Wall clock time and date at job start Tue Mar 31 2020 22:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48496 * 109.46711 * 239.99269 * 3 2 1 5 5 H 1.48496 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47086 * 119.99517 * 3 2 1 7 7 C 1.38799 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99837 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99809 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46861 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99921 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99485 * 179.97438 * 11 10 9 14 14 C 1.47080 * 120.87919 * 179.97438 * 13 11 10 15 15 C 1.53238 * 108.52200 * 231.20827 * 14 13 11 16 16 N 1.46899 * 109.33655 * 306.16664 * 15 14 13 17 17 C 1.46905 * 110.99725 * 187.25497 * 16 15 14 18 18 C 1.50696 * 109.47119 * 170.00278 * 17 16 15 19 19 C 1.38232 * 120.40530 * 269.97635 * 18 17 16 20 20 N 1.31849 * 120.82074 * 180.02562 * 19 18 17 21 21 C 1.31870 * 121.75267 * 359.97438 * 20 19 18 22 22 C 1.38423 * 120.72298 * 359.73913 * 21 20 19 23 23 F 1.35106 * 120.44270 * 180.26434 * 22 21 20 24 24 C 1.38596 * 120.40584 * 89.99983 * 18 17 16 25 25 C 1.46896 * 111.26966 * 63.11054 * 16 15 14 26 26 C 1.47081 * 120.88605 * 0.02562 * 13 11 10 27 27 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46936 * 59.99998 * 10 9 7 29 29 H 1.09001 * 109.47177 * 299.99614 * 10 9 7 30 30 H 1.09002 * 109.62846 * 111.49378 * 14 13 11 31 31 H 1.09006 * 109.63030 * 350.92058 * 14 13 11 32 32 H 1.09007 * 109.49164 * 186.21060 * 15 14 13 33 33 H 1.08997 * 109.49176 * 66.13103 * 15 14 13 34 34 H 1.08999 * 109.46953 * 50.00131 * 17 16 15 35 35 H 1.09004 * 109.47001 * 290.00201 * 17 16 15 36 36 H 1.08003 * 119.58907 * 0.02562 * 19 18 17 37 37 H 1.07991 * 119.63876 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.79700 * 359.95088 * 24 18 17 39 39 H 1.09000 * 109.49579 * 56.84508 * 25 16 15 40 40 H 1.09001 * 109.49716 * 176.93571 * 25 16 15 41 41 H 1.09001 * 109.62628 * 248.50572 * 26 13 11 42 42 H 1.09000 * 109.62201 * 9.08163 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8441 -6.3431 -0.0007 14 6 2.3496 -7.7283 -0.0008 15 6 3.0438 -8.4930 1.1312 16 7 4.4994 -8.3532 0.9915 17 6 5.2053 -9.2104 1.9533 18 6 6.6756 -9.2309 1.6232 19 6 7.1853 -10.1815 0.7588 20 7 8.4703 -10.2073 0.4647 21 6 9.3171 -9.3357 0.9768 22 6 8.8793 -8.3509 1.8454 23 9 9.7510 -7.4575 2.3626 24 6 7.5333 -8.2972 2.1830 25 6 4.9159 -6.9514 1.1311 26 6 4.2985 -6.1235 -0.0002 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7313 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 2.5804 -8.1994 -0.9563 31 1 1.2718 -7.7323 0.1617 32 1 2.7729 -9.5475 1.0774 33 1 2.7296 -8.0850 2.0919 34 1 4.8064 -10.2232 1.8983 35 1 5.0646 -8.8186 2.9607 36 1 6.5227 -10.9122 0.3188 37 1 10.3627 -9.3881 0.7121 38 1 7.1628 -7.5427 2.8613 39 1 4.5757 -6.5648 2.0918 40 1 6.0027 -6.8877 1.0772 41 1 4.7169 -6.4400 -0.9557 42 1 4.5090 -5.0665 0.1627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112629231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:28 Heat of formation + Delta-G solvation = -27.949236 kcal Electronic energy + Delta-G solvation = -26205.559885 eV Core-core repulsion = 22226.730696 eV Total energy + Delta-G solvation = -3978.829189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.40294 -40.81538 -39.90301 -38.01256 -35.12882 -33.05922 -32.44954 -31.72079 -31.47852 -29.50289 -27.90789 -25.56457 -25.21453 -24.35269 -23.75403 -22.35091 -21.33975 -19.07508 -17.86754 -17.80602 -17.64517 -17.29398 -16.89188 -16.26791 -15.76211 -15.55327 -15.44286 -15.25247 -15.10159 -14.82268 -14.34325 -13.99992 -13.92298 -13.70274 -13.57455 -13.53254 -13.16821 -12.72995 -12.72189 -12.47552 -12.12369 -11.89982 -11.57329 -11.53548 -11.31188 -11.06202 -11.05553 -10.78130 -10.27882 -10.11517 -9.83693 -9.40795 -9.38971 -9.08058 -8.94833 -8.47710 -8.25991 -6.52897 -6.23518 -3.94597 0.40630 0.55637 2.84856 2.98931 3.06441 3.21957 3.23825 3.27539 3.47041 3.54647 3.64337 3.92244 4.11552 4.18325 4.20607 4.37940 4.52031 4.53984 4.69790 4.82527 4.90384 4.97492 5.07299 5.11481 5.13497 5.18564 5.28352 5.29988 5.33600 5.42458 5.50061 5.57250 5.65959 5.73687 5.82305 5.88845 6.07362 6.11341 6.45999 6.54282 6.61408 7.33153 7.51272 7.57192 8.32779 8.50968 9.21580 10.83833 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.002440 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.623541 B =11473.661846 C =13136.316660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.516 6.516 13 N -0.623 5.623 14 C 0.118 3.882 15 C 0.043 3.957 16 N -0.532 5.532 17 C 0.095 3.905 18 C -0.098 4.098 19 C 0.110 3.890 20 N -0.457 5.457 21 C 0.073 3.927 22 C 0.049 3.951 23 F -0.129 7.129 24 C -0.106 4.106 25 C 0.035 3.965 26 C 0.115 3.885 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.146 0.854 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.674 -22.041 4.339 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.391 6.391 13 N -0.360 5.360 14 C -0.005 4.005 15 C -0.085 4.085 16 N -0.257 5.257 17 C -0.032 4.032 18 C -0.101 4.101 19 C -0.047 4.047 20 N -0.164 5.164 21 C -0.086 4.086 22 C 0.028 3.972 23 F -0.108 7.108 24 C -0.133 4.133 25 C -0.094 4.094 26 C -0.009 4.009 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.182 0.818 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.161 -22.973 3.308 27.723 hybrid contribution 1.804 2.437 1.530 3.396 sum 16.965 -20.536 4.838 27.072 Atomic orbital electron populations 1.70006 1.05953 1.27594 1.46712 1.24991 0.95031 0.99021 0.94502 0.86226 0.79248 0.81233 0.78814 1.19905 1.20790 1.19943 1.22812 0.94835 0.91625 1.59150 0.91004 1.85405 1.04922 0.96330 1.96704 1.23553 1.06527 0.95421 1.04640 1.20340 0.86187 0.86178 0.74926 1.90691 1.15136 1.85203 1.48023 1.48165 1.06307 1.05850 1.75634 1.21600 0.99874 0.80876 0.98124 1.22537 0.86370 1.01138 0.98467 1.61972 1.05949 1.07368 1.50410 1.20994 0.88745 0.99196 0.94315 1.20684 0.96420 0.95534 0.97413 1.22781 0.91342 0.96989 0.93615 1.67790 1.03849 1.22992 1.21764 1.22948 1.00992 0.90619 0.94026 1.18802 0.88102 0.91564 0.98747 1.91550 1.68277 1.65826 1.85133 1.21654 0.91605 0.99639 1.00408 1.22619 1.00685 0.87739 0.98337 1.21759 0.79998 1.00452 0.98692 0.92104 0.89402 0.89229 0.90982 0.88407 0.89296 0.93917 0.88713 0.93115 0.81765 0.81606 0.83640 0.93808 0.89653 0.90707 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.03 4.52 36.01 0.16 -2.87 16 11 C 0.54 10.03 7.73 -10.98 -0.08 9.95 16 12 O -0.52 -11.62 15.31 5.56 0.09 -11.54 16 13 N -0.62 -8.62 3.01 -172.48 -0.52 -9.14 16 14 C 0.12 1.35 6.60 -3.60 -0.02 1.32 16 15 C 0.04 0.36 5.62 -3.70 -0.02 0.34 16 16 N -0.53 -4.22 4.62 -235.79 -1.09 -5.31 16 17 C 0.10 0.56 5.14 -4.98 -0.03 0.54 16 18 C -0.10 -0.64 4.89 -104.49 -0.51 -1.16 16 19 C 0.11 0.78 10.86 -17.55 -0.19 0.59 16 20 N -0.46 -3.88 10.36 -13.20 -0.14 -4.02 16 21 C 0.07 0.55 11.17 -17.47 -0.20 0.35 16 22 C 0.05 0.38 7.35 -39.28 -0.29 0.10 16 23 F -0.13 -1.12 17.28 2.25 0.04 -1.08 16 24 C -0.11 -0.74 8.02 -39.21 -0.31 -1.05 16 25 C 0.03 0.31 5.36 -3.73 -0.02 0.29 16 26 C 0.11 1.25 6.50 -3.63 -0.02 1.23 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.63 7.66 -51.92 -0.40 1.23 16 29 H 0.09 1.68 8.00 -51.92 -0.42 1.26 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.26 7.06 -51.93 -0.37 0.90 16 32 H 0.09 0.55 7.99 -51.93 -0.41 0.14 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.41 7.92 -51.93 -0.41 0.00 16 35 H 0.05 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.15 0.86 7.96 -52.49 -0.42 0.45 16 39 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.68 5.68 -51.93 -0.29 0.38 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.03 6.02 -51.93 -0.31 0.71 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -34.67 365.17 -9.49 -44.16 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.53 Total: -2.43 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.34 Total: -3.24 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -1.01 Total: -43.80 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.67 -9.49 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.212 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds