Wall clock time and date at job start Tue Mar 31 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86798 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47123 * 269.99655 * 3 2 1 5 5 H 1.48501 * 109.47018 * 29.99561 * 3 2 1 6 6 H 1.48501 * 109.47300 * 149.99490 * 3 2 1 7 7 C 1.38798 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99990 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99764 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99682 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99403 * 359.97438 * 11 10 9 13 13 N 1.34765 * 120.00312 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.53779 * 113.61157 * 204.99983 * 14 13 11 16 16 C 1.53790 * 87.07747 * 219.93304 * 15 14 13 17 17 C 1.53001 * 113.61238 * 139.98745 * 16 15 14 18 18 N 1.46491 * 109.47147 * 175.00127 * 17 16 15 19 19 C 1.38995 * 120.00432 * 179.97438 * 18 17 16 20 20 C 1.39069 * 119.68524 * 359.97438 * 19 18 17 21 21 C 1.38380 * 119.15738 * 179.97438 * 20 19 18 22 22 C 1.38757 * 118.53396 * 0.25426 * 21 20 19 23 23 C 1.38375 * 119.30154 * 359.47728 * 22 21 20 24 24 F 1.35104 * 119.59988 * 180.25841 * 23 22 21 25 25 N 1.32134 * 120.79616 * 0.53193 * 23 22 21 26 26 C 1.53777 * 87.07956 * 25.43559 * 16 15 14 27 27 H 0.97004 * 119.99466 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47560 * 60.00497 * 10 9 7 29 29 H 1.09002 * 109.47569 * 299.99909 * 10 9 7 30 30 H 0.97005 * 120.00209 * 0.02562 * 13 11 10 31 31 H 1.08999 * 112.84330 * 336.19551 * 14 13 11 32 32 H 1.09005 * 113.61274 * 105.38751 * 15 14 13 33 33 H 1.08998 * 113.61850 * 334.48046 * 15 14 13 34 34 H 1.09004 * 113.61340 * 270.80025 * 16 15 14 35 35 H 1.08999 * 109.47326 * 54.99384 * 17 16 15 36 36 H 1.09006 * 109.46790 * 294.99452 * 17 16 15 37 37 H 0.97003 * 120.00140 * 359.97438 * 18 17 16 38 38 H 1.08000 * 120.42646 * 0.02562 * 20 19 18 39 39 H 1.08002 * 120.73050 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.34994 * 179.75200 * 22 21 20 41 41 H 1.08997 * 113.61761 * 89.11561 * 26 16 15 42 42 H 1.09003 * 113.61087 * 220.01565 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3028 0.0017 12 8 0.7910 -5.5022 0.0009 13 7 2.8440 -6.3431 0.0022 14 6 2.3302 -7.7151 0.0012 15 6 3.3096 -8.7400 0.5974 16 6 2.8722 -9.6941 -0.5266 17 6 4.0236 -10.5043 -1.1255 18 7 3.4924 -11.4629 -2.0976 19 6 4.3556 -12.3149 -2.7766 20 6 5.7225 -12.2514 -2.5284 21 6 6.5718 -13.1051 -3.2101 22 6 6.0246 -13.9936 -4.1247 23 6 4.6546 -14.0076 -4.3189 24 9 4.1148 -14.8738 -5.2041 25 7 3.8685 -13.1802 -3.6530 26 6 2.5107 -8.4415 -1.3421 27 1 -0.4849 0.8401 -0.0004 28 1 3.1237 -3.7310 0.8926 29 1 3.1252 -3.7318 -0.8874 30 1 3.8008 -6.1835 0.0032 31 1 1.3208 -7.7893 0.4057 32 1 3.0305 -9.0822 1.5939 33 1 4.3542 -8.4360 0.5302 34 1 2.0117 -10.3105 -0.2660 35 1 4.5416 -11.0416 -0.3311 36 1 4.7212 -9.8308 -1.6235 37 1 2.5382 -11.5031 -2.2675 38 1 6.1161 -11.5454 -1.8122 39 1 7.6376 -13.0773 -3.0375 40 1 6.6607 -14.6702 -4.6759 41 1 3.3368 -8.0559 -1.9395 42 1 1.5866 -8.5428 -1.9113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112832828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:09 Heat of formation + Delta-G solvation = -20.921653 kcal Electronic energy + Delta-G solvation = -24703.594929 eV Core-core repulsion = 20725.070478 eV Total energy + Delta-G solvation = -3978.524451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.34601 -40.68745 -40.07251 -38.37289 -35.98526 -33.40288 -32.93821 -32.44879 -30.36536 -29.21268 -27.40260 -26.04511 -25.51249 -24.14331 -23.39501 -22.25126 -20.47517 -20.03466 -18.48996 -18.06039 -17.82599 -16.64803 -16.46403 -16.43324 -16.24115 -16.02216 -15.63742 -15.23864 -15.03378 -14.82433 -14.60783 -14.10832 -13.89763 -13.60548 -13.52902 -13.28403 -12.85508 -12.79779 -12.71223 -12.57354 -12.33170 -11.87176 -11.55830 -11.08427 -11.05963 -11.00502 -10.93271 -10.77626 -10.62107 -10.14302 -10.05273 -9.83458 -9.42499 -9.09150 -8.91619 -8.26348 -8.24801 -6.52549 -6.23825 -3.94640 0.64757 0.87226 2.40134 3.00946 3.01790 3.20654 3.26378 3.28285 3.30285 3.50274 3.67903 4.09342 4.14629 4.18275 4.18739 4.34377 4.45740 4.57285 4.67573 4.73863 4.82258 4.96275 5.09109 5.11452 5.12017 5.27765 5.34925 5.37256 5.42318 5.45610 5.65113 5.70195 5.72263 5.74677 5.85467 6.03135 6.08036 6.10778 6.45058 6.60870 6.97653 7.50024 7.57307 7.66229 8.32932 8.56622 9.21529 10.83587 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025809 B = 0.001499 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.631339 B =18676.557192 C =18893.779451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.729 5.729 14 C 0.127 3.873 15 C -0.135 4.135 16 C -0.123 4.123 17 C 0.139 3.861 18 N -0.717 5.717 19 C 0.440 3.560 20 C -0.251 4.251 21 C -0.006 4.006 22 C -0.259 4.259 23 C 0.357 3.643 24 F -0.114 7.114 25 N -0.579 5.579 26 C -0.148 4.148 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.409 0.591 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.087 0.913 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.643 -27.561 -2.873 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.382 5.382 14 C 0.021 3.979 15 C -0.173 4.173 16 C -0.142 4.142 17 C 0.015 3.985 18 N -0.348 5.348 19 C 0.203 3.797 20 C -0.276 4.276 21 C -0.032 4.032 22 C -0.283 4.283 23 C 0.202 3.798 24 F -0.093 7.093 25 N -0.303 5.303 26 C -0.187 4.187 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.245 0.755 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.105 0.895 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.646 -27.674 -2.892 30.564 hybrid contribution 2.742 1.154 -0.201 2.981 sum 15.388 -26.520 -3.093 30.817 Atomic orbital electron populations 1.70021 1.05956 1.27474 1.46800 1.24994 0.95030 0.99039 0.94510 0.86166 0.79399 0.81557 0.78356 1.20268 1.20730 1.19704 1.22867 0.94903 0.91658 1.59032 0.90925 1.85408 1.04911 0.96352 1.96721 1.23545 1.06605 0.95455 1.04906 1.20365 0.86606 0.86395 0.74735 1.90701 1.15413 1.85594 1.47412 1.45975 1.09723 1.05103 1.77365 1.22346 0.99281 0.80181 0.96071 1.23335 1.00255 0.95364 0.98382 1.22601 0.98479 0.95340 0.97781 1.21490 0.96269 0.90186 0.90560 1.44642 1.09148 1.37615 1.43402 1.17831 0.87961 0.86744 0.87157 1.21446 0.92129 1.06320 1.07739 1.21202 1.00317 0.90728 0.90918 1.21486 0.93586 1.06737 1.06532 1.17665 0.87758 0.87028 0.87313 1.91631 1.87473 1.65636 1.64533 1.66223 1.41346 1.09875 1.12886 1.23600 1.02795 0.94736 0.97566 0.92165 0.89204 0.89243 0.76750 0.86637 0.90231 0.89205 0.87981 0.91340 0.91261 0.75526 0.84265 0.83831 0.83911 0.89452 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.47 7.85 -10.99 -0.09 9.38 16 12 O -0.52 -11.38 15.46 5.55 0.09 -11.30 16 13 N -0.73 -8.70 5.36 -53.01 -0.28 -8.99 16 14 C 0.13 1.25 4.24 -67.12 -0.28 0.97 16 15 C -0.13 -0.80 7.39 -25.92 -0.19 -1.00 16 16 C -0.12 -0.68 3.75 -89.80 -0.34 -1.02 16 17 C 0.14 0.68 4.73 -4.05 -0.02 0.66 16 18 N -0.72 -4.94 5.73 -60.43 -0.35 -5.29 16 19 C 0.44 3.77 7.65 -155.02 -1.19 2.58 16 20 C -0.25 -1.61 9.32 -39.22 -0.37 -1.97 16 21 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 22 C -0.26 -1.77 10.08 -39.34 -0.40 -2.16 16 23 C 0.36 3.44 8.41 -17.37 -0.15 3.30 16 24 F -0.11 -1.15 17.29 2.25 0.04 -1.11 16 25 N -0.58 -6.19 10.40 -12.78 -0.13 -6.32 16 26 C -0.15 -1.21 7.43 -25.92 -0.19 -1.40 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.40 3.54 8.73 -40.82 -0.36 3.19 16 31 H 0.12 1.40 7.46 -51.93 -0.39 1.01 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.27 7.93 -51.93 -0.41 -0.14 16 36 H 0.07 0.32 7.63 -51.93 -0.40 -0.08 16 37 H 0.41 2.87 8.60 -40.82 -0.35 2.52 16 38 H 0.14 0.60 6.70 -52.49 -0.35 0.24 16 39 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -35.65 377.02 -10.23 -45.88 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.59 Total: 1.10 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -3.18 Total: -6.74 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.03 Total: -45.85 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.65 -10.23 -45.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112832828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.954 kcal (2) G-P(sol) polarization free energy of solvation -35.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds