Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31240 * 124.05610 * 2 1 4 4 N 1.27329 * 120.03706 * 180.33657 * 3 2 1 5 5 S 1.56634 * 109.74281 * 359.71809 * 4 3 2 6 6 C 1.38244 * 124.05409 * 179.82556 * 2 1 3 7 7 C 1.47166 * 128.47634 * 0.02562 * 6 2 1 8 8 O 1.21621 * 120.00300 * 317.26017 * 7 6 2 9 9 N 1.34780 * 120.00075 * 137.26004 * 7 6 2 10 10 C 1.47081 * 120.88499 * 176.05576 * 9 7 6 11 11 C 1.53235 * 108.52114 * 231.16328 * 10 9 7 12 12 N 1.46896 * 109.34267 * 306.16561 * 11 10 9 13 13 C 1.46898 * 111.00178 * 187.25330 * 12 11 10 14 14 C 1.50704 * 109.47384 * 301.32619 * 13 12 11 15 15 O 1.21301 * 119.99723 * 354.25225 * 14 13 12 16 16 N 1.34775 * 120.00077 * 174.24583 * 14 13 12 17 17 C 1.37098 * 119.99495 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00640 * 0.02562 * 17 16 14 19 19 C 1.38958 * 119.99601 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00089 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99780 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47163 * 90.00180 * 21 19 17 23 23 H 1.48507 * 109.47102 * 210.00085 * 21 19 17 24 24 H 1.48492 * 109.47239 * 329.99892 * 21 19 17 25 25 C 1.46902 * 111.26638 * 63.10822 * 12 11 10 26 26 C 1.47085 * 120.87872 * 356.03181 * 9 7 6 27 27 H 1.08998 * 109.46803 * 270.17075 * 1 2 3 28 28 H 1.08998 * 109.46802 * 30.17522 * 1 2 3 29 29 H 1.08998 * 109.46979 * 150.17296 * 1 2 3 30 30 H 1.09008 * 109.62545 * 350.87284 * 10 9 7 31 31 H 1.08997 * 109.62797 * 111.45140 * 10 9 7 32 32 H 1.09006 * 109.49410 * 66.12972 * 11 10 9 33 33 H 1.09002 * 109.49411 * 186.20156 * 11 10 9 34 34 H 1.08996 * 109.47208 * 61.32808 * 13 12 11 35 35 H 1.08996 * 109.47103 * 181.33092 * 13 12 11 36 36 H 0.96994 * 120.00305 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99887 * 179.97438 * 20 19 17 38 38 H 1.08999 * 109.49318 * 176.93843 * 25 12 11 39 39 H 1.08998 * 109.49491 * 56.85041 * 25 12 11 40 40 H 1.08997 * 109.63038 * 248.54230 * 26 9 7 41 41 H 1.08997 * 109.62879 * 9.12869 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0065 5 16 3.9367 -0.5096 -0.0062 6 6 2.2812 -1.1454 0.0035 7 6 1.8394 -2.5491 0.0072 8 8 0.9187 -2.8950 0.7227 9 7 2.4551 -3.4515 -0.7822 10 6 2.0875 -4.8748 -0.7310 11 6 3.3653 -5.7013 -0.5512 12 7 4.3268 -5.3457 -1.6033 13 6 5.4954 -6.2353 -1.5711 14 6 6.1596 -6.1434 -0.2214 15 8 5.7686 -5.3341 0.5931 16 7 7.1880 -6.9605 0.0805 17 6 7.7919 -6.8772 1.3085 18 1 7.4433 -6.1572 2.0340 19 6 8.8526 -7.7193 1.6196 20 7 9.4311 -7.6399 2.7968 21 14 9.4551 -8.9651 0.3649 22 1 10.5142 -8.3497 -0.4746 23 1 10.0079 -10.1497 1.0696 24 1 8.3222 -9.3865 -0.4976 25 6 4.7338 -3.9380 -1.4995 26 6 3.5121 -3.0390 -1.7181 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5111 30 1 1.4169 -5.0496 0.1104 31 1 1.5950 -5.1594 -1.6608 32 1 3.8005 -5.4905 0.4257 33 1 3.1251 -6.7622 -0.6215 34 1 5.1756 -7.2618 -1.7495 35 1 6.2019 -5.9351 -2.3448 36 1 7.5009 -7.6074 -0.5710 37 1 10.1713 -8.2279 3.0141 38 1 5.4860 -3.7200 -2.2576 39 1 5.1498 -3.7517 -0.5094 40 1 3.1566 -3.1473 -2.7428 41 1 3.7833 -2.0004 -1.5294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112606279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = 6.022874 kcal Electronic energy + Delta-G solvation = -27441.252689 eV Core-core repulsion = 23483.816602 eV Total energy + Delta-G solvation = -3957.436087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.16718 -41.42025 -40.47184 -38.53704 -36.21095 -35.35051 -34.50861 -33.77557 -32.36996 -30.65195 -29.34701 -28.10951 -27.32457 -25.38092 -24.95164 -23.66155 -21.95611 -21.31120 -20.56232 -19.99200 -19.70807 -18.56471 -17.78055 -17.61771 -17.03986 -16.75424 -16.48633 -16.30118 -15.95736 -15.78143 -15.57975 -15.41169 -14.96825 -14.90985 -14.52802 -14.26869 -14.06578 -13.95984 -13.62567 -13.58984 -13.21688 -13.03580 -12.79850 -12.68447 -12.44237 -12.42273 -12.12858 -12.09866 -11.99838 -11.51493 -11.39269 -11.25582 -11.04307 -10.88949 -10.72511 -10.22093 -9.95365 -9.06127 -8.42531 -6.02900 -1.40130 -0.41458 0.31241 0.79561 1.30472 1.35385 1.44713 1.54767 1.69734 1.93482 2.22616 2.72578 2.89600 2.98354 3.15460 3.17038 3.47447 3.77971 3.93587 4.07026 4.17352 4.20222 4.28128 4.41055 4.51625 4.60342 4.60849 4.66482 4.69555 4.70987 4.78705 5.07222 5.09769 5.22382 5.27957 5.52074 5.78622 5.95671 5.96657 6.08716 6.47801 6.57077 6.73848 6.88498 7.39665 7.96014 8.75056 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.002912 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.162565 B = 9611.899931 C =10249.170437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.094 3.906 3 N -0.265 5.265 4 N -0.284 5.284 5 S 0.473 5.527 6 C -0.309 4.309 7 C 0.603 3.397 8 O -0.547 6.547 9 N -0.598 5.598 10 C 0.129 3.871 11 C 0.022 3.978 12 N -0.494 5.494 13 C 0.047 3.953 14 C 0.416 3.584 15 O -0.613 6.613 16 N -0.588 5.588 17 C -0.325 4.325 18 H 0.053 0.947 19 C -0.017 4.017 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.257 1.257 23 H -0.280 1.280 24 H -0.227 1.227 25 C 0.019 3.981 26 C 0.113 3.887 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.390 0.610 37 H 0.278 0.722 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.114 0.886 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.871 6.856 -17.126 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 N -0.131 5.131 4 N -0.264 5.264 5 S 0.610 5.390 6 C -0.449 4.449 7 C 0.388 3.612 8 O -0.426 6.426 9 N -0.330 5.330 10 C 0.007 3.993 11 C -0.106 4.106 12 N -0.216 5.216 13 C -0.084 4.084 14 C 0.204 3.796 15 O -0.500 6.500 16 N -0.229 5.229 17 C -0.455 4.455 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.577 5.577 21 Si 0.784 3.216 22 H -0.182 1.182 23 H -0.206 1.206 24 H -0.150 1.150 25 C -0.110 4.110 26 C -0.010 4.010 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.226 0.774 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.132 0.868 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.074 8.243 -16.532 22.632 hybrid contribution 0.219 -1.134 1.314 1.749 sum -12.855 7.110 -15.218 21.152 Atomic orbital electron populations 1.20507 0.82102 1.05243 1.05065 1.23303 1.01177 0.84496 0.96317 1.70663 0.97083 1.28465 1.16868 1.78645 1.09680 1.17964 1.20130 1.82970 1.08326 0.98779 1.48912 1.27684 0.99432 0.99713 1.18089 1.16613 0.82117 0.82604 0.79819 1.90806 1.30089 1.79518 1.42211 1.48106 1.37736 1.08470 1.38698 1.21821 0.96209 0.76946 1.04294 1.22699 0.92672 1.00580 0.94684 1.62553 1.11569 1.02804 1.44681 1.22339 0.92980 1.00850 0.92250 1.22403 0.82196 0.82809 0.92220 1.90497 1.65806 1.40445 1.53206 1.42243 1.31290 1.34961 1.14402 1.18974 1.14116 1.20025 0.92373 0.92908 1.26158 0.96099 1.00196 0.99101 1.69815 1.24295 1.40383 1.23221 0.85370 0.80215 0.77592 0.78377 1.18156 1.20555 1.14988 1.22749 0.97064 0.88383 1.02776 1.22233 0.86659 0.97563 0.94549 0.88604 0.87617 0.89314 0.89654 0.87578 0.94656 0.88308 0.85788 0.85319 0.77448 0.91258 0.87258 0.93981 0.86817 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 9.96 71.24 0.71 -0.44 16 2 C 0.09 2.17 7.00 42.65 0.30 2.47 16 3 N -0.27 -6.81 11.54 -48.18 -0.56 -7.36 16 4 N -0.28 -7.38 12.51 37.02 0.46 -6.92 16 5 S 0.47 10.94 20.78 -56.49 -1.17 9.76 16 6 C -0.31 -7.62 5.82 24.62 0.14 -7.48 16 7 C 0.60 16.50 7.29 86.59 0.63 17.13 16 8 O -0.55 -17.81 16.11 -4.10 -0.07 -17.88 16 9 N -0.60 -14.32 3.01 -822.09 -2.47 -16.79 16 10 C 0.13 2.93 6.59 86.35 0.57 3.49 16 11 C 0.02 0.60 5.11 86.38 0.44 1.04 16 12 N -0.49 -11.61 4.83 -899.82 -4.35 -15.96 16 13 C 0.05 1.16 5.85 85.56 0.50 1.66 16 14 C 0.42 16.30 7.18 87.66 0.63 16.93 16 15 O -0.61 -29.65 11.25 -3.10 -0.03 -29.69 16 16 N -0.59 -25.28 5.09 -306.97 -1.56 -26.84 16 17 C -0.33 -18.13 10.16 84.04 0.85 -17.28 16 18 H 0.05 3.56 7.39 -2.91 -0.02 3.53 16 19 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 20 N -0.94 -55.44 13.96 21.67 0.30 -55.14 16 21 Si 0.96 37.03 27.74 68.60 1.90 38.94 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 24 H -0.23 -7.11 6.52 99.48 0.65 -6.46 16 25 C 0.02 0.45 5.22 86.39 0.45 0.90 16 26 C 0.11 2.18 6.40 86.35 0.55 2.73 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.44 7.76 -2.39 -0.02 1.42 16 30 H 0.09 2.15 7.09 -2.38 -0.02 2.13 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.04 1.33 5.66 -2.38 -0.01 1.31 16 33 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 34 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.13 2.38 8.05 -2.39 -0.02 2.36 16 36 H 0.39 13.70 5.76 -92.71 -0.53 13.17 16 37 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.11 2.03 8.05 -2.39 -0.02 2.01 16 39 H 0.04 1.40 5.81 -2.39 -0.01 1.38 16 40 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.37 3.88 -15.16 -0.06 1.31 16 Total: -1.00 -77.90 346.18 -0.84 -78.74 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.46 Total: 28.44 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.25 Total: 20.71 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -8.17 Total: -129.02 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.10 Total: -47.57 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 1.90 Total: 38.94 kcal Atomic # 16 Polarization: 10.94 SS G_CDS: -1.17 Total: 9.76 kcal Total: -77.90 -0.84 -78.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112606279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.763 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds