Wall clock time and date at job start Tue Mar 31 2020 22:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99932 * 2 1 4 4 H 1.48496 * 109.46711 * 239.99269 * 3 2 1 5 5 H 1.48496 * 109.47057 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47086 * 119.99517 * 3 2 1 7 7 C 1.38799 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99837 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99809 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46861 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99921 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99485 * 179.97438 * 11 10 9 14 14 C 1.47080 * 120.87919 * 179.97438 * 13 11 10 15 15 C 1.53238 * 108.52200 * 231.20827 * 14 13 11 16 16 N 1.46899 * 109.33655 * 306.16664 * 15 14 13 17 17 C 1.46905 * 110.99725 * 187.25497 * 16 15 14 18 18 C 1.50696 * 109.47119 * 170.00278 * 17 16 15 19 19 C 1.38232 * 120.40530 * 269.97635 * 18 17 16 20 20 N 1.31849 * 120.82074 * 180.02562 * 19 18 17 21 21 C 1.31870 * 121.75267 * 359.97438 * 20 19 18 22 22 C 1.38423 * 120.72298 * 359.73913 * 21 20 19 23 23 F 1.35106 * 120.44270 * 180.26434 * 22 21 20 24 24 C 1.38596 * 120.40584 * 89.99983 * 18 17 16 25 25 C 1.46896 * 111.26966 * 63.11054 * 16 15 14 26 26 C 1.47081 * 120.88605 * 0.02562 * 13 11 10 27 27 H 0.97000 * 120.00087 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46936 * 59.99998 * 10 9 7 29 29 H 1.09001 * 109.47177 * 299.99614 * 10 9 7 30 30 H 1.09002 * 109.62846 * 111.49378 * 14 13 11 31 31 H 1.09006 * 109.63030 * 350.92058 * 14 13 11 32 32 H 1.09007 * 109.49164 * 186.21060 * 15 14 13 33 33 H 1.08997 * 109.49176 * 66.13103 * 15 14 13 34 34 H 1.08999 * 109.46953 * 50.00131 * 17 16 15 35 35 H 1.09004 * 109.47001 * 290.00201 * 17 16 15 36 36 H 1.08003 * 119.58907 * 0.02562 * 19 18 17 37 37 H 1.07991 * 119.63876 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.79700 * 359.95088 * 24 18 17 39 39 H 1.09000 * 109.49579 * 56.84508 * 25 16 15 40 40 H 1.09001 * 109.49716 * 176.93571 * 25 16 15 41 41 H 1.09001 * 109.62628 * 248.50572 * 26 13 11 42 42 H 1.09000 * 109.62201 * 9.08163 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9873 -5.3028 -0.0001 12 8 0.7911 -5.5023 -0.0010 13 7 2.8441 -6.3431 -0.0007 14 6 2.3496 -7.7283 -0.0008 15 6 3.0438 -8.4930 1.1312 16 7 4.4994 -8.3532 0.9915 17 6 5.2053 -9.2104 1.9533 18 6 6.6756 -9.2309 1.6232 19 6 7.1853 -10.1815 0.7588 20 7 8.4703 -10.2073 0.4647 21 6 9.3171 -9.3357 0.9768 22 6 8.8793 -8.3509 1.8454 23 9 9.7510 -7.4575 2.3626 24 6 7.5333 -8.2972 2.1830 25 6 4.9159 -6.9514 1.1311 26 6 4.2985 -6.1235 -0.0002 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7313 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 2.5804 -8.1994 -0.9563 31 1 1.2718 -7.7323 0.1617 32 1 2.7729 -9.5475 1.0774 33 1 2.7296 -8.0850 2.0919 34 1 4.8064 -10.2232 1.8983 35 1 5.0646 -8.8186 2.9607 36 1 6.5227 -10.9122 0.3188 37 1 10.3627 -9.3881 0.7121 38 1 7.1628 -7.5427 2.8613 39 1 4.5757 -6.5648 2.0918 40 1 6.0027 -6.8877 1.0772 41 1 4.7169 -6.4400 -0.9557 42 1 4.5090 -5.0665 0.1627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112629231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:28 Heat of formation + Delta-G solvation = -51.669956 kcal Electronic energy + Delta-G solvation = -26206.588493 eV Core-core repulsion = 22226.730696 eV Total energy + Delta-G solvation = -3979.857797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.00474 -41.47327 -40.94450 -39.03235 -36.11341 -34.59613 -33.77576 -32.49116 -32.16735 -30.81550 -28.79198 -27.66620 -26.01251 -25.01537 -24.46388 -23.03042 -22.22962 -20.36333 -19.52583 -18.43174 -18.27387 -18.20667 -17.80681 -17.00876 -16.91198 -16.88272 -16.71598 -16.26089 -16.09064 -15.83895 -15.69269 -14.94698 -14.82971 -14.68355 -14.49209 -14.29338 -14.18445 -14.07854 -13.61267 -13.32610 -13.20659 -13.18387 -12.87762 -12.74671 -12.64983 -12.42153 -12.30345 -12.08430 -11.73812 -11.13993 -10.90855 -10.82614 -10.66255 -10.29010 -9.93213 -9.87190 -9.33665 -8.69006 -8.35561 -6.14273 -0.11791 0.02506 1.23725 1.43143 1.44443 1.53942 1.54350 2.05208 2.26373 2.48767 2.92300 2.98483 3.03406 3.22751 3.43074 3.61593 3.62241 3.71795 3.85451 3.90264 3.96308 4.06037 4.15790 4.24169 4.24893 4.32343 4.42201 4.47054 4.54845 4.67947 4.73377 4.79110 4.81854 4.83576 4.84641 5.02487 5.08256 5.40209 5.47600 5.60366 5.88837 5.90638 6.18322 6.26416 6.80923 7.05465 7.10410 8.73423 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.002440 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.623541 B =11473.661846 C =13136.316660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.610 5.610 14 C 0.113 3.887 15 C 0.053 3.947 16 N -0.533 5.533 17 C 0.099 3.901 18 C -0.096 4.096 19 C 0.109 3.891 20 N -0.479 5.479 21 C 0.068 3.932 22 C 0.035 3.965 23 F -0.138 7.138 24 C -0.107 4.107 25 C 0.041 3.959 26 C 0.108 3.892 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.032 0.968 34 H 0.118 0.882 35 H 0.056 0.944 36 H 0.184 0.816 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.038 0.962 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.016 -23.065 4.593 30.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.275 4.275 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.344 5.344 14 C -0.009 4.009 15 C -0.075 4.075 16 N -0.258 5.258 17 C -0.029 4.029 18 C -0.098 4.098 19 C -0.048 4.048 20 N -0.187 5.187 21 C -0.090 4.090 22 C 0.014 3.986 23 F -0.117 7.117 24 C -0.134 4.134 25 C -0.088 4.088 26 C -0.015 4.015 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.051 0.949 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.201 0.799 37 H 0.197 0.803 38 H 0.173 0.827 39 H 0.056 0.944 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.563 -24.045 3.567 29.989 hybrid contribution 1.151 2.584 1.434 3.172 sum 18.714 -21.461 5.001 28.910 Atomic orbital electron populations 1.70176 1.07969 1.28700 1.47887 1.26129 0.95968 1.03307 0.93702 0.85011 0.77822 0.75694 0.79524 1.18654 1.20388 1.18609 1.23152 0.95300 0.91926 1.59041 0.89941 1.85577 1.10502 0.99226 1.97024 1.23366 1.03443 0.94546 1.06182 1.20099 0.85982 0.86601 0.75177 1.90674 1.17112 1.85744 1.50794 1.48170 1.07151 1.05817 1.73277 1.21814 0.99262 0.79586 1.00264 1.22457 0.86450 1.02236 0.96367 1.61958 1.05604 1.06897 1.51329 1.21059 0.87962 0.99940 0.93901 1.20720 0.96679 0.95236 0.97194 1.23146 0.91170 0.97244 0.93268 1.67830 1.04659 1.23606 1.22601 1.23195 1.01723 0.90322 0.93746 1.18929 0.88439 0.91846 0.99389 1.91526 1.68638 1.66164 1.85348 1.21833 0.91376 0.99860 1.00305 1.22532 1.01143 0.88139 0.96951 1.22018 0.77954 1.01130 1.00383 0.91964 0.87610 0.87627 0.89550 0.90382 0.86204 0.94932 0.86397 0.92580 0.79911 0.80261 0.82741 0.94362 0.88370 0.89437 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.40 29.55 68.60 2.03 45.42 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.13 9.50 67.95 0.65 -30.49 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.12 -4.98 4.52 71.24 0.32 -4.66 16 11 C 0.53 20.07 7.73 87.66 0.68 20.74 16 12 O -0.56 -26.27 15.31 -3.02 -0.05 -26.32 16 13 N -0.61 -16.13 3.01 -818.01 -2.46 -18.59 16 14 C 0.11 2.39 6.60 86.35 0.57 2.96 16 15 C 0.05 0.75 5.62 86.38 0.49 1.23 16 16 N -0.53 -6.66 4.62 -899.91 -4.16 -10.81 16 17 C 0.10 0.80 5.14 85.55 0.44 1.24 16 18 C -0.10 -0.98 4.89 -19.78 -0.10 -1.07 16 19 C 0.11 1.24 10.86 84.69 0.92 2.16 16 20 N -0.48 -7.24 10.36 -195.67 -2.03 -9.27 16 21 C 0.07 0.93 11.17 84.73 0.95 1.88 16 22 C 0.04 0.50 7.35 22.47 0.17 0.66 16 23 F -0.14 -2.26 17.28 44.97 0.78 -1.48 16 24 C -0.11 -1.25 8.02 22.51 0.18 -1.07 16 25 C 0.04 0.61 5.36 86.37 0.46 1.08 16 26 C 0.11 2.10 6.50 86.33 0.56 2.66 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.11 3.83 7.66 -2.40 -0.02 3.81 16 29 H 0.11 3.86 8.00 -2.39 -0.02 3.85 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.01 7.06 -2.38 -0.02 1.99 16 32 H 0.12 1.00 7.99 -2.38 -0.02 0.99 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.12 0.47 7.92 -2.39 -0.02 0.45 16 35 H 0.06 0.45 8.08 -2.39 -0.02 0.43 16 36 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.18 1.73 8.06 -2.92 -0.02 1.70 16 38 H 0.15 1.47 7.96 -2.91 -0.02 1.45 16 39 H 0.04 0.63 8.14 -2.39 -0.02 0.62 16 40 H 0.10 1.27 5.68 -2.39 -0.01 1.25 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.83 6.02 -2.39 -0.01 1.81 16 Total: -1.00 -77.73 365.17 1.02 -76.71 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.04 Total: 10.98 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.75 Total: -1.43 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -8.36 Total: -94.34 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.05 Total: -26.32 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -77.73 1.02 -76.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.036 kcal (2) G-P(sol) polarization free energy of solvation -77.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds