Wall clock time and date at job start Tue Mar 31 2020 22:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47298 * 270.00560 * 3 2 1 5 5 H 1.48502 * 109.46940 * 30.00236 * 3 2 1 6 6 H 1.48501 * 109.47145 * 150.00029 * 3 2 1 7 7 C 1.38799 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00195 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99971 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47239 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00001 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00050 * 180.02562 * 11 10 9 14 14 C 1.47084 * 120.88093 * 180.02562 * 13 11 10 15 15 C 1.53240 * 108.52093 * 231.20439 * 14 13 11 16 16 N 1.46907 * 109.33817 * 306.17229 * 15 14 13 17 17 C 1.46903 * 110.99656 * 187.25546 * 16 15 14 18 18 C 1.50699 * 109.46771 * 169.99823 * 17 16 15 19 19 C 1.38234 * 119.58907 * 95.02130 * 18 17 16 20 20 C 1.38596 * 119.18962 * 179.97438 * 19 18 17 21 21 C 1.38878 * 118.39751 * 359.73426 * 20 19 18 22 22 F 1.35093 * 120.44585 * 180.28144 * 21 20 19 23 23 C 1.38424 * 119.11294 * 0.52835 * 21 20 19 24 24 N 1.31848 * 119.59083 * 274.99532 * 18 17 16 25 25 C 1.46894 * 111.27230 * 63.10427 * 16 15 14 26 26 C 1.47079 * 120.88278 * 0.02562 * 13 11 10 27 27 H 0.97006 * 120.00046 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46672 * 60.00260 * 10 9 7 29 29 H 1.08991 * 109.47292 * 300.00195 * 10 9 7 30 30 H 1.09000 * 109.62729 * 111.49383 * 14 13 11 31 31 H 1.08996 * 109.62745 * 350.91340 * 14 13 11 32 32 H 1.08998 * 109.49590 * 186.20790 * 15 14 13 33 33 H 1.09004 * 109.51500 * 66.14246 * 15 14 13 34 34 H 1.08996 * 109.47519 * 49.99690 * 17 16 15 35 35 H 1.09005 * 109.46579 * 289.99679 * 17 16 15 36 36 H 1.08002 * 120.40748 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.79718 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.64033 * 179.73817 * 23 21 20 39 39 H 1.09000 * 109.49459 * 56.85222 * 25 16 15 40 40 H 1.09001 * 109.49233 * 176.93540 * 25 16 15 41 41 H 1.08999 * 109.62917 * 248.50422 * 26 13 11 42 42 H 1.09000 * 109.62548 * 9.08992 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8441 -6.3431 -0.0039 14 6 2.3495 -7.7283 -0.0050 15 6 3.0427 -8.4936 1.1272 16 7 4.4985 -8.3536 0.9890 17 6 5.2035 -9.2113 1.9510 18 6 6.6740 -9.2316 1.6222 19 6 7.5304 -8.3609 2.2698 20 6 8.8813 -8.3870 1.9613 21 6 9.3243 -9.2977 1.0110 22 9 10.6332 -9.3625 0.6829 23 6 8.4060 -10.1345 0.4006 24 7 7.1279 -10.0800 0.7208 25 6 4.9149 -6.9520 1.1296 26 6 4.2984 -6.1235 -0.0030 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7321 0.8873 29 1 3.1244 -3.7306 -0.8927 30 1 2.5811 -8.1990 -0.9605 31 1 1.2716 -7.7324 0.1566 32 1 2.7718 -9.5480 1.0727 33 1 2.7278 -8.0864 2.0881 34 1 4.8047 -10.2241 1.8952 35 1 5.0618 -8.8199 2.9585 36 1 7.1514 -7.6687 3.0071 37 1 9.5735 -7.7186 2.4517 38 1 8.7406 -10.8430 -0.3427 39 1 4.5738 -6.5658 2.0901 40 1 6.0017 -6.8883 1.0767 41 1 4.7171 -6.4401 -0.9583 42 1 4.5089 -5.0665 0.1600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112628998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:26 Heat of formation + Delta-G solvation = -26.467338 kcal Electronic energy + Delta-G solvation = -26089.876757 eV Core-core repulsion = 22111.111828 eV Total energy + Delta-G solvation = -3978.764930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.42242 -40.81802 -39.85177 -37.89039 -34.84664 -33.00460 -32.44475 -32.19886 -31.29778 -29.45948 -27.81888 -25.54663 -25.10630 -24.51418 -23.73285 -22.34345 -21.28895 -19.03141 -18.11396 -17.78743 -17.68563 -16.95178 -16.69918 -16.26222 -15.68503 -15.54724 -15.36139 -15.22852 -14.85042 -14.81900 -14.38748 -14.34268 -13.98230 -13.68906 -13.56230 -13.33738 -13.16799 -12.72487 -12.52675 -12.47559 -12.14076 -11.85957 -11.51105 -11.44617 -11.26085 -11.07697 -11.03469 -10.76983 -10.41393 -10.03978 -9.82042 -9.38421 -9.35990 -9.08225 -8.86988 -8.41907 -8.24231 -6.51835 -6.23081 -3.93835 0.37282 0.60238 2.86578 3.00058 3.05961 3.21028 3.24548 3.28830 3.49717 3.56262 3.67313 3.80726 4.12041 4.18726 4.25678 4.34683 4.57984 4.73108 4.75567 4.88927 4.97759 5.01162 5.08900 5.12062 5.18350 5.21416 5.32592 5.35091 5.36112 5.44615 5.46795 5.54682 5.69986 5.77498 5.84833 5.93693 6.08943 6.09554 6.52819 6.60941 6.68418 7.39390 7.55164 7.58160 8.33509 8.54161 9.22133 10.84311 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002311 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.781910 B =12110.830401 C =13631.943047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.150 4.150 11 C 0.535 3.465 12 O -0.517 6.517 13 N -0.622 5.622 14 C 0.119 3.881 15 C 0.045 3.955 16 N -0.529 5.529 17 C 0.105 3.895 18 C 0.129 3.871 19 C -0.138 4.138 20 C -0.107 4.107 21 C 0.044 3.956 22 F -0.131 7.131 23 C 0.078 3.922 24 N -0.437 5.437 25 C 0.035 3.965 26 C 0.115 3.885 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.236 -21.147 4.962 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.323 3.677 12 O -0.391 6.391 13 N -0.359 5.359 14 C -0.004 4.004 15 C -0.083 4.083 16 N -0.254 5.254 17 C -0.023 4.023 18 C -0.009 4.009 19 C -0.159 4.159 20 C -0.134 4.134 21 C 0.023 3.977 22 F -0.109 7.109 23 C -0.081 4.081 24 N -0.145 5.145 25 C -0.093 4.093 26 C -0.009 4.009 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.185 0.815 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.837 -22.042 4.073 27.445 hybrid contribution 2.895 2.137 1.141 3.775 sum 18.732 -19.905 5.214 27.825 Atomic orbital electron populations 1.70018 1.05952 1.27461 1.46814 1.24993 0.95029 0.99027 0.94542 0.86170 0.79390 0.81577 0.78371 1.20252 1.20753 1.19708 1.22850 0.94862 0.91623 1.58987 0.90965 1.85415 1.04972 0.96336 1.96692 1.23547 1.06484 0.95435 1.04623 1.20333 0.86193 0.86169 0.74962 1.90692 1.15143 1.85210 1.48072 1.48163 1.06305 1.05874 1.75566 1.21603 0.99832 0.80796 0.98214 1.22524 0.86281 1.01197 0.98346 1.61868 1.05955 1.07027 1.50552 1.20932 0.87972 0.99597 0.93835 1.21162 0.96368 0.91493 0.91902 1.21992 0.92771 0.99879 1.01226 1.21674 0.96975 0.97988 0.96726 1.18868 0.79487 1.00006 0.99387 1.91533 1.32410 1.95548 1.91448 1.22962 0.88036 0.97922 0.99134 1.67561 1.14131 1.20421 1.12380 1.22619 1.00549 0.87861 0.98294 1.21769 0.80026 1.00367 0.98716 0.92172 0.89401 0.89251 0.90978 0.88411 0.89279 0.93934 0.88413 0.92648 0.83781 0.83384 0.81501 0.93755 0.89797 0.90776 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.03 4.52 36.01 0.16 -2.87 16 11 C 0.54 10.14 7.73 -10.99 -0.08 10.06 16 12 O -0.52 -11.75 15.31 5.55 0.09 -11.67 16 13 N -0.62 -8.86 3.01 -172.44 -0.52 -9.38 16 14 C 0.12 1.43 6.60 -3.60 -0.02 1.41 16 15 C 0.04 0.42 5.62 -3.70 -0.02 0.40 16 16 N -0.53 -4.80 4.62 -235.74 -1.09 -5.89 16 17 C 0.10 0.77 5.29 -4.97 -0.03 0.74 16 18 C 0.13 1.03 5.64 -82.59 -0.47 0.56 16 19 C -0.14 -0.88 8.17 -39.45 -0.32 -1.20 16 20 C -0.11 -0.68 10.16 -39.21 -0.40 -1.08 16 21 C 0.04 0.33 7.34 -39.28 -0.29 0.04 16 22 F -0.13 -1.06 17.28 2.25 0.04 -1.02 16 23 C 0.08 0.61 11.17 -17.47 -0.20 0.41 16 24 N -0.44 -4.00 10.27 -9.42 -0.10 -4.10 16 25 C 0.04 0.32 5.38 -3.69 -0.02 0.31 16 26 C 0.12 1.29 6.51 -3.59 -0.02 1.27 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.09 1.62 7.66 -51.91 -0.40 1.23 16 29 H 0.09 1.68 8.00 -51.92 -0.42 1.26 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.31 7.06 -51.93 -0.37 0.95 16 32 H 0.09 0.67 7.99 -51.93 -0.41 0.26 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.69 7.97 -51.93 -0.41 0.27 16 35 H 0.06 0.34 8.02 -51.93 -0.42 -0.08 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.15 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.68 5.97 -51.93 -0.31 0.37 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 1.03 6.02 -51.93 -0.31 0.72 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -34.89 365.85 -9.63 -44.52 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.55 Total: -2.24 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.51 Total: -2.78 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.97 Total: -44.67 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.89 -9.63 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112628998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.054 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds