Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31240 * 124.05610 * 2 1 4 4 N 1.27329 * 120.03706 * 180.33657 * 3 2 1 5 5 S 1.56634 * 109.74281 * 359.71809 * 4 3 2 6 6 C 1.38244 * 124.05409 * 179.82556 * 2 1 3 7 7 C 1.47166 * 128.47634 * 0.02562 * 6 2 1 8 8 O 1.21621 * 120.00300 * 317.26017 * 7 6 2 9 9 N 1.34780 * 120.00075 * 137.26004 * 7 6 2 10 10 C 1.47081 * 120.88499 * 176.05576 * 9 7 6 11 11 C 1.53235 * 108.52114 * 231.16328 * 10 9 7 12 12 N 1.46896 * 109.34267 * 306.16561 * 11 10 9 13 13 C 1.46898 * 111.00178 * 187.25330 * 12 11 10 14 14 C 1.50704 * 109.47384 * 301.32619 * 13 12 11 15 15 O 1.21301 * 119.99723 * 354.25225 * 14 13 12 16 16 N 1.34775 * 120.00077 * 174.24583 * 14 13 12 17 17 C 1.37098 * 119.99495 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00640 * 0.02562 * 17 16 14 19 19 C 1.38958 * 119.99601 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99780 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47163 * 90.00180 * 21 19 17 23 23 H 1.48507 * 109.47102 * 210.00085 * 21 19 17 24 24 H 1.48492 * 109.47239 * 329.99892 * 21 19 17 25 25 C 1.46902 * 111.26638 * 63.10822 * 12 11 10 26 26 C 1.47085 * 120.87872 * 356.03181 * 9 7 6 27 27 H 1.08998 * 109.46803 * 270.17075 * 1 2 3 28 28 H 1.08998 * 109.46802 * 30.17522 * 1 2 3 29 29 H 1.08998 * 109.46979 * 150.17296 * 1 2 3 30 30 H 1.09008 * 109.62545 * 350.87284 * 10 9 7 31 31 H 1.08997 * 109.62797 * 111.45140 * 10 9 7 32 32 H 1.09006 * 109.49410 * 66.12972 * 11 10 9 33 33 H 1.09002 * 109.49411 * 186.20156 * 11 10 9 34 34 H 1.08996 * 109.47208 * 61.32808 * 13 12 11 35 35 H 1.08996 * 109.47103 * 181.33092 * 13 12 11 36 36 H 0.96994 * 120.00305 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99887 * 179.97438 * 20 19 17 38 38 H 1.08999 * 109.49318 * 176.93843 * 25 12 11 39 39 H 1.08998 * 109.49491 * 56.85041 * 25 12 11 40 40 H 1.08997 * 109.63038 * 248.54230 * 26 9 7 41 41 H 1.08997 * 109.62879 * 9.12869 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0065 5 16 3.9367 -0.5096 -0.0062 6 6 2.2812 -1.1454 0.0035 7 6 1.8394 -2.5491 0.0072 8 8 0.9187 -2.8950 0.7227 9 7 2.4551 -3.4515 -0.7822 10 6 2.0875 -4.8748 -0.7310 11 6 3.3653 -5.7013 -0.5512 12 7 4.3268 -5.3457 -1.6033 13 6 5.4954 -6.2353 -1.5711 14 6 6.1596 -6.1434 -0.2214 15 8 5.7686 -5.3341 0.5931 16 7 7.1880 -6.9605 0.0805 17 6 7.7919 -6.8772 1.3085 18 1 7.4433 -6.1572 2.0340 19 6 8.8526 -7.7193 1.6196 20 7 9.4311 -7.6399 2.7968 21 14 9.4551 -8.9651 0.3649 22 1 10.5142 -8.3497 -0.4746 23 1 10.0079 -10.1497 1.0696 24 1 8.3222 -9.3865 -0.4976 25 6 4.7338 -3.9380 -1.4995 26 6 3.5121 -3.0390 -1.7181 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5111 30 1 1.4169 -5.0496 0.1104 31 1 1.5950 -5.1594 -1.6608 32 1 3.8005 -5.4905 0.4257 33 1 3.1251 -6.7622 -0.6215 34 1 5.1756 -7.2618 -1.7495 35 1 6.2019 -5.9351 -2.3448 36 1 7.5009 -7.6074 -0.5710 37 1 10.1713 -8.2279 3.0141 38 1 5.4860 -3.7200 -2.2576 39 1 5.1498 -3.7517 -0.5094 40 1 3.1566 -3.1473 -2.7428 41 1 3.7833 -2.0004 -1.5294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112606279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = 32.768785 kcal Electronic energy + Delta-G solvation = -27440.092899 eV Core-core repulsion = 23483.816602 eV Total energy + Delta-G solvation = -3956.276297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17881 -40.28296 -39.06673 -37.23969 -34.73895 -33.84762 -33.56970 -31.85175 -31.36290 -29.53463 -28.30757 -27.16651 -25.84950 -23.99974 -23.84306 -22.60010 -20.86445 -19.65092 -19.26881 -18.89686 -18.30365 -17.50553 -16.57173 -16.21199 -15.96396 -15.47943 -15.20270 -15.11806 -14.71187 -14.53481 -14.34927 -14.16701 -13.80177 -13.49851 -13.31556 -13.19420 -12.97964 -12.68974 -12.55655 -12.43491 -11.88915 -11.80502 -11.78262 -11.46554 -11.31934 -11.07574 -10.88687 -10.69886 -10.46009 -10.24687 -10.12980 -9.92440 -9.75420 -9.64779 -9.50882 -8.90267 -8.31616 -7.70558 -6.44724 -3.96595 -0.40677 0.55354 1.29048 1.76769 2.56277 2.72075 2.92643 2.97271 3.06811 3.52070 3.64980 3.98289 3.99293 4.13272 4.38929 4.50981 4.74015 4.91357 5.00545 5.09623 5.10835 5.25712 5.29358 5.35042 5.40411 5.43187 5.59699 5.69746 5.72135 5.76191 5.76680 5.82536 6.22638 6.26854 6.43614 6.90721 7.08844 7.12825 7.41833 7.45096 7.79409 8.00350 8.42613 8.80128 9.27528 9.64223 10.67813 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002912 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.162565 B = 9611.899931 C =10249.170437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.090 3.910 3 N -0.251 5.251 4 N -0.268 5.268 5 S 0.448 5.552 6 C -0.293 4.293 7 C 0.605 3.395 8 O -0.517 6.517 9 N -0.596 5.596 10 C 0.125 3.875 11 C 0.019 3.981 12 N -0.511 5.511 13 C 0.039 3.961 14 C 0.411 3.589 15 O -0.578 6.578 16 N -0.580 5.580 17 C -0.310 4.310 18 H 0.119 0.881 19 C 0.044 3.956 20 N -0.875 5.875 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.268 1.268 25 C 0.021 3.979 26 C 0.110 3.890 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.372 0.628 37 H 0.275 0.725 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 7.965 -12.887 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 N -0.117 5.117 4 N -0.248 5.248 5 S 0.585 5.415 6 C -0.434 4.434 7 C 0.389 3.611 8 O -0.393 6.393 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.109 4.109 12 N -0.234 5.234 13 C -0.093 4.093 14 C 0.197 3.803 15 O -0.463 6.463 16 N -0.217 5.217 17 C -0.439 4.439 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.514 5.514 21 Si 0.707 3.293 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.107 4.107 26 C -0.014 4.014 27 H 0.110 0.890 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.205 0.795 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.269 9.327 -12.251 19.688 hybrid contribution 0.061 -1.614 -0.076 1.617 sum -12.208 7.713 -12.328 18.987 Atomic orbital electron populations 1.20367 0.84045 1.04075 1.04479 1.22867 1.00020 0.85116 0.97699 1.70625 0.97057 1.27861 1.16160 1.78738 1.09337 1.16991 1.19725 1.83072 1.08952 0.99705 1.49777 1.27716 0.98825 1.00000 1.16813 1.16471 0.82347 0.82084 0.80171 1.90828 1.28606 1.78896 1.41014 1.47963 1.37720 1.08391 1.38896 1.21816 0.97276 0.77432 1.03192 1.22777 0.91957 0.99179 0.97019 1.62447 1.12296 1.02683 1.46016 1.22108 0.92655 0.98605 0.95899 1.20989 0.83778 0.85081 0.90440 1.90460 1.65302 1.39421 1.51148 1.42394 1.30368 1.33317 1.15652 1.19443 1.12825 1.20482 0.91113 0.86321 1.25095 0.96562 0.97855 0.96539 1.69622 1.23145 1.38547 1.20133 0.86660 0.79601 0.81727 0.81352 1.19507 1.20071 1.19370 1.22706 0.95560 0.88193 1.04268 1.22118 0.87948 0.97828 0.93551 0.89016 0.89687 0.89647 0.88542 0.90672 0.89674 0.89941 0.88968 0.88873 0.79542 0.91427 0.89831 0.89780 0.89916 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.96 36.01 0.36 -0.26 16 2 C 0.09 1.07 7.00 -82.84 -0.58 0.49 16 3 N -0.25 -3.30 11.54 33.42 0.39 -2.92 16 4 N -0.27 -3.53 12.51 60.35 0.75 -2.78 16 5 S 0.45 5.23 20.78 -107.50 -2.23 2.99 16 6 C -0.29 -3.68 5.82 -35.96 -0.21 -3.89 16 7 C 0.60 8.39 7.29 -12.63 -0.09 8.29 16 8 O -0.52 -8.36 16.11 5.26 0.08 -8.28 16 9 N -0.60 -7.54 3.01 -173.82 -0.52 -8.06 16 10 C 0.12 1.52 6.59 -3.60 -0.02 1.49 16 11 C 0.02 0.27 5.11 -3.71 -0.02 0.25 16 12 N -0.51 -6.81 4.83 -235.76 -1.14 -7.95 16 13 C 0.04 0.55 5.85 -4.97 -0.03 0.53 16 14 C 0.41 8.19 7.18 -10.98 -0.08 8.11 16 15 O -0.58 -13.44 11.25 5.54 0.06 -13.37 16 16 N -0.58 -12.65 5.09 -10.96 -0.06 -12.71 16 17 C -0.31 -8.27 10.16 -14.93 -0.15 -8.42 16 18 H 0.12 3.66 7.39 -52.49 -0.39 3.28 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -24.70 13.96 55.50 0.77 -23.92 16 21 Si 0.88 18.39 27.74 -169.99 -4.71 13.67 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 25 C 0.02 0.28 5.22 -3.70 -0.02 0.26 16 26 C 0.11 1.19 6.40 -3.60 -0.02 1.16 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.74 7.76 -51.93 -0.40 0.34 16 30 H 0.10 1.23 7.09 -51.92 -0.37 0.87 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.56 5.66 -51.93 -0.29 1.26 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.37 7.11 5.76 -40.82 -0.24 6.87 16 37 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 39 H 0.08 1.39 5.81 -51.93 -0.30 1.09 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.70 3.88 -31.84 -0.12 0.57 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -32.37 346.18 -7.00 -39.37 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.65 Total: 9.67 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.96 Total: 9.06 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.20 Total: -58.33 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.15 Total: -21.65 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.67 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -2.23 Total: 2.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.37 -7.00 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112606279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.143 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds