.018 28.419 Atomic orbital electron populations 1.21749 0.91576 1.03019 1.03240 1.22435 0.98006 0.99729 0.90932 0.87521 1.22198 0.86934 0.94611 0.97672 1.48202 1.30341 1.44193 1.11890 1.19668 0.82780 0.78532 0.85438 1.90704 1.71019 1.64388 1.17867 1.23170 0.98091 1.01641 1.02405 1.85060 1.36437 1.55992 1.19140 1.24055 1.17172 1.34600 1.00089 0.90754 1.27814 1.02488 0.94418 0.97425 1.70861 1.32927 1.42966 1.08122 0.82660 0.71758 0.76035 0.73675 1.18722 1.19857 1.20098 1.23099 0.99389 1.02404 0.79799 1.22190 0.94389 0.94391 0.83913 0.86344 1.44279 1.78313 1.10418 1.00119 1.17976 0.89455 0.88695 0.84649 1.21803 1.11574 0.93747 1.00371 1.21652 0.89316 1.01676 0.90110 1.21802 1.11229 0.90926 1.03242 1.17985 0.96586 0.86309 0.81774 1.91595 1.92753 1.72812 1.53222 1.66093 1.25726 1.42438 0.98622 0.91138 0.91103 0.91874 0.90932 0.91502 0.87752 0.87069 0.92765 0.90098 0.89444 0.75027 0.82619 0.80613 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.13 71.98 0.66 -0.45 16 2 C -0.09 -0.96 3.19 -9.61 -0.03 -0.99 16 3 H 0.11 0.89 8.01 -2.39 -0.02 0.87 16 4 C 0.11 2.03 6.46 86.73 0.56 2.59 16 5 N -0.61 -14.97 3.32 -811.37 -2.70 -17.67 16 6 C 0.55 19.94 7.87 87.66 0.69 20.63 16 7 O -0.56 -25.59 16.19 -3.03 -0.05 -25.64 16 8 C -0.10 -4.00 5.16 71.24 0.37 -3.63 16 9 S -0.19 -10.54 19.60 -56.49 -1.11 -11.64 16 10 C -0.61 -34.91 9.50 67.95 0.65 -34.27 16 11 H 0.07 3.99 7.80 -2.91 -0.02 3.97 16 12 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16 13 N -0.91 -57.61 13.67 21.65 0.30 -57.31 16 14 Si 1.14 48.96 29.92 68.60 2.05 51.01 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 18 C 0.08 1.31 6.40 86.93 0.56 1.87 16 19 C 0.16 1.78 2.59 46.46 0.12 1.90 16 20 H 0.12 1.14 6.22 -2.39 -0.01 1.12 16 21 N -0.70 -8.45 5.37 -317.64 -1.71 -10.15 16 22 C 0.43 6.90 7.65 133.04 1.02 7.91 16 23 C -0.25 -3.18 9.24 22.50 0.21 -2.98 16 24 C 0.00 -0.03 10.16 22.43 0.23 0.20 16 25 C -0.25 -3.34 10.08 22.43 0.23 -3.11 16 26 C 0.33 6.34 8.40 84.68 0.71 7.05 16 27 F -0.12 -2.62 17.29 44.97 0.78 -1.84 16 28 N -0.60 -12.51 10.40 -194.33 -2.02 -14.53 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 32 H 0.07 1.42 7.82 -2.39 -0.02 1.40 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 3.82 8.14 -2.40 -0.02 3.80 16 35 H 0.11 3.92 7.85 -2.40 -0.02 3.90 16 36 H 0.26 17.14 7.13 -92.70 -0.66 16.48 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.47 7.48 -2.39 -0.02 1.45 16 39 H 0.41 4.56 8.69 -92.71 -0.81 3.75 16 40 H 0.16 1.46 6.16 -2.91 -0.02 1.44 16 41 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -80.11 370.50 2.33 -77.78 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.36 Total: 13.85 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.42 Total: -3.85 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -6.13 Total: -99.67 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.05 Total: 51.01 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.11 Total: -11.64 kcal Total: -80.11 2.33 -77.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.337 kcal (2) G-P(sol) polarization free energy of solvation -80.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds