Wall clock time and date at job start Tue Mar 31 2020 23:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64763 * 2 1 4 4 C 1.54325 * 110.71774 * 123.14566 * 2 1 3 5 5 N 1.47023 * 107.27284 * 140.55371 * 4 2 1 6 6 C 1.34778 * 125.64979 * 181.01769 * 5 4 2 7 7 O 1.21278 * 119.99748 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00209 * 180.02562 * 6 5 4 9 9 S 1.80999 * 109.47181 * 180.02562 * 8 6 5 10 10 C 1.76199 * 99.99825 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00405 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99855 * 179.72221 * 10 9 8 13 13 N 1.31634 * 119.99756 * 0.27728 * 12 10 9 14 14 Si 1.86803 * 120.00005 * 180.27923 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00123 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00074 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99873 * 14 12 10 18 18 C 1.47422 * 108.70279 * 1.28568 * 5 4 2 19 19 C 1.55131 * 104.72363 * 335.55352 * 18 5 4 20 20 H 1.09001 * 110.94061 * 155.28880 * 19 18 5 21 21 N 1.46500 * 111.19092 * 279.19199 * 19 18 5 22 22 C 1.38995 * 119.99815 * 267.18568 * 21 19 18 23 23 C 1.39061 * 119.68947 * 359.97438 * 22 21 19 24 24 C 1.38384 * 119.15368 * 179.97438 * 23 22 21 25 25 C 1.38755 * 118.53505 * 0.02562 * 24 23 22 26 26 C 1.38367 * 119.30870 * 359.97438 * 25 24 23 27 27 F 1.35093 * 119.60723 * 179.97438 * 26 25 24 28 28 N 1.32142 * 120.79094 * 359.75367 * 26 25 24 29 29 H 1.08998 * 109.47007 * 298.31302 * 1 2 3 30 30 H 1.09006 * 109.47001 * 58.31249 * 1 2 3 31 31 H 1.08994 * 109.47507 * 178.30965 * 1 2 3 32 32 H 1.08998 * 109.88499 * 21.13306 * 4 2 1 33 33 H 1.09002 * 110.00828 * 260.04040 * 4 2 1 34 34 H 1.08999 * 109.47278 * 59.99800 * 8 6 5 35 35 H 1.09002 * 109.46837 * 300.00183 * 8 6 5 36 36 H 0.97000 * 119.99219 * 179.97438 * 13 12 10 37 37 H 1.09003 * 110.36588 * 94.47991 * 18 5 4 38 38 H 1.09004 * 110.36868 * 216.80396 * 18 5 4 39 39 H 0.97002 * 120.00247 * 87.18457 * 21 19 18 40 40 H 1.07998 * 120.42720 * 359.95588 * 23 22 21 41 41 H 1.08005 * 120.73094 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.34475 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7892 1.2086 5 7 3.2444 -1.5496 0.7416 6 6 3.9922 -2.3812 1.4938 7 8 3.7191 -2.5520 2.6630 8 6 5.1677 -3.0988 0.8820 9 16 5.9626 -4.1333 2.1365 10 6 7.2627 -4.8345 1.1759 11 1 7.3660 -4.5719 0.1334 12 6 8.1579 -5.7196 1.7606 13 7 8.0323 -6.0392 3.0314 14 14 9.5409 -6.4569 0.7442 15 1 10.7371 -5.5808 0.8265 16 1 9.8773 -7.8045 1.2698 17 1 9.1078 -6.5717 -0.6716 18 6 3.4665 -1.2469 -0.6840 19 6 2.0789 -0.7976 -1.2125 20 1 2.1844 -0.1555 -2.0870 21 7 1.2270 -1.9514 -1.5112 22 6 1.2017 -2.4825 -2.7954 23 6 1.9872 -1.9133 -3.7918 24 6 1.9538 -2.4514 -5.0663 25 6 1.1326 -3.5445 -5.3030 26 6 0.3770 -4.0613 -4.2655 27 9 -0.4250 -5.1251 -4.4893 28 7 0.4337 -3.5294 -3.0572 29 1 -0.3633 0.4874 0.9047 30 1 -0.3633 0.5398 -0.8745 31 1 -0.3634 -1.0271 -0.0303 32 1 1.3129 -1.4732 1.5800 33 1 2.3736 -0.1011 1.9998 34 1 5.8838 -2.3682 0.5060 35 1 4.8227 -3.7258 0.0598 36 1 8.6578 -6.6580 3.4398 37 1 4.1947 -0.4429 -0.7921 38 1 3.8031 -2.1384 -1.2132 39 1 0.6807 -2.3447 -0.8128 40 1 2.6150 -1.0620 -3.5739 41 1 2.5531 -2.0292 -5.8595 42 1 1.0844 -3.9879 -6.2867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112306304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:05 Heat of formation + Delta-G solvation = -50.756599 kcal Electronic energy + Delta-G solvation = -26526.483026 eV Core-core repulsion = 22546.664835 eV Total energy + Delta-G solvation = -3979.818191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01164 -41.62213 -40.77659 -39.09979 -35.76270 -34.61455 -33.93328 -33.45149 -31.00241 -30.59380 -29.32043 -27.78202 -26.94472 -24.81698 -24.34479 -23.37431 -21.02840 -20.78268 -19.70201 -19.19889 -18.67615 -18.01903 -17.51369 -17.08231 -16.95537 -16.90728 -16.68556 -16.50545 -16.11527 -15.61550 -15.36363 -15.12015 -14.64902 -14.56914 -14.32955 -14.17295 -14.02282 -13.71118 -13.59813 -13.53319 -13.26211 -13.17249 -12.90723 -12.85360 -12.65504 -12.37157 -11.94032 -11.77961 -11.72070 -11.33389 -11.16561 -11.00816 -10.69998 -10.67089 -10.32373 -9.73872 -8.76257 -8.71557 -8.37332 -6.16631 0.10899 0.40408 1.21142 1.40998 1.42762 1.52461 1.54302 1.86202 2.05663 2.24708 2.74117 2.94599 2.96952 3.16296 3.34445 3.46830 3.75476 3.80180 3.87914 3.94274 4.15908 4.18531 4.27378 4.28793 4.37679 4.42518 4.50984 4.60068 4.67209 4.75927 4.79251 4.81521 5.01545 5.02820 5.12490 5.27682 5.32821 5.38091 5.38415 5.58090 5.95609 6.16711 6.32106 6.38574 6.94920 7.03625 7.08101 8.72109 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009572 B = 0.003176 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.461272 B = 8814.790463 C =10843.244672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.135 0.865 4 C 0.101 3.899 5 N -0.612 5.612 6 C 0.544 3.456 7 O -0.568 6.568 8 C -0.117 4.117 9 S -0.152 6.152 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.258 1.258 18 C 0.072 3.928 19 C 0.150 3.850 20 H 0.153 0.847 21 N -0.709 5.709 22 C 0.424 3.576 23 C -0.243 4.243 24 C -0.001 4.001 25 C -0.252 4.252 26 C 0.319 3.681 27 F -0.130 7.130 28 N -0.619 5.619 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.272 0.728 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 17.853 -20.763 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.153 0.847 4 C -0.021 4.021 5 N -0.347 5.347 6 C 0.332 3.668 7 O -0.447 6.447 8 C -0.268 4.268 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.182 1.182 18 C -0.051 4.051 19 C 0.044 3.956 20 H 0.170 0.830 21 N -0.340 5.340 22 C 0.188 3.812 23 C -0.267 4.267 24 C -0.026 4.026 25 C -0.276 4.276 26 C 0.167 3.833 27 F -0.109 7.109 28 N -0.344 5.344 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.192 0.808 41 H 0.202 0.798 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.922 17.224 -18.188 29.157 hybrid contribution 0.931 -1.175 -1.267 1.963 sum -13.991 16.049 -19.455 28.841 Atomic orbital electron populations 1.21685 0.92621 1.01833 1.03430 1.22554 0.97329 1.00278 0.90588 0.84668 1.22240 0.86852 0.94443 0.98550 1.48336 1.29969 1.44059 1.12342 1.19751 0.82996 0.78559 0.85466 1.90690 1.71257 1.64494 1.18267 1.23267 0.98396 1.02099 1.03035 1.85595 1.35321 1.54774 1.16816 1.23178 1.15265 1.32024 0.98982 0.89979 1.26148 1.00550 0.95880 0.96476 1.70190 1.37800 1.33758 1.13028 0.84945 0.77246 0.77445 0.78300 1.18927 1.20309 1.18230 1.23365 0.99487 1.02738 0.79557 1.22427 0.87159 0.86191 0.99802 0.83014 1.44672 1.48228 1.33822 1.07243 1.18153 0.88890 0.86986 0.87170 1.21875 1.05555 1.06154 0.93109 1.21712 0.92811 0.91036 0.97041 1.21816 1.02852 1.02620 1.00287 1.18084 0.90254 0.85174 0.89823 1.91575 1.71808 1.53392 1.94170 1.66077 1.28592 1.15879 1.23810 0.91364 0.90248 0.93799 0.93109 0.91434 0.87215 0.88600 0.91939 0.86784 0.90843 0.76404 0.80827 0.79819 0.81985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.80 71.98 0.63 -0.61 16 2 C -0.09 -0.82 3.42 -9.60 -0.03 -0.85 16 3 H 0.14 0.53 8.14 -2.39 -0.02 0.51 16 4 C 0.10 2.04 6.45 86.73 0.56 2.60 16 5 N -0.61 -15.76 3.32 -811.35 -2.70 -18.46 16 6 C 0.54 21.12 7.87 87.66 0.69 21.81 16 7 O -0.57 -27.64 16.19 -3.02 -0.05 -27.69 16 8 C -0.12 -4.83 5.16 71.23 0.37 -4.47 16 9 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 10 C -0.55 -31.70 9.50 67.96 0.65 -31.05 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.82 5.49 84.86 0.47 1.28 16 13 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 14 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 15 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 16 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 18 C 0.07 1.11 6.41 86.93 0.56 1.67 16 19 C 0.15 1.44 2.88 46.46 0.13 1.57 16 20 H 0.15 0.30 6.32 -2.39 -0.02 0.29 16 21 N -0.71 -11.37 4.70 -317.63 -1.49 -12.87 16 22 C 0.42 7.94 7.65 133.03 1.02 8.96 16 23 C -0.24 -2.80 9.25 22.50 0.21 -2.59 16 24 C 0.00 -0.01 10.16 22.43 0.23 0.22 16 25 C -0.25 -3.83 10.08 22.42 0.23 -3.61 16 26 C 0.32 7.44 8.40 84.68 0.71 8.15 16 27 F -0.13 -3.34 17.29 44.97 0.78 -2.57 16 28 N -0.62 -15.78 10.40 -194.34 -2.02 -17.81 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.04 0.56 6.34 -2.39 -0.02 0.54 16 32 H 0.05 1.20 7.82 -2.39 -0.02 1.18 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 35 H 0.10 3.76 7.85 -2.39 -0.02 3.75 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.35 7.48 -2.38 -0.02 1.34 16 39 H 0.40 7.89 7.25 -92.71 -0.67 7.22 16 40 H 0.17 0.73 6.15 -2.91 -0.02 0.71 16 41 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 42 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -86.16 368.39 2.47 -83.69 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.39 Total: 12.95 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.41 Total: 3.10 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -5.92 Total: -105.51 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -86.16 2.47 -83.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112306304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.934 kcal (2) G-P(sol) polarization free energy of solvation -86.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds