Wall clock time and date at job start Tue Mar 31 2020 22:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48500 * 109.47298 * 270.00560 * 3 2 1 5 5 H 1.48502 * 109.46940 * 30.00236 * 3 2 1 6 6 H 1.48501 * 109.47145 * 150.00029 * 3 2 1 7 7 C 1.38799 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00195 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99971 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47239 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00001 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00050 * 180.02562 * 11 10 9 14 14 C 1.47084 * 120.88093 * 180.02562 * 13 11 10 15 15 C 1.53240 * 108.52093 * 231.20439 * 14 13 11 16 16 N 1.46907 * 109.33817 * 306.17229 * 15 14 13 17 17 C 1.46903 * 110.99656 * 187.25546 * 16 15 14 18 18 C 1.50699 * 109.46771 * 169.99823 * 17 16 15 19 19 C 1.38234 * 119.58907 * 95.02130 * 18 17 16 20 20 C 1.38596 * 119.18962 * 179.97438 * 19 18 17 21 21 C 1.38878 * 118.39751 * 359.73426 * 20 19 18 22 22 F 1.35093 * 120.44585 * 180.28144 * 21 20 19 23 23 C 1.38424 * 119.11294 * 0.52835 * 21 20 19 24 24 N 1.31848 * 119.59083 * 274.99532 * 18 17 16 25 25 C 1.46894 * 111.27230 * 63.10427 * 16 15 14 26 26 C 1.47079 * 120.88278 * 0.02562 * 13 11 10 27 27 H 0.97006 * 120.00046 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.46672 * 60.00260 * 10 9 7 29 29 H 1.08991 * 109.47292 * 300.00195 * 10 9 7 30 30 H 1.09000 * 109.62729 * 111.49383 * 14 13 11 31 31 H 1.08996 * 109.62745 * 350.91340 * 14 13 11 32 32 H 1.08998 * 109.49590 * 186.20790 * 15 14 13 33 33 H 1.09004 * 109.51500 * 66.14246 * 15 14 13 34 34 H 1.08996 * 109.47519 * 49.99690 * 17 16 15 35 35 H 1.09005 * 109.46579 * 289.99679 * 17 16 15 36 36 H 1.08002 * 120.40748 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.79718 * 180.02562 * 20 19 18 38 38 H 1.08002 * 119.64033 * 179.73817 * 23 21 20 39 39 H 1.09000 * 109.49459 * 56.85222 * 25 16 15 40 40 H 1.09001 * 109.49233 * 176.93540 * 25 16 15 41 41 H 1.08999 * 109.62917 * 248.50422 * 26 13 11 42 42 H 1.09000 * 109.62548 * 9.08992 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9874 -5.3027 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8441 -6.3431 -0.0039 14 6 2.3495 -7.7283 -0.0050 15 6 3.0427 -8.4936 1.1272 16 7 4.4985 -8.3536 0.9890 17 6 5.2035 -9.2113 1.9510 18 6 6.6740 -9.2316 1.6222 19 6 7.5304 -8.3609 2.2698 20 6 8.8813 -8.3870 1.9613 21 6 9.3243 -9.2977 1.0110 22 9 10.6332 -9.3625 0.6829 23 6 8.4060 -10.1345 0.4006 24 7 7.1279 -10.0800 0.7208 25 6 4.9149 -6.9520 1.1296 26 6 4.2984 -6.1235 -0.0030 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7321 0.8873 29 1 3.1244 -3.7306 -0.8927 30 1 2.5811 -8.1990 -0.9605 31 1 1.2716 -7.7324 0.1566 32 1 2.7718 -9.5480 1.0727 33 1 2.7278 -8.0864 2.0881 34 1 4.8047 -10.2241 1.8952 35 1 5.0618 -8.8199 2.9585 36 1 7.1514 -7.6687 3.0071 37 1 9.5735 -7.7186 2.4517 38 1 8.7406 -10.8430 -0.3427 39 1 4.5738 -6.5658 2.0901 40 1 6.0017 -6.8883 1.0767 41 1 4.7171 -6.4401 -0.9583 42 1 4.5089 -5.0665 0.1600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112628998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:25 Heat of formation + Delta-G solvation = -50.389825 kcal Electronic energy + Delta-G solvation = -26090.914114 eV Core-core repulsion = 22111.111828 eV Total energy + Delta-G solvation = -3979.802286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.99377 -41.47814 -40.93734 -38.95625 -35.90842 -34.58278 -33.51537 -33.04552 -32.08963 -30.79912 -28.73767 -27.65296 -25.92531 -25.12643 -24.51865 -23.02047 -22.22949 -20.34981 -19.51031 -18.64583 -18.26761 -18.26358 -17.36490 -16.94104 -16.88527 -16.86060 -16.70886 -16.30770 -16.03502 -15.75352 -15.51344 -14.94836 -14.92811 -14.69820 -14.61430 -14.47731 -14.16762 -13.91772 -13.54099 -13.40479 -13.16924 -13.00986 -12.89085 -12.85640 -12.61858 -12.39329 -12.27004 -12.07770 -11.70975 -11.14145 -10.93609 -10.88115 -10.57793 -10.26604 -9.92819 -9.85334 -9.29634 -8.67497 -8.34335 -6.12828 -0.15860 0.10799 1.25074 1.42954 1.45881 1.55443 1.56475 2.05925 2.27487 2.43753 2.96720 2.99896 3.02743 3.24160 3.28171 3.63298 3.63935 3.80597 3.86787 3.87931 3.98906 4.12340 4.19782 4.26334 4.31319 4.38155 4.44710 4.51298 4.55364 4.66851 4.70467 4.79785 4.82495 4.83831 4.87866 4.96420 5.03652 5.42001 5.47566 5.59330 5.90209 5.94847 6.19988 6.28559 6.86153 7.06854 7.11633 8.74878 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.002311 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.781910 B =12110.830401 C =13631.943047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.152 6.152 10 C -0.123 4.123 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.609 5.609 14 C 0.115 3.885 15 C 0.055 3.945 16 N -0.537 5.537 17 C 0.107 3.893 18 C 0.118 3.882 19 C -0.134 4.134 20 C -0.105 4.105 21 C 0.033 3.967 22 F -0.137 7.137 23 C 0.069 3.931 24 N -0.462 5.462 25 C 0.042 3.958 26 C 0.108 3.892 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.179 0.821 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.121 -21.236 5.776 30.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.274 4.274 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.344 5.344 14 C -0.008 4.008 15 C -0.073 4.073 16 N -0.262 5.262 17 C -0.020 4.020 18 C -0.020 4.020 19 C -0.154 4.154 20 C -0.131 4.131 21 C 0.012 3.988 22 F -0.116 7.116 23 C -0.089 4.089 24 N -0.171 5.171 25 C -0.086 4.086 26 C -0.015 4.015 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.091 0.909 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.196 0.804 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.780 -22.180 4.891 29.471 hybrid contribution 2.083 2.000 0.869 3.015 sum 20.863 -20.179 5.759 29.591 Atomic orbital electron populations 1.70187 1.08002 1.28602 1.48014 1.26137 0.95966 1.03343 0.93754 0.84949 0.78258 0.75976 0.78768 1.19406 1.20364 1.17999 1.23183 0.95327 0.91842 1.58837 0.89835 1.85611 1.10586 0.99299 1.97020 1.23358 1.03416 0.94327 1.06308 1.20130 0.85955 0.86620 0.75132 1.90676 1.17165 1.85761 1.50828 1.48165 1.07251 1.05681 1.73278 1.21764 0.99261 0.79739 0.99994 1.22414 0.86460 1.01824 0.96627 1.61831 1.05599 1.07138 1.51629 1.20961 0.87534 0.99405 0.94133 1.21330 0.96785 0.91817 0.92089 1.22211 0.92489 0.99620 1.01123 1.21961 0.97473 0.97639 0.96041 1.19011 0.79212 1.00600 1.00005 1.91516 1.32831 1.95649 1.91603 1.23170 0.87867 0.98358 0.99519 1.67547 1.14765 1.21388 1.13374 1.22558 1.01246 0.87617 0.97210 1.22042 0.77872 1.01293 1.00269 0.92010 0.87335 0.87604 0.90090 0.90253 0.87139 0.94363 0.88185 0.90911 0.81521 0.81311 0.80364 0.93602 0.88133 0.89929 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.54 -30.79 9.50 67.95 0.65 -30.14 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.12 -4.89 4.52 71.24 0.32 -4.57 16 11 C 0.53 20.22 7.73 87.66 0.68 20.89 16 12 O -0.57 -26.57 15.31 -3.05 -0.05 -26.62 16 13 N -0.61 -16.62 3.01 -817.87 -2.46 -19.08 16 14 C 0.11 2.66 6.60 86.35 0.57 3.23 16 15 C 0.05 0.91 5.62 86.38 0.49 1.40 16 16 N -0.54 -8.27 4.62 -899.74 -4.16 -12.42 16 17 C 0.11 1.27 5.29 85.56 0.45 1.72 16 18 C 0.12 1.57 5.64 42.55 0.24 1.81 16 19 C -0.13 -1.27 8.17 22.35 0.18 -1.09 16 20 C -0.10 -1.05 10.16 22.51 0.23 -0.82 16 21 C 0.03 0.45 7.34 22.47 0.17 0.61 16 22 F -0.14 -2.05 17.28 44.97 0.78 -1.28 16 23 C 0.07 0.98 11.17 84.73 0.95 1.93 16 24 N -0.46 -7.66 10.27 -183.71 -1.89 -9.54 16 25 C 0.04 0.64 5.38 86.40 0.46 1.11 16 26 C 0.11 2.15 6.51 86.36 0.56 2.71 16 27 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 28 H 0.11 3.85 7.66 -2.39 -0.02 3.83 16 29 H 0.11 3.84 8.00 -2.40 -0.02 3.82 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.16 7.06 -2.39 -0.02 2.15 16 32 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 33 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 1.15 7.97 -2.39 -0.02 1.13 16 35 H 0.07 0.63 8.02 -2.38 -0.02 0.61 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 37 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 1.25 5.97 -2.39 -0.01 1.23 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.10 1.87 6.02 -2.39 -0.01 1.85 16 Total: -1.00 -77.88 365.85 0.82 -77.05 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.04 Total: 11.96 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.41 Total: -0.03 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -8.22 Total: -96.61 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.05 Total: -26.62 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.78 Total: -1.28 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -77.88 0.82 -77.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112628998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.661 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds