Wall clock time and date at job start Tue Mar 31 2020 23:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64763 * 2 1 4 4 C 1.54325 * 110.71774 * 123.14566 * 2 1 3 5 5 N 1.47023 * 107.27284 * 140.55371 * 4 2 1 6 6 C 1.34778 * 125.64979 * 181.01769 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00123 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00074 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99873 * 14 12 10 18 18 C 1.47422 * 108.70279 * 1.28568 * 5 4 2 19 19 C 1.55131 * 104.72363 * 335.55352 * 18 5 4 20 20 H 1.09001 * 110.94061 * 155.28880 * 19 18 5 21 21 N 1.46500 * 111.19092 * 279.19199 * 19 18 5 22 22 C 1.38995 * 119.99815 * 267.18568 * 21 19 18 23 23 C 1.39061 * 119.68947 * 359.97438 * 22 21 19 24 24 C 1.38384 * 119.15368 * 179.97438 * 23 22 21 25 25 C 1.38755 * 118.53505 * 0.02562 * 24 23 22 26 26 C 1.38367 * 119.30870 * 359.97438 * 25 24 23 27 27 F 1.35093 * 119.60723 * 179.97438 * 26 25 24 28 28 N 1.32142 * 120.79094 * 359.75367 * 26 25 24 29 29 H 1.08998 * 109.47007 * 298.31302 * 1 2 3 30 30 H 1.09006 * 109.47001 * 58.31249 * 1 2 3 31 31 H 1.08994 * 109.47507 * 178.30965 * 1 2 3 32 32 H 1.08998 * 109.88499 * 21.13306 * 4 2 1 33 33 H 1.09002 * 110.00828 * 260.04040 * 4 2 1 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 1.09003 * 110.36588 * 94.47991 * 18 5 4 38 38 H 1.09004 * 110.36868 * 216.80396 * 18 5 4 39 39 H 0.97002 * 120.00247 * 87.18457 * 21 19 18 40 40 H 1.07998 * 120.42720 * 359.95588 * 23 22 21 41 41 H 1.08005 * 120.73094 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.34475 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7892 1.2086 5 7 3.2444 -1.5496 0.7416 6 6 3.9922 -2.3812 1.4938 7 8 3.7191 -2.5520 2.6630 8 6 5.1677 -3.0988 0.8820 9 16 5.9626 -4.1333 2.1365 10 6 7.2627 -4.8345 1.1759 11 1 7.3660 -4.5719 0.1334 12 6 8.1579 -5.7196 1.7606 13 7 8.0323 -6.0392 3.0314 14 14 9.5409 -6.4569 0.7442 15 1 10.7371 -5.5808 0.8265 16 1 9.8773 -7.8045 1.2698 17 1 9.1078 -6.5717 -0.6716 18 6 3.4665 -1.2469 -0.6840 19 6 2.0789 -0.7976 -1.2125 20 1 2.1844 -0.1555 -2.0870 21 7 1.2270 -1.9514 -1.5112 22 6 1.2017 -2.4825 -2.7954 23 6 1.9872 -1.9133 -3.7918 24 6 1.9538 -2.4514 -5.0663 25 6 1.1326 -3.5445 -5.3030 26 6 0.3770 -4.0613 -4.2655 27 9 -0.4250 -5.1251 -4.4893 28 7 0.4337 -3.5294 -3.0572 29 1 -0.3633 0.4874 0.9047 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3634 -1.0271 -0.0303 32 1 1.3129 -1.4732 1.5800 33 1 2.3736 -0.1011 1.9998 34 1 5.8838 -2.3682 0.5060 35 1 4.8227 -3.7258 0.0598 36 1 8.6578 -6.6580 3.4398 37 1 4.1947 -0.4429 -0.7921 38 1 3.8031 -2.1384 -1.2132 39 1 0.6807 -2.3447 -0.8128 40 1 2.6150 -1.0620 -3.5739 41 1 2.5531 -2.0292 -5.8595 42 1 1.0844 -3.9879 -6.2867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112306304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:06 Heat of formation + Delta-G solvation = -26.091903 kcal Electronic energy + Delta-G solvation = -26525.413484 eV Core-core repulsion = 22546.664835 eV Total energy + Delta-G solvation = -3978.748649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.18775 -40.83169 -39.82422 -37.93380 -34.90324 -33.09035 -32.77121 -32.43816 -29.91215 -29.52105 -28.59193 -26.22084 -25.42810 -24.06100 -23.67307 -22.59462 -20.35113 -19.51835 -18.63410 -17.91038 -17.66823 -16.70112 -16.61186 -16.29512 -16.25813 -15.74773 -15.42041 -14.90594 -14.81157 -14.47532 -14.31806 -13.94494 -13.76552 -13.59089 -13.40872 -13.27435 -13.04173 -12.77661 -12.60951 -12.45638 -12.26079 -11.99421 -11.68677 -11.34092 -11.16989 -11.06847 -11.03118 -10.77382 -10.68409 -9.98666 -9.98205 -9.82831 -9.45935 -9.07569 -8.62408 -8.25360 -8.08691 -6.51765 -6.22631 -3.93534 0.79450 1.02181 2.48971 2.84386 3.01659 3.21563 3.24692 3.29593 3.41446 3.57239 3.64404 3.90445 4.15358 4.19559 4.30893 4.42135 4.53000 4.78474 4.83659 4.89067 4.92181 4.99922 5.01524 5.12603 5.25201 5.34604 5.38751 5.41883 5.47887 5.52498 5.57193 5.65900 5.71528 5.83664 5.87718 5.89400 6.10088 6.18785 6.33563 6.58709 7.10229 7.56687 7.58921 7.63885 8.34058 8.50403 9.22635 10.84855 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.003176 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.461272 B = 8814.790463 C =10843.244672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 H 0.103 0.897 4 C 0.109 3.891 5 N -0.624 5.624 6 C 0.549 3.451 7 O -0.513 6.513 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.083 3.917 19 C 0.142 3.858 20 H 0.110 0.890 21 N -0.703 5.703 22 C 0.444 3.556 23 C -0.252 4.252 24 C -0.005 4.005 25 C -0.258 4.258 26 C 0.358 3.642 27 F -0.113 7.113 28 N -0.577 5.577 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.269 0.731 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.410 0.590 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 15.157 -17.055 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 H 0.121 0.879 4 C -0.014 4.014 5 N -0.362 5.362 6 C 0.338 3.662 7 O -0.387 6.387 8 C -0.297 4.297 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.042 4.042 19 C 0.035 3.965 20 H 0.128 0.872 21 N -0.335 5.335 22 C 0.207 3.793 23 C -0.277 4.277 24 C -0.031 4.031 25 C -0.282 4.282 26 C 0.204 3.796 27 F -0.092 7.092 28 N -0.300 5.300 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.248 0.752 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.915 14.484 -14.411 25.899 hybrid contribution 1.358 -0.433 -2.375 2.769 sum -14.558 14.050 -16.786 26.289 Atomic orbital electron populations 1.21706 0.93160 1.02514 1.02490 1.22555 0.97157 0.99683 0.93346 0.87922 1.21979 0.88362 0.94763 0.96274 1.48431 1.30728 1.46224 1.10805 1.20034 0.82705 0.77652 0.85827 1.90716 1.69762 1.62214 1.15984 1.23498 0.97738 1.02803 1.05615 1.85403 1.33703 1.52260 1.11944 1.22850 1.15172 1.31698 0.98645 0.90972 1.24990 0.97647 0.95636 0.95244 1.70021 1.36449 1.32914 1.10863 0.86170 0.81083 0.78424 0.79851 1.20234 1.20707 1.19681 1.22915 0.96751 1.02010 0.82499 1.22226 0.89340 0.86617 0.98326 0.87228 1.44501 1.48087 1.33226 1.07737 1.17775 0.88331 0.86977 0.86192 1.21462 1.06664 1.05933 0.93659 1.21192 0.93528 0.92136 0.96218 1.21489 1.03857 1.02490 1.00355 1.17654 0.88644 0.84414 0.88914 1.91628 1.71074 1.52480 1.94064 1.66210 1.26880 1.14263 1.22668 0.91721 0.91868 0.92187 0.91384 0.91095 0.89342 0.89470 0.92161 0.90022 0.89792 0.75246 0.84148 0.83816 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.80 37.16 0.33 -0.48 16 2 C -0.11 -0.69 3.42 -88.78 -0.30 -0.99 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.11 1.15 6.45 -3.06 -0.02 1.13 16 5 N -0.62 -8.38 3.32 -170.38 -0.57 -8.95 16 6 C 0.55 10.50 7.87 -10.99 -0.09 10.41 16 7 O -0.51 -11.89 16.19 5.56 0.09 -11.80 16 8 C -0.15 -3.01 5.16 36.00 0.19 -2.83 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 14 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.08 0.79 6.41 -2.41 -0.02 0.77 16 19 C 0.14 0.96 2.88 -65.66 -0.19 0.77 16 20 H 0.11 0.47 6.32 -51.93 -0.33 0.14 16 21 N -0.70 -6.28 4.70 -51.75 -0.24 -6.53 16 22 C 0.44 4.55 7.65 -155.01 -1.19 3.36 16 23 C -0.25 -1.97 9.25 -39.22 -0.36 -2.33 16 24 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 25 C -0.26 -2.22 10.08 -39.34 -0.40 -2.62 16 26 C 0.36 4.15 8.40 -17.37 -0.15 4.01 16 27 F -0.11 -1.38 17.29 2.25 0.04 -1.34 16 28 N -0.58 -7.30 10.40 -12.78 -0.13 -7.43 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 32 H 0.07 0.78 7.82 -51.93 -0.41 0.38 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.09 1.72 7.85 -51.91 -0.41 1.31 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 39 H 0.41 4.07 7.25 -40.82 -0.30 3.77 16 40 H 0.14 0.74 6.15 -52.49 -0.32 0.41 16 41 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -36.23 368.39 -9.56 -45.79 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.40 Total: -0.08 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.39 Total: -2.26 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.21 Total: -48.48 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.23 -9.56 -45.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.699 kcal (2) G-P(sol) polarization free energy of solvation -36.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds